Prupe.8G096800_v2.0.a1

phenylalanine--tRNA ligase alpha

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
12889084 .. 12897241
8158 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G096800.2

Sequence Viewer

Length: 1464 bp
ATGGCAGAGGACGCGATTCTAGGATACCTGGAGAAAAACGATCATATTTCAGACTCGGGCCAGTTCGCAGCTGAACGCAGAATCGATCACAACGAGATTGTCAACGTTATCAAGAGTCTCCATGGTTTCAAATATGTTGACGCACAGGACATTAAAAGGGAGACGTGGGTGCTTACTGATGAAGGAAAGGCATATACTGCTACTGGATCACCTGAAGTGCAACTGTTCCTGGCCATACCACCAGAGGGTATTCCAAAAGAAGAATTGCAGAAAAAGCTGGATCTATCAGTTTTCAAAATAGGTTGTGCCCAGGCTGCAAAGAATAAATGGGTGGAGATGGGAAAACAACTTGTCACCAGAAAGATCCAACATGTGGATGACAAAGTCAAAGATTTGCTTTTACAGATACAAGAAGGGCAGGCCATCAACCAAGATGACATTAAGGCTCTCAAAGCAAGAAAGCTTATTGTTCCACAAACTTGGAAGGGCTACTCAGTGAAAAAGGGCCCCAATTATGCTCCAAAAAGAAAGAAGGTTGCTACGGATTTGACTCGAGAGAATCTGCAGAGGGGTGATTGGAAGGAAATAGAGTTCAAAGAGTATAACTTCACCGCTAAAGGTCTGCCTACTGAAGGTGGTCATCTACATCCACTGCTGAAGGTACGACAGCAATTGAAGGATATTTTCAGACAGATGGGGTTTGAGGAGATGCCTACAAACAATTATGTTGAAAGCAGCTTTTGGAACTTTGATGCACTTTTCCAGCCGCAACAACACCCTGCCCGTGATTCTCATGATACATTTTTTCTACAAGCTCCTTCAACCACCAAGGAACTGCCTGAAGATTATGTTCAGCGGGTGAAGCAGATTCATGAGTCTGGTGGTTATCAATCCCGAGGATATGGATATGATTGGAAAAGAGAGGAAGCAGACAAAAATCTTTTGCGAACTCACACAACTGCTGTTTCCTCCAGGATGCTGTACTTACTAGCACAGAAACCATTTGCCCCGAAAAAGTACTACTCTATAGATCGTGTATTCAGAAATGAAGCGGTAGATCGAACTCATCTTGCAGAGTTCCACCAGATAGAAGGTTTGGTATGTGATCGAGGGCTTACTCTTGGTGACTTGTTAGGAGTACTCCACGAATTCTTCGCACGTCTGGGCATGTCGAAGTTGCGATTCAAGCCCGCTTATAATCCCTATACTGAGCCTAGCATGGAGATTTTCAGTTATCATGAAGGCTTTGGGAAATGGGTAGAGGTTGGAAATTCTGGCATGTTTAGACCTGAAATGTTGCTTCCTATGGGACTCCCTGAAGATGTTCGTGTTATTGCATGGGGCCTCTCCCTCGAAAGACCCACCATGATACTCTACGGGATTGACAACATTCGAGATCTTTTTGGACATAAGGTCGATCTTGGTCTCATCAAGAGAAACCCAATATGCCGCCTTGGATTATAG

Protein Analysis

488

Amino Acids

56.04

Weight (kDa)

