Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0005162

Physical Location & Seq

Genomic Coordinates Forward (+)

1517875 .. 1524432

Gene Structure 6558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGCGGATTCAGACCCCAAAAGAGCGAAGGCGGAGGAGGCCGTGCTCCGATATCTAGAGAACAACTCCGATATCCCGGACTCTCATATCTTCGCTGCCCAAGCCAAACTCAACCACGACGACATCGCCAATGCTATTAAGAGTCTCACTGGTCACAGATACGTTGACTCTCAGGAGATTACAAGGGAGACATGGTTGCTCACTGAGGAAGGGAAGACATATGCTGGTCATGGAACGCCAGAAGTGCGGCTCTTCCGGTCCATACCGCAAGAGGGCATCACAAAAGATGAATTGCAGAAAAAGTTTGATGCATCGATTTTCAAAATAGCTTGCGCCCAGGCTGCAAAGAATAAATGGGTGGACTTTGGAAAGCAACTAGTGACCAGAAAGATCCAACATGTGGATAATGACAAGGTCCAAACTTTGCTTCTACGGATACAGGACGCAAAGGAAATTCAGGACATCAGCCAAGATGACATCAAGGCTCTCAGCAAAAGAAAGCTTATTTCTCTACAAGTGACGAAAGGCTTTTCAGTAAGAAGAGGTCTCAATTATGCTCCTCAGAGAAAGAAAGTTGCTACAGATTTGACTCGAGATATGCTGCAGAGCGGTGATTGGAAAGATCTGGAGTACAAAGACTTTAACTTGAACGCTAAAGAGTTTAAAGCTATTTTTTTGAATGGCATTGCTGAAGCTGAATCTGCCAATTTTCAGGTACGGAAGCAATTGAAAGACATTTTCCTTCAAATGGGGTTTGGAGAGATGCCCACTAATAACTATGTCGAGAGCAGCTTCTGGAACTTTGATGCTCTTTTCCAGCCGCAACAACACCCTGCTCGTGATTCACATGATACATTCTTCCTGAAAGTTCCTTCAACTACTAAGGAACTTCCTGAAGATTATGTTGAGAGGGTGAAGCGTATACATGAGTCTGGTGGTCATCAGTCCAGGGGTTATGGATATGATTGGAAAAGAGAGGAAGCTGATAAGAATCTTCTGCGGACTCACACAACTGCTGTTTCCTCCAGGATGCTTTACAAGCTAGCAAAGGATTGTGCACAGAAACCTTTCACTCCCAAGAAGTACTTTTCTATAGATCGTGTTTTCAGAAATGAAGCAGTAGATCGAACACATCTTGCAGAGTTCCACCAAATAGAAGGTTTGATATGTGATCGAGGGCTTACTCTGGGCGACTTGATAGGAGTCCTCCAAGACTTCTTCTCACGGCTAGGCATGTCCGATCTGAAATTCAAACCAGCCTATAATCCATATACTGAGCCTAGCATGGAGATTTTCGGTTATCATAAAGGCTTTGGCAAGTATGTAGAAATTGGAAACTCTGGCATGTTCCGGCCTGAAATGTTGCTTCCTATGGGACTCCCAGAAGATGTCAGTGTTATTGCATGGGGCCTCTCCCTGGAAAGACCAACCATGATTCTCTATGGCATTGACAACATTCGAGATCTTTTTGGGCACAAGGTCGATCTAGGTCTCATCAAGAAAAACCCCATCTGTCGGATTGGATTAGAATCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

512

Amino Acids

58.66

Weight (kDa)

