Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005162

Physical Location & Seq

Genomic Coordinates Reverse (-)

48720105 .. 48721699

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCAATGGCGGCAGATCAACACCCAAGAAAAGAAATACTGGAGAAGTCATGGGTGCTGACTGAAGAAGGAAAGGAATATGCTGCTGATGGATCACCTGAAGTGCAAGTGTTTTTGGCCATACCAGCAGAAGGCATCACACAAAACGGGGATTGGAAGGAATTGGAATTCAAAGATTTCAACTTGAATGCTCAAGGTATGCCAAGTAAATCTGGTGCATTACATCCATTCTTGAAGGTAAGGAAGCAAGTGAAGGATATTTTCATACAGATGGGGTATGAGGAGATGGCTACTAACAACTATATTGAGAGCAGCTTCTGGAACTTCGACGCGCTCTTCCAGCCGCAGCAACACCCTGCCCGCGATTCACACGATACATTCTTCCTGAGAACCCCTTCAACTACCAAGGAGCTTCCTGAAGATTATGTTGAGCGCGTGAAGCGTGTGCACGAGAGTGGTGGTTATGAGTCCAGGGGATATGGTTGTGATTGGAAAAGAGAGGAAGCAGAGAAAAATCTTCTTAGGACACACGCCACTGCTGTCTCTTCCAGGATACTTTACTTGCTAGCCAAGGAAGCCCAGCAACGTCCTTTTGCTCCCAAAAAGTACTTCTCTATTGATCGTGTGTTCCGAAACGAATCAGTAGATCGAACACATCTTGCAGAGTTCCACCAAATAGAAGGTTGGATATGTGACCGAGGGCTTACTCTTGGTAATTTGATGGGAGTCCTCGAAGACTTCTTCAAGAGGCTGGGCATGTCCAAGCTGAAATTCAAGCCAGCTTATAATCCTTATACTGAGCCTAGCATGGAGATTTTCGGCTATCATAAGGGTTTTCGGAAGTGGGTGGAGATTGGAAATTCTGGCATGTGCAGACCAGAAATGTTGCGTCCTATGGGATTCCCAGAAGATGTTGAGGTTATTGCATGGGGCCTCTCGCTCGAAAGACCAGCCATGATACTCTACGAGATCGATAACATTCGAGAAATGTTTGGACATCAAGTTGATCTTGGTTTTATCAAGAGAAACCCAATTTGCCGCCTTGGATTGTCTCATAACATCGAATGCCACCCGCAACTCATATCTATAGTCATTGATTTTGCGATGTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

372

Amino Acids

42.89

Weight (kDa)