8.41

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1197
AccB7I CCANNNNNTGG 1 cut(s) 373
AccII CGCG 1 cut(s) 14
AciI CCGC 6 cut(s) 612, 767, 856, 1052, 1191, 1450
AclI AACGTT 1 cut(s) 105
AclWI GGATC 3 cut(s) 214, 288, 358
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 1148, 1270
AcuI CTGAAG 5 cut(s) 234, 651, 677, 861, 1338
AfaI GTAC 4 cut(s) 663, 983, 1019, 1140
AfiI CCNNNNNNNGG 3 cut(s) 245, 373, 632
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 7 cut(s) 130, 295, 595, 676, 731, 822, 1186
AhdI GACNNNNNGTC 1 cut(s) 1412
AjiI CACGTC 2 cut(s) 165, 1160
AjnI CCWGG 4 cut(s) 27, 228, 309, 971
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 5 cut(s) 71, 277, 463, 738, 815
AluI AGCT 5 cut(s) 71, 277, 463, 738, 815
Alw26I GTCTC 3 cut(s) 122, 155, 1430
AlwI GGATC 3 cut(s) 214, 288, 358
Ama87I CYCGRG 3 cut(s) 55, 552, 894
AoxI GGCC 5 cut(s) 58, 231, 420, 505, 1342
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 68, 314, 735
ApoI RAATTY 2 cut(s) 1148, 1270
Asp700I GAANNNNTTC 1 cut(s) 1323
AspS9I GGNCC 4 cut(s) 58, 505, 506, 1342
AsuHPI GGTGA 6 cut(s) 201, 346, 584, 601, 871, 1136
AvaI CYCGRG 3 cut(s) 55, 552, 894
BaeGI GKGCMC 2 cut(s) 310, 509
BalI TGGCCA 1 cut(s) 233
BanII GRGCYC 1 cut(s) 509
BbvI GCAGC 3 cut(s) 80, 301, 747
BccI CCATC 3 cut(s) 331, 431, 688
BciT130I CCWGG 4 cut(s) 29, 230, 311, 973
BciVI GTATCC 1 cut(s) 17
BcoDI GTCTC 3 cut(s) 122, 155, 1430
BfaI CTAG 3 cut(s) 20, 989, 1215
BfmI CTRYAG 2 cut(s) 563, 1026
BfuI GTATCC 1 cut(s) 17
BglII AGATCT 1 cut(s) 1396
BisI GCNGC 5 cut(s) 69, 315, 736, 767, 1450
BlsI GCNGC 5 cut(s) 70, 316, 737, 768, 1451
BmcAI AGTACT 2 cut(s) 1019, 1140
Bme1390I CCNGG 4 cut(s) 29, 230, 311, 973
BmeRI GACNNNNNGTC 1 cut(s) 1412
BmeT110I CYCGRG 3 cut(s) 55, 552, 894
BmgBI CACGTC 2 cut(s) 165, 1160
BmgT120I GGNCC 4 cut(s) 58, 505, 506, 1342
BmiI GGNNCC 3 cut(s) 507, 508, 1343
BmrFI CCNGG 4 cut(s) 29, 230, 311, 973
BmsI GCATC 3 cut(s) 699, 742, 966
BpmI CTGGAG 2 cut(s) 50, 955
Bsa29I ATCGAT 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 1430
BsaJI CCNNGG 5 cut(s) 121, 309, 828, 895, 1453
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 373, 632
Bse1I ACTGG 2 cut(s) 61, 208
BseBI CCWGG 4 cut(s) 29, 230, 311, 973
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 5 cut(s) 121, 309, 828, 895, 1453
BseGI GGATG 3 cut(s) 382, 646, 981
BseLI CCNNNNNNNGG 3 cut(s) 245, 373, 632
BseMII CTCAG 2 cut(s) 507, 1200
BseNI ACTGG 2 cut(s) 61, 208
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 2 cut(s) 310, 509
BseXI GCAGC 3 cut(s) 80, 301, 747
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 5 cut(s) 60, 233, 422, 507, 1344
BshVI ATCGAT 1 cut(s) 84
BsiHKCI CYCGRG 3 cut(s) 55, 552, 894
BslFI GGGAC 1 cut(s) 1323
BslI CCNNNNNNNGG 3 cut(s) 245, 373, 632
BsmAI GTCTC 3 cut(s) 122, 155, 1430
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 1323
BsnI GGCC 5 cut(s) 60, 233, 422, 507, 1344
Bso31I GGTCTC 1 cut(s) 1430
BsoBI CYCGRG 3 cut(s) 55, 552, 894
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 310, 509
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 6 cut(s) 612, 767, 856, 1052, 1191, 1450
BspANI GGCC 5 cut(s) 60, 233, 422, 507, 1344
BspCNI CTCAG 2 cut(s) 506, 1201
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 3 cut(s) 793, 871, 1237
BspLI GGNNCC 3 cut(s) 507, 508, 1343