7.68

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PheRS_DBD3	PF18553	79 - 134	1.4e-12	PheRS DNA binding domain 3
tRNA-synt_2d	PF01409	238 - 496	1.9e-84	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39280 AT4G39280
fragaria_vesca	FvH4_2g08790 FvH4_2g08790 FvH4_3g28200 FvH4_3g28200
malus_domestica	MD05G1066200.v1.1 MD10G1076200.v1.1
prunus_persica	Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1
pyrus_communis	pycom10g05960
rosa_chinensis	RchiOBHm_Chr6g0264251 RchiOBHm_Chr7g0204471
rosa_laevigata	RLG00000003457 RLG00000014275
rosa_multiflora	Rmu_co8442849.1_g000001 Rmu_sc0010483.1_g000023
rosa_roxburghii	Rroxscaffold_176G00431660 Rroxscaffold_3G00253060
rosa_rugosa	Rorug06G0011500 Rorug07G0084400
rosa_samantha	Rh6AG130900 Rh6BG128000 Rh6CG126400 Rh6DG113500 Rh7AG213800 Rh7CG226600 Rh7DG221200
rosa_wichuraiana	Rw6G011440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccBSI	CCGCTC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	922
AciI	CCGC	7 cut(s)	5, 32, 247, 266, 609, 821, 1000
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	453, 1247
AcuI	CTGAAG	2 cut(s)	711, 915
AfaI	GTAC	3 cut(s)	632, 717, 1085
AfiI	CCNNNNNNNGG	5 cut(s)	272, 400, 748, 1417, 1515
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	7 cut(s)	322, 649, 679, 730, 746, 876, 1252
AhlI	ACTAGT	1 cut(s)	376
AjnI	CCWGG	4 cut(s)	336, 947, 1025, 1416
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	7 cut(s)	329, 502, 668, 695, 792, 983, 1042
AluI	AGCT	7 cut(s)	329, 502, 668, 695, 792, 983, 1042
Alw21I	GWGCWC	2 cut(s)	48, 1060
Alw26I	GTCTC	4 cut(s)	149, 182, 551, 1496
Alw44I	GTGCAC	1 cut(s)	1056
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	795
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	3 cut(s)	39, 1352, 1408
ApaLI	GTGCAC	1 cut(s)	1056
ApeKI	GCWGC	4 cut(s)	95, 341, 601, 789
ApoI	RAATTY	2 cut(s)	453, 1247
Asp700I	GAANNNNTTC	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	258, 415, 1408
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	623, 925
AsuNHI	GCTAGC	1 cut(s)	1042
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	2 cut(s)	258, 415
BaeGI	GKGCMC	2 cut(s)	1060, 1476
BauI	CACGAG	1 cut(s)	837
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	48, 1060
BbvI	GCAGC	4 cut(s)	82, 328, 588, 801
BccI	CCATC	1 cut(s)	1517
BceAI	ACGGC	2 cut(s)	26, 1241
BciT130I	CCWGG	4 cut(s)	338, 949, 1027, 1418
BciVI	GTATCC	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	4 cut(s)	149, 182, 551, 1496
BcuI	ACTAGT	1 cut(s)	376
BfaI	CTAG	6 cut(s)	56, 377, 1043, 1229, 1281, 1487
BfmI	CTRYAG	3 cut(s)	579, 602, 1092
BfuI	GTATCC	1 cut(s)	429
BglII	AGATCT	2 cut(s)	622, 1462
BisI	GCNGC	6 cut(s)	96, 248, 342, 602, 790, 821
BlsI	GCNGC	6 cut(s)	97, 249, 343, 603, 791, 822
BmcAI	AGTACT	1 cut(s)	1085
Bme1390I	CCNGG	5 cut(s)	77, 338, 949, 1027, 1418
Bme18I	GGWCC	2 cut(s)	258, 415