5.99

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	60 - 341	1.1e-89	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39280 AT4G39280
fragaria_vesca	FvH4_2g08790 FvH4_2g08790 FvH4_3g28200 FvH4_3g28200
malus_domestica	MD05G1066200.v1.1 MD10G1076200.v1.1
prunus_persica	Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1
pyrus_communis	pycom10g05960
rosa_chinensis	RchiOBHm_Chr6g0264251 RchiOBHm_Chr7g0204471
rosa_laevigata	RLG00000003457 RLG00000014275
rosa_multiflora	Rmu_co8442849.1_g000001 Rmu_sc0010483.1_g000023
rosa_roxburghii	Rroxscaffold_176G00431660 Rroxscaffold_3G00253060
rosa_rugosa	Rorug06G0011500 Rorug07G0084400
rosa_samantha	Rh6AG130900 Rh6BG128000 Rh6CG126400 Rh6DG113500 Rh7AG213800 Rh7CG226600 Rh7DG221200
rosa_wichuraiana	Rw6G011440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AccII	CGCG	3 cut(s)	332, 363, 435
AciI	CCGC	5 cut(s)	11, 344, 361, 1039, 1073
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	167, 770, 859
AcuI	CTGAAG	3 cut(s)	84, 120, 438
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	7 cut(s)	172, 181, 187, 235, 399, 745, 775
AjnI	CCWGG	2 cut(s)	470, 548
AjuI	GAANNNNNNNTTGG	4 cut(s)	593, 625, 755, 787
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	315, 412, 766, 782
AluI	AGCT	4 cut(s)	315, 412, 766, 782
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	547, 1056
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	318
AoxI	GGCC	2 cut(s)	117, 931
ApaLI	GTGCAC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	83, 312, 346
ApoI	RAATTY	3 cut(s)	167, 770, 859
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	334, 435
AspS9I	GGNCC	1 cut(s)	931
AsuHPI	GGTGA	1 cut(s)	87
AsuNHI	GCTAGC	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	119
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	70, 324, 358
BccI	CCATC	4 cut(s)	83, 265, 280, 715
BciT130I	CCWGG	2 cut(s)	472, 550
BciVI	GTATCC	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	547, 1056
BfaI	CTAG	3 cut(s)	566, 804, 1110
BfmI	CTRYAG	1 cut(s)	1086
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	6 cut(s)	12, 84, 313, 344, 347, 1039
BlsI	GCNGC	6 cut(s)	13, 85, 314, 345, 348, 1040
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	2 cut(s)	472, 550
BmgT120I	GGNCC	1 cut(s)	931
BmiI	GGNNCC	1 cut(s)	932
BmrFI	CCNGG	2 cut(s)	472, 550
BmsI	GCATC	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	972
BsaJI	CCNNGG	5 cut(s)	405, 471, 570, 697, 1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	472, 550
BseCI	ATCGAT	1 cut(s)	972
BseDI	CCNNGG	5 cut(s)	405, 471, 570, 697, 1042
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	377, 789
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	70, 324, 358
BseYI	CCCAGC	2 cut(s)	579, 751
BsgI	GTGCAG	1 cut(s)	892
Bsh1236I	CGCG	3 cut(s)	332, 363, 435
BshFI	GGCC	2 cut(s)	119, 933
BshVI	ATCGAT	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	547, 1056
BsmI	GAATGC	2 cut(s)	193, 1070
BsnI	GGCC	2 cut(s)	119, 933
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
BspACI	CCGC	5 cut(s)	11, 344, 361, 1039, 1073
BspANI	GGCC	2 cut(s)	119, 933
BspCNI	CTCAG	2 cut(s)	378, 790
BspDI	ATCGAT	1 cut(s)	972
BspFNI	CGCG	3 cut(s)	332, 363, 435
BspLI	GGNNCC	1 cut(s)	932
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	5 cut(s)	405, 471, 570, 697, 1042
BssMI	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	3 cut(s)	405, 570, 1042
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	2 cut(s)	472, 550
Bst6I	CTCTTC	2 cut(s)	341, 550
BstC8I	GCNNGC	3 cut(s)	361, 567, 780
BstDEI	CTNAG	3 cut(s)	386, 521, 798
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	3 cut(s)	332, 363, 435
BstHHI	GCGC	2 cut(s)	334, 435
BstKTI	GATC	6 cut(s)	19, 95, 622, 649, 972, 1009
BstMAI	GTCTC	2 cut(s)	547, 1056
BstMBI	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 125, 340, 439, 575
BstNI	CCWGG	2 cut(s)	472, 550
BstNSI	RCATGY	2 cut(s)	760, 871
BstSCI	CCNGG	2 cut(s)	470, 548
BstSFI	CTRYAG	1 cut(s)	1086
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	3 cut(s)	332, 363, 435
BstV1I	GCAGC	3 cut(s)	70, 324, 358
BstV2I	GAAGAC	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	972
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	119, 933
BsuTUI	ATCGAT	1 cut(s)	972
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	361, 567, 780
CaiI	CAGNNNCTG	1 cut(s)	318
CfoI	GCGC	2 cut(s)	334, 435
Cfr13I	GGNCC	1 cut(s)	931
ClaI	ATCGAT	1 cut(s)	972
CseI	GACGC	2 cut(s)	338, 878
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	6 cut(s)	51, 757, 808, 868, 927, 955
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	3 cut(s)	386, 521, 798
DpnI	GATC	6 cut(s)	18, 94, 621, 648, 971, 1008