BspMAI CTGCAG 1 cut(s) 567
BspPI GGATC 3 cut(s) 214, 288, 358
BspTNI GGTCTC 1 cut(s) 1430
BsrI ACTGG 2 cut(s) 61, 208
BssECI CCNNGG 5 cut(s) 121, 309, 828, 895, 1453
BssT1I CCWWGG 3 cut(s) 121, 828, 1453
Bst2UI CCWGG 4 cut(s) 29, 230, 311, 973
Bst4CI ACNGT 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 420, 1191
BstDEI CTNAG 2 cut(s) 493, 1209
BstDSI CCRYGG 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 3 cut(s) 382, 646, 981
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 3 cut(s) 122, 155, 1430
BstMWI GCNNNNNNNGC 7 cut(s) 11, 197, 274, 314, 452, 862, 1186
BstNI CCWGG 4 cut(s) 29, 230, 311, 973
BstNSI RCATGY 3 cut(s) 374, 1171, 1282
BstSCI CCNGG 4 cut(s) 27, 228, 309, 971
BstSFI CTRYAG 2 cut(s) 563, 1026
BstSLI GKGCMC 2 cut(s) 310, 509
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 80, 301, 747
BstX2I RGATCY 3 cut(s) 280, 363, 1396
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 3 cut(s) 280, 363, 1396
Bsu15I ATCGAT 1 cut(s) 84
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 5 cut(s) 60, 233, 422, 507, 1344
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 121
BtrI CACGTC 2 cut(s) 165, 1160
BtsCI GGATG 3 cut(s) 382, 646, 981
BtsI GCAGTG 1 cut(s) 650
BtsIMutI CAGTG 2 cut(s) 501, 650
Cac8I GCNNGC 2 cut(s) 420, 1191
CciI TCATGA 3 cut(s) 793, 871, 1237
Cfr13I GGNCC 4 cut(s) 58, 505, 506, 1342
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 2 cut(s) 20, 149
Csp6I GTAC 4 cut(s) 662, 982, 1018, 1139
CviQI GTAC 4 cut(s) 662, 982, 1018, 1139
DdeI CTNAG 2 cut(s) 493, 1209
DriI GACNNNNNGTC 1 cut(s) 1412
EaeI YGGCCR 1 cut(s) 231
Eam1105I GACNNNNNGTC 1 cut(s) 1412
Eco130I CCWWGG 3 cut(s) 121, 828, 1453
Eco24I GRGCYC 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 1430
Eco57I CTGAAG 5 cut(s) 234, 651, 677, 861, 1338
Eco88I CYCGRG 3 cut(s) 55, 552, 894
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO109I RGGNCCY 3 cut(s) 505, 506, 1342
EcoRI GAATTC 1 cut(s) 1148
EcoRII CCWGG 4 cut(s) 27, 228, 309, 971
EcoT14I CCWWGG 3 cut(s) 121, 828, 1453
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 3 cut(s) 121, 828, 1453
Esp3I CGTCTC 1 cut(s) 155
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 1323
FauI CCCGC 2 cut(s) 849, 1198
Fnu4HI GCNGC 5 cut(s) 69, 315, 736, 767, 1450
FokI GGATG 3 cut(s) 389, 633, 988
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 5 cut(s) 69, 315, 736, 767, 1450
FspBI CTAG 3 cut(s) 20, 989, 1215
GluI GCNGC 5 cut(s) 69, 315, 736, 767, 1450
GsuI CTGGAG 2 cut(s) 50, 955
HaeIII GGCC 5 cut(s) 60, 233, 422, 507, 1344
HgaI GACGC 2 cut(s) 20, 149
HincII GTYRAC 2 cut(s) 103, 139
HindII GTYRAC 2 cut(s) 103, 139
HindIII AAGCTT 1 cut(s) 461
HphI GGTGA 6 cut(s) 201, 346, 584, 601, 871, 1136
Hpy166II GTNNAC 2 cut(s) 103, 139
Hpy188I TCNGA 3 cut(s) 52, 689, 1043
Hpy188III TCNNGA 8 cut(s) 112, 554, 794, 872, 894, 1238, 1394, 1432
Hpy8I GTNNAC 2 cut(s) 103, 139
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 3 cut(s) 105, 164, 1159
HpyCH4V TGCA 7 cut(s) 220, 268, 317, 565, 755, 1073, 1337
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 197, 274, 314, 452, 862, 1186
HpyF3I CTNAG 2 cut(s) 493, 1209
HpySE526I ACGT 3 cut(s) 105, 164, 1159
LmnI GCTCC 2 cut(s) 523, 820
Lsp1109I GCAGC 3 cut(s) 80, 301, 747
LweI GCATC 3 cut(s) 699, 742, 966
MaeI CTAG 3 cut(s) 20, 989, 1215
MaeII ACGT 3 cut(s) 105, 164, 1159