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	3 cut(s)	258, 415, 1408
BmiI	GGNNCC	1 cut(s)	1409
BmrFI	CCNGG	5 cut(s)	77, 338, 949, 1027, 1418
BmsI	GCATC	6 cut(s)	285, 298, 320, 753, 796, 1020
BmtI	GCTAGC	1 cut(s)	1046
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	2 cut(s)	647, 1009
BpuMI	CCSGG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	314
BsaBI	GATNNNNATC	2 cut(s)	990, 1528
BsaI	GGTCTC	2 cut(s)	551, 1496
BsaJI	CCNNGG	3 cut(s)	336, 948, 1416
BsaWI	WCCGGW	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 400, 748, 1417, 1515
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	2 cut(s)	990, 1528
BseBI	CCWGG	4 cut(s)	338, 949, 1027, 1418
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	336, 948, 1416
BseGI	GGATG	1 cut(s)	1035
BseJI	GATNNNNATC	2 cut(s)	990, 1528
BseLI	CCNNNNNNNGG	5 cut(s)	272, 400, 748, 1417, 1515
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	5 cut(s)	185, 195, 502, 575, 1266
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	2 cut(s)	50, 549
BseSI	GKGCMC	2 cut(s)	1060, 1476
BseXI	GCAGC	4 cut(s)	82, 328, 588, 801
BshFI	GGCC	3 cut(s)	41, 1354, 1410
BshVI	ATCGAT	1 cut(s)	314
BsiHKAI	GWGCWC	2 cut(s)	48, 1060
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	77, 256, 1351
BslFI	GGGAC	1 cut(s)	1389
BslI	CCNNNNNNNGG	5 cut(s)	272, 400, 748, 1417, 1515
BsmAI	GTCTC	4 cut(s)	149, 182, 551, 1496
BsmFI	GGGAC	1 cut(s)	1389
BsnI	GGCC	3 cut(s)	41, 1354, 1410
Bso31I	GGTCTC	2 cut(s)	551, 1496
BsoBI	CYCGRG	1 cut(s)	591
Bsp1286I	GDGCHC	3 cut(s)	48, 1060, 1476
Bsp143I	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
BspACI	CCGC	7 cut(s)	5, 32, 247, 266, 609, 821, 1000
BspANI	GGCC	3 cut(s)	41, 1354, 1410
BspCNI	CTCAG	5 cut(s)	184, 196, 501, 574, 1267
BspDI	ATCGAT	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	1409
BspMAI	CTGCAG	1 cut(s)	606
BspOI	GCTAGC	1 cut(s)	1046
BspPI	GGATC	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	257
BspTNI	GGTCTC	2 cut(s)	551, 1496
BsrBI	CCGCTC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	336, 948, 1416
BssMI	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
BssNAI	GTATAC	1 cut(s)	923
BssSI	CACGAG	1 cut(s)	837
Bst1107I	GTATAC	1 cut(s)	923
Bst2BI	CACGAG	1 cut(s)	837
Bst2UI	CCWGG	4 cut(s)	338, 949, 1027, 1418
Bst6I	CTCTTC	2 cut(s)	257, 535
BstC8I	GCNNGC	2 cut(s)	331, 1044
BstDEI	CTNAG	6 cut(s)	171, 204, 488, 561, 882, 1275
BstF5I	GGATG	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	8 cut(s)	393, 625, 1099, 1126, 1174, 1243, 1465, 1486
BstMAI	GTCTC	4 cut(s)	149, 182, 551, 1496
BstMBI	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 101, 244, 341, 701, 1039
BstNI	CCWGG	4 cut(s)	338, 949, 1027, 1418
BstNSI	RCATGY	3 cut(s)	401, 1237, 1348
BstSCI	CCNGG	5 cut(s)	75, 336, 947, 1025, 1416
BstSFI	CTRYAG	3 cut(s)	579, 602, 1092
BstSLI	GKGCMC	2 cut(s)	1060, 1476