DpnII	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	341, 550
EarI	CTCTTC	2 cut(s)	341, 550
Eco130I	CCWWGG	3 cut(s)	405, 570, 1042
Eco57I	CTGAAG	3 cut(s)	84, 120, 438
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	470, 548
EcoT14I	CCWWGG	3 cut(s)	405, 570, 1042
ErhI	CCWWGG	3 cut(s)	405, 570, 1042
FaeI	CATG	6 cut(s)	54, 760, 811, 871, 930, 958
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FatI	CATG	6 cut(s)	50, 756, 807, 867, 926, 954
FauI	CCCGC	2 cut(s)	368, 1080
Fnu4HI	GCNGC	6 cut(s)	12, 84, 313, 344, 347, 1039
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	6 cut(s)	12, 84, 313, 344, 347, 1039
FspBI	CTAG	3 cut(s)	566, 804, 1110
GlaI	GCGC	2 cut(s)	333, 434
GluI	GCNGC	6 cut(s)	12, 84, 313, 344, 347, 1039
GsaI	CCCAGC	2 cut(s)	583, 755
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	119, 933
HgaI	GACGC	2 cut(s)	338, 878
HhaI	GCGC	2 cut(s)	334, 435
Hin1II	CATG	6 cut(s)	54, 760, 811, 871, 930, 958
Hin6I	GCGC	2 cut(s)	332, 433
HinP1I	GCGC	2 cut(s)	332, 433
HinfI	GANTC	5 cut(s)	365, 467, 638, 726, 900
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	632, 840
Hpy188III	TCNNGA	7 cut(s)	232, 319, 385, 416, 745, 983, 1021
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	7 cut(s)	62, 125, 151, 229, 247, 405, 674
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	6 cut(s)	106, 218, 448, 662, 873, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 125, 340, 439, 575
HpyF3I	CTNAG	3 cut(s)	386, 521, 798
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	6 cut(s)	54, 760, 811, 871, 930, 958
HspAI	GCGC	2 cut(s)	332, 433
Kzo9I	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	409, 601
Lsp1109I	GCAGC	3 cut(s)	70, 324, 358
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	3 cut(s)	566, 804, 1110
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	6 cut(s)	18, 94, 621, 648, 971, 1008
MboI	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
MboII	GAAGA	9 cut(s)	77, 328, 373, 431, 509, 537, 733, 746, 920
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	6 cut(s)	161, 167, 715, 770, 859, 1032
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	476, 735
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	7 cut(s)	274, 493, 692, 740, 741, 910, 944
Mox20I	TGGCCA	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	1 cut(s)	1114
MslI	CAYNNNNRTG	2 cut(s)	269, 453
Msp20I	TGGCCA	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	472, 550
Mva1269I	GAATGC	2 cut(s)	193, 1070
MvaI	CCWGG	2 cut(s)	472, 550
MvnI	CGCG	3 cut(s)	332, 363, 435
MwoI	GCNNNNNNNGC	5 cut(s)	11, 125, 340, 439, 575
NdeII	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	6 cut(s)	54, 760, 811, 871, 930, 958
NlaIV	GGNNCC	1 cut(s)	932
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	2 cut(s)	760, 871
OliI	CACNNNNGTG	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PctI	GAATGC	2 cut(s)	193, 1070
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	365, 638, 900
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	6 cut(s)	13, 85, 314, 345, 348, 1040
PleI	GAGTC	2 cut(s)	475, 734
PpsI	GAGTC	2 cut(s)	475, 734
PsiI	TTATAA	1 cut(s)	786
Psp6I	CCWGG	2 cut(s)	470, 548
PspFI	CCCAGC	2 cut(s)	579, 751
PspGI	CCWGG	2 cut(s)	470, 548
PspN4I	GGNNCC	1 cut(s)	932
PspPI	GGNCC	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	2 cut(s)	269, 453
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	1114
SatI	GCNGC	6 cut(s)	12, 84, 313, 344, 347, 1039
Sau3AI	GATC	6 cut(s)	16, 92, 619, 646, 969, 1006
Sau96I	GGNCC	1 cut(s)	931
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	2 cut(s)	476, 735
ScrFI	CCNGG	2 cut(s)	472, 550
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	2 cut(s)	269, 453
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	6 cut(s)	161, 167, 715, 770, 859, 1032
SsiI	CCGC	5 cut(s)	11, 344, 361, 1039, 1073
SspMI	CTAG	3 cut(s)	566, 804, 1110
StyD4I	CCNGG	2 cut(s)	470, 548
StyI	CCWWGG	3 cut(s)	405, 570, 1042
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	7 cut(s)	327, 649, 732, 942, 972, 982, 1062
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	6 cut(s)	161, 167, 715, 770, 859, 1032
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	3 cut(s)	14, 346, 1041
TfiI	GAWTC	3 cut(s)	365, 638, 900
Tru1I	TTAA	1 cut(s)	1114
Tru9I	TTAA	1 cut(s)	1114
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	3 cut(s)	83, 312, 346
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	446
XapI	RAATTY	3 cut(s)	167, 770, 859
XceI	RCATGY	2 cut(s)	760, 871
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	3 cut(s)	566, 804, 1110
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.