MaeIII GTNAC 2 cut(s) 352, 1124
MboII GAAGA 4 cut(s) 272, 854, 1144, 1331
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 3 cut(s) 280, 363, 1396
MhlI GDGCHC 2 cut(s) 310, 509
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 6 cut(s) 263, 511, 671, 721, 1148, 1270
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 5 cut(s) 47, 124, 544, 884, 1305
MmeI TCCRAC 2 cut(s) 391, 1246
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 1323
MscI TGGCCA 1 cut(s) 233
MseI TTAA 2 cut(s) 153, 441
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 71, 856
MspR9I CCNGG 4 cut(s) 29, 230, 311, 973
MunI CAATTG 1 cut(s) 671
MvaI CCWGG 4 cut(s) 29, 230, 311, 973
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 7 cut(s) 11, 197, 274, 314, 452, 862, 1186
NcoI CCATGG 1 cut(s) 121
NlaIV GGNNCC 3 cut(s) 507, 508, 1343
NmuCI GTSAC 2 cut(s) 352, 1124
NspI RCATGY 3 cut(s) 374, 1171, 1282
PaeR7I CTCGAG 1 cut(s) 552
PagI TCATGA 3 cut(s) 793, 871, 1237
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 1323
PfeI GAWTC 6 cut(s) 16, 81, 559, 788, 868, 1182
PflFI GACNNNGTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 971
PkrI GCNGC 5 cut(s) 70, 316, 737, 768, 1451
PleI GAGTC 5 cut(s) 47, 123, 544, 883, 1305
PpsI GAGTC 5 cut(s) 47, 123, 544, 883, 1305
PscI ACATGT 1 cut(s) 370
PsiI TTATAA 1 cut(s) 1197
Psp1406I AACGTT 1 cut(s) 105
Psp6I CCWGG 4 cut(s) 27, 228, 309, 971
PspGI CCWGG 4 cut(s) 27, 228, 309, 971
PspN4I GGNNCC 3 cut(s) 507, 508, 1343
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 4 cut(s) 58, 505, 506, 1342
PstI CTGCAG 1 cut(s) 567
PsuI RGATCY 3 cut(s) 280, 363, 1396
PsyI GACNNNGTC 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 4 cut(s) 663, 983, 1019, 1140
RsaNI GTAC 4 cut(s) 662, 982, 1018, 1139
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 153, 441
SatI GCNGC 5 cut(s) 69, 315, 736, 767, 1450
Sau96I GGNCC 4 cut(s) 58, 505, 506, 1342
ScaI AGTACT 2 cut(s) 1019, 1140
SchI GAGTC 5 cut(s) 47, 124, 544, 884, 1305
ScrFI CCNGG 4 cut(s) 29, 230, 311, 973
SduI GDGCHC 2 cut(s) 310, 509
SfaNI GCATC 3 cut(s) 699, 742, 966
SfcI CTRYAG 2 cut(s) 563, 1026
Sfr274I CTCGAG 1 cut(s) 552
SlaI CTCGAG 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 6 cut(s) 263, 511, 671, 721, 1148, 1270
SsiI CCGC 6 cut(s) 612, 767, 856, 1052, 1191, 1450
SspMI CTAG 3 cut(s) 20, 989, 1215
StyD4I CCNGG 4 cut(s) 27, 228, 309, 971
StyI CCWWGG 3 cut(s) 121, 828, 1453
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 3 cut(s) 108, 167, 1162
TaqI TCGA 8 cut(s) 84, 553, 1060, 1108, 1172, 1353, 1393, 1416
TasI AATT 6 cut(s) 263, 511, 671, 721, 1148, 1270
TatI WGTACW 3 cut(s) 981, 1017, 1138
TauI GCSGC 2 cut(s) 769, 1452
TfiI GAWTC 6 cut(s) 16, 81, 559, 788, 868, 1182
Tru1I TTAA 2 cut(s) 153, 441
Tru9I TTAA 2 cut(s) 153, 441
TscAI CASTG 2 cut(s) 501, 657
TseFI GTSAC 2 cut(s) 352, 1124
TseI GCWGC 3 cut(s) 68, 314, 735
Tsp45I GTSAC 2 cut(s) 352, 1124
TspDTI ATGAA 4 cut(s) 195, 860, 1062, 1254
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 2 cut(s) 501, 657
Tth111I GACNNNGTC 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 2 cut(s) 1148, 1270
XceI RCATGY 3 cut(s) 374, 1171, 1282
XhoI CTCGAG 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 1323
XspI CTAG 3 cut(s) 20, 989, 1215
ZrmI AGTACT 2 cut(s) 1019, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.