BstV1I	GCAGC	4 cut(s)	82, 328, 588, 801
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	390, 622, 1462
BstYI	RGATCY	3 cut(s)	390, 622, 1462
BstZ17I	GTATAC	1 cut(s)	923
Bsu15I	ATCGAT	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	41, 1354, 1410
BsuTUI	ATCGAT	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	1035
BtsIMutI	CAGTG	3 cut(s)	147, 201, 1399
Cac8I	GCNNGC	2 cut(s)	331, 1044
CaiI	CAGNNNCTG	1 cut(s)	795
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	258, 415, 1408
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	631, 716, 1084
CviQI	GTAC	3 cut(s)	631, 716, 1084
DdeI	CTNAG	6 cut(s)	171, 204, 488, 561, 882, 1275
DpnI	GATC	8 cut(s)	392, 624, 1098, 1125, 1173, 1242, 1464, 1485
DpnII	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
DraI	TTTAAA	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	257, 535
EarI	CTCTTC	2 cut(s)	257, 535
EciI	GGCGGA	2 cut(s)	20, 47
Eco31I	GGTCTC	2 cut(s)	551, 1496
Eco32I	GATATC	2 cut(s)	53, 73
Eco47I	GGWCC	2 cut(s)	258, 415
Eco57I	CTGAAG	2 cut(s)	711, 915
Eco88I	CYCGRG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	1408
EcoRII	CCWGG	4 cut(s)	336, 947, 1025, 1416
EcoRV	GATATC	2 cut(s)	53, 73
EcoT22I	ATGCAT	1 cut(s)	313
FalI	AAGNNNNNCTT	2 cut(s)	1070, 1102
FaqI	GGGAC	1 cut(s)	1389
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	6 cut(s)	96, 248, 342, 602, 790, 821
FokI	GGATG	1 cut(s)	1042
Fsp4HI	GCNGC	6 cut(s)	96, 248, 342, 602, 790, 821
FspBI	CTAG	6 cut(s)	56, 377, 1043, 1229, 1281, 1487
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	6 cut(s)	96, 248, 342, 602, 790, 821
GsuI	CTGGAG	2 cut(s)	647, 1009
HaeIII	GGCC	3 cut(s)	41, 1354, 1410
HapII	CCGG	3 cut(s)	77, 256, 1351
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	500
HpaII	CCGG	3 cut(s)	77, 256, 1351
HphI	GGTGA	2 cut(s)	623, 925
Hpy166II	GTNNAC	4 cut(s)	166, 361, 923, 1058
Hpy188I	TCNGA	9 cut(s)	13, 50, 70, 564, 1109, 1240, 1245, 1518, 1534
Hpy8I	GTNNAC	4 cut(s)	166, 361, 923, 1058
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	5 cut(s)	22, 203, 752, 882, 1151
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	7 cut(s)	295, 311, 344, 604, 1058, 1139, 1403
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 101, 244, 341, 701, 1039
HpyF3I	CTNAG	6 cut(s)	171, 204, 488, 561, 882, 1275
HpySE526I	ACGT	1 cut(s)	162
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	51, 562
Lsp1109I	GCAGC	4 cut(s)	82, 328, 588, 801
LweI	GCATC	6 cut(s)	285, 298, 320, 753, 796, 1020
MaeI	CTAG	6 cut(s)	56, 377, 1043, 1229, 1281, 1487
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	152, 379, 517
MalI	GATC	8 cut(s)	392, 624, 1098, 1125, 1173, 1242, 1464, 1485
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
MboII	GAAGA	9 cut(s)	82, 226, 244, 552, 850, 908, 986, 1210, 1397
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	3 cut(s)	390, 622, 1462
