Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003778

Physical Location & Seq

Genomic Coordinates Reverse (-)

10752161 .. 10753102

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0069700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTAGAATCATTGATTTTAAGTGATAACAATTTTGGAGGGACGTTGCCCACATCGATATCCAGTCTCACAACCAAGCTTGAAGAGCTTCAGATTGAAGGGAACCAACTACATGGAAGCATCCCAGCTGAGATAGGAAATCTGGTCAACTTGAAAACACTCACTTTGGGGAGAAACAACTTAACAGGTAATATTCCCACACACTTCGGGAAGCTTTCAAAGCTTGTTCTATTGACTCTCCATGAAAATGAGTTATCAGGGAGTGTTCCATCCTCTAGGAAATTTGAGCATGCTAATCGAACTCATGGCAGCATTCCTTCAAGCCTAGGTGCATGCCACAAGATGCTGCAATTAAATCTTTCTCAAAATAGCTTTAATGGCTCAATACCTCTGAAAGTATTTAATGGCCTCCCTTCCTTGTCAATTTCATTGGATTTGTCCAGAAACTTCTTTTCTGGTTCCCTTCCCGAGGAGGTTGGAAAGTTGAAGAATCTTGCTATATTGGATGCTTCTGATAACATGTTAACGGAACAGCTTCCTAAAAGCCTTGGTAGCTGTGAGAGTTTAGAAGTCTTACATTTCCAAGGCAACTTCTTTGAGGGGCCAATTCCTCCGTCTATGACTTCATTGAGAGGGATTCAAGATTTAGACCTTTCTCGCAACAATCTGTCAGGAGCTGTACCAATTGATGGTGTCTCTAAAAATGTAAGTGCGACCTCAATTATTGGAAACACCGGGCTGTGTGGCGGTATTGCTAAGCTCTCGTTGCCCAAATGCGTGGCGGTATTGCTAAGCTCTCGTTGCCCAAATGCAACTCTAAAGAGTCCAAAAGATTGTCTCGTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

282

Amino Acids

29.88

Weight (kDa)

7.04

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	118 - 219	6.5e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42390 AT5G42390
fragaria_vesca	FvH4_1g30291 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800
malus_domestica	MD00G1159400.v1.1 MD00G1204700.v1.1
prunus_persica	Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1
pyrus_communis	pycom290g00010
rosa_chinensis	RchiOBHm_Chr3g0491051
rosa_laevigata	RLG00000022866
rosa_multiflora	Rmu_co8044182.1_g000001 Rmu_ssc0000386.1_g000043
rosa_roxburghii	Rroxscaffold_5G00351210 Rroxscaffold_6G00393270
rosa_rugosa	Rorug03G0245500 Rorug04G0069600 Rorug04G0069700 Rorug04G0070700 Rorug04G0070800
rosa_samantha	Rh3AG295700 Rh3BG331900 Rh3CG329000 Rh3DG329500
rosa_wichuraiana	Rw3G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AciI	CCGC	2 cut(s)	747, 782
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	681
AfiI	CCNNNNNNNGG	2 cut(s)	469, 689
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	7 cut(s)	83, 98, 154, 219, 321, 487, 641
Alw26I	GTCTC	3 cut(s)	71, 700, 842
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	406, 602
ApeKI	GCWGC	2 cut(s)	309, 346
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	2 cut(s)	87, 534
AspA2I	CCTAGG	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	467
AvrII	CCTAGG	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	321, 333
BccI	CCATC	2 cut(s)	277, 683
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	71, 700, 842
BfaI	CTAG	2 cut(s)	276, 326
BisI	GCNGC	2 cut(s)	310, 347
BlnI	CCTAGG	1 cut(s)	325
BlpI	GCTNAGC	2 cut(s)	756, 791
BlsI	GCNGC	2 cut(s)	311, 348
Bme1390I	CCNGG	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	104, 460, 603
BmrFI	CCNGG	1 cut(s)	736
BmsI	GCATC	3 cut(s)	129, 333, 496
Bpu1102I	GCTNAGC	2 cut(s)	756, 791
BpuMI	CCSGG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	325, 468, 547, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 689
Bse1I	ACTGG	1 cut(s)	63
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	4 cut(s)	325, 468, 547, 583
BseGI	GGATG	3 cut(s)	120, 269, 511
BseLI	CCNNNNNNNGG	2 cut(s)	469, 689
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	321, 333
BseYI	CCCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	408, 604
BshVI	ATCGAT	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	735
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	469, 689
BsmAI	GTCTC	3 cut(s)	71, 700, 842
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	408, 604
BsoBI	CYCGRG	1 cut(s)	467
Bsp1720I	GCTNAGC	2 cut(s)	756, 791
BspACI	CCGC	2 cut(s)	747, 782
BspANI	GGCC	2 cut(s)	408, 604
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	56
BspLI	GGNNCC	3 cut(s)	104, 460, 603
BspQI	GCTCTTC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	4 cut(s)	325, 468, 547, 583
BssT1I	CCWWGG	3 cut(s)	325, 547, 583
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	291, 334
BstDEI	CTNAG	3 cut(s)	129, 756, 791
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	120, 269, 511
BstMAI	GTCTC	3 cut(s)	71, 700, 842
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 220, 378, 552, 766, 801
BstNSI	RCATGY	3 cut(s)	293, 336, 523
BstSCI	CCNGG	1 cut(s)	734
BstV1I	GCAGC	2 cut(s)	321, 333
BstXI	CCANNNNNNTGG	2 cut(s)	113, 778
Bsu15I	ATCGAT	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	408, 604
BsuTUI	ATCGAT	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	120, 269, 511
Cac8I	GCNNGC	2 cut(s)	291, 334
CaiI	CAGNNNCTG	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	680
CviAII	CATG	7 cut(s)	113, 242, 290, 305, 333, 520, 846
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	3 cut(s)	129, 756, 791
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	3 cut(s)	325, 547, 583
Eco32I	GATATC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	3 cut(s)	325, 547, 583
ErhI	CCWWGG	3 cut(s)	325, 547, 583
FaeI	CATG	7 cut(s)	116, 245, 293, 308, 336, 523, 849
FaiI	YATR	9 cut(s)	114, 243, 291, 306, 334, 500, 521, 620, 847
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	7 cut(s)	112, 241, 289, 304, 332, 519, 845
Fnu4HI	GCNGC	2 cut(s)	310, 347
FokI	GGATG	3 cut(s)	107, 256, 518
Fsp4HI	GCNGC	2 cut(s)	310, 347
FspBI	CTAG	2 cut(s)	276, 326
GluI	GCNGC	2 cut(s)	310, 347
GsaI	CCCAGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	408, 604
HapII	CCGG	1 cut(s)	735
Hin1II	CATG	7 cut(s)	116, 245, 293, 308, 336, 523, 849
HincII	GTYRAC	2 cut(s)	148, 525
HindII	GTYRAC	2 cut(s)	148, 525
HindIII	AAGCTT	3 cut(s)	77, 212, 221
HinfI	GANTC	5 cut(s)	8, 235, 490, 637, 823
HpaI	GTTAAC	1 cut(s)	525
HpaII	CCGG	1 cut(s)	735
Hpy166II	GTNNAC	2 cut(s)	148, 525
Hpy188I	TCNGA	3 cut(s)	93, 393, 514
Hpy188III	TCNNGA	5 cut(s)	208, 441, 467, 641, 672
Hpy8I	GTNNAC	2 cut(s)	148, 525
HpyAV	CCTTC	4 cut(s)	92, 327, 423, 473
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	332, 349, 812
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 220, 378, 552, 766, 801
HpyF3I	CTNAG	3 cut(s)	129, 756, 791
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	7 cut(s)	116, 245, 293, 308, 336, 523, 849
KspAI	GTTAAC	1 cut(s)	525
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	674
LpnPI	CCDG	9 cut(s)	76, 128, 138, 171, 243, 441, 454, 657, 748
Lsp1109I	GCAGC	2 cut(s)	321, 333
LweI	GCATC	3 cut(s)	129, 333, 496
MaeI	CTAG	2 cut(s)	276, 326
MaeII	ACGT	1 cut(s)	44
MboII	GAAGA	2 cut(s)	95, 499
MfeI	CAATTG	1 cut(s)	684
MluCI	AATT	7 cut(s)	31, 281, 350, 423, 606, 684, 720
MlyI	GAGTC	2 cut(s)	229, 832
MmeI	TCCRAC	1 cut(s)	457
MroXI	GAANNNNTTC	2 cut(s)	87, 534
MseI	TTAA	6 cut(s)	20, 182, 353, 375, 402, 524
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	1 cut(s)	736
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	312
MwoI	GCNNNNNNNGC	6 cut(s)	85, 220, 378, 552, 766, 801
NciI	CCSGG	1 cut(s)	736
NlaIII	CATG	7 cut(s)	116, 245, 293, 308, 336, 523, 849
NlaIV	GGNNCC	3 cut(s)	104, 460, 603
NspI	RCATGY	3 cut(s)	293, 336, 523
PaeI	GCATGC	2 cut(s)	293, 336
PciI	ACATGT	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	312
PdmI	GAANNNNTTC	2 cut(s)	87, 534
PfeI	GAWTC	3 cut(s)	8, 490, 637
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	311, 348
PleI	GAGTC	2 cut(s)	229, 831
PpsI	GAGTC	2 cut(s)	229, 831
PscI	ACATGT	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	104, 460, 603
PspPI	GGNCC	1 cut(s)	602
PstNI	CAGNNNCTG	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	6 cut(s)	20, 182, 353, 375, 402, 524
SatI	GCNGC	2 cut(s)	310, 347
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	229, 832
ScrFI	CCNGG	1 cut(s)	736
SfaNI	GCATC	3 cut(s)	129, 333, 496
SmiMI	CAYNNNNRTG	1 cut(s)	246
SphI	GCATGC	2 cut(s)	293, 336
Sse9I	AATT	7 cut(s)	31, 281, 350, 423, 606, 684, 720
SsiI	CCGC	2 cut(s)	747, 782
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	2 cut(s)	276, 326
StyD4I	CCNGG	1 cut(s)	734
StyI	CCWWGG	3 cut(s)	325, 547, 583
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	56, 298
TasI	AATT	7 cut(s)	31, 281, 350, 423, 606, 684, 720
TfiI	GAWTC	3 cut(s)	8, 490, 637
Tru1I	TTAA	6 cut(s)	20, 182, 353, 375, 402, 524
Tru9I	TTAA	6 cut(s)	20, 182, 353, 375, 402, 524
TseI	GCWGC	2 cut(s)	309, 346
TspDTI	ATGAA	3 cut(s)	258, 417, 615
TspGWI	ACGGA	2 cut(s)	542, 603
Van91I	CCANNNNNTGG	1 cut(s)	689
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	3 cut(s)	293, 336, 523
XmaJI	CCTAGG	1 cut(s)	325
XmnI	GAANNNNTTC	2 cut(s)	87, 534
XspI	CTAG	2 cut(s)	276, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.