MhlI	GDGCHC	3 cut(s)	48, 1060, 1476
MluCI	AATT	7 cut(s)	290, 453, 550, 706, 725, 1247, 1329
MlyI	GAGTC	8 cut(s)	74, 151, 161, 583, 938, 997, 1212, 1371
MmeI	TCCRAC	2 cut(s)	418, 1496
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	1067
MseI	TTAA	4 cut(s)	138, 642, 663, 1537
MspI	CCGG	3 cut(s)	77, 256, 1351
MspR9I	CCNGG	5 cut(s)	77, 338, 949, 1027, 1418
MunI	CAATTG	1 cut(s)	725
MvaI	CCWGG	4 cut(s)	338, 949, 1027, 1418
MwoI	GCNNNNNNNGC	6 cut(s)	38, 101, 244, 341, 701, 1039
NciI	CCSGG	1 cut(s)	77
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
NheI	GCTAGC	1 cut(s)	1042
NlaIV	GGNNCC	1 cut(s)	1409
NmuCI	GTSAC	3 cut(s)	152, 379, 517
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	3 cut(s)	401, 1237, 1348
PaeR7I	CTCGAG	1 cut(s)	591
PciI	ACATGT	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	1067
PfeI	GAWTC	6 cut(s)	8, 698, 842, 991, 1435, 1529
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	400
PfoI	TCCNGGA	2 cut(s)	75, 1025
PkrI	GCNGC	6 cut(s)	97, 249, 343, 603, 791, 822
PleI	GAGTC	8 cut(s)	74, 150, 161, 583, 937, 997, 1211, 1371
PpsI	GAGTC	8 cut(s)	74, 150, 161, 583, 937, 997, 1211, 1371
PscI	ACATGT	1 cut(s)	397
Psp6I	CCWGG	4 cut(s)	336, 947, 1025, 1416
PspGI	CCWGG	4 cut(s)	336, 947, 1025, 1416
PspN4I	GGNNCC	1 cut(s)	1409
PspPI	GGNCC	3 cut(s)	258, 415, 1408
PstI	CTGCAG	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	795
PsuI	RGATCY	3 cut(s)	390, 622, 1462
PsyI	GACNNNGTC	1 cut(s)	413
RsaI	GTAC	3 cut(s)	632, 717, 1085
RsaNI	GTAC	3 cut(s)	631, 716, 1084
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	138, 642, 663, 1537
SatI	GCNGC	6 cut(s)	96, 248, 342, 602, 790, 821
Sau3AI	GATC	8 cut(s)	390, 622, 1096, 1123, 1171, 1240, 1462, 1483
Sau96I	GGNCC	3 cut(s)	258, 415, 1408
ScaI	AGTACT	1 cut(s)	1085
SchI	GAGTC	8 cut(s)	74, 151, 161, 583, 938, 997, 1212, 1371
ScrFI	CCNGG	5 cut(s)	77, 338, 949, 1027, 1418
SduI	GDGCHC	3 cut(s)	48, 1060, 1476
SfaNI	GCATC	6 cut(s)	285, 298, 320, 753, 796, 1020
SfcI	CTRYAG	3 cut(s)	579, 602, 1092
Sfr274I	CTCGAG	1 cut(s)	591
SinI	GGWCC	2 cut(s)	258, 415
SlaI	CTCGAG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
SpeI	ACTAGT	1 cut(s)	376
Sse9I	AATT	7 cut(s)	290, 453, 550, 706, 725, 1247, 1329
SsiI	CCGC	7 cut(s)	5, 32, 247, 266, 609, 821, 1000
SspMI	CTAG	6 cut(s)	56, 377, 1043, 1229, 1281, 1487
StyD4I	CCNGG	5 cut(s)	75, 336, 947, 1025, 1416
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	7 cut(s)	314, 592, 783, 1126, 1174, 1459, 1482
TasI	AATT	7 cut(s)	290, 453, 550, 706, 725, 1247, 1329
TatI	WGTACW	2 cut(s)	630, 1083
TauI	GCSGC	2 cut(s)	250, 823
TfiI	GAWTC	6 cut(s)	8, 698, 842, 991, 1435, 1529
Tru1I	TTAA	4 cut(s)	138, 642, 663, 1537
Tru9I	TTAA	4 cut(s)	138, 642, 663, 1537
TscAI	CASTG	3 cut(s)	154, 208, 1399
TseFI	GTSAC	3 cut(s)	152, 379, 517
TseI	GCWGC	4 cut(s)	95, 341, 601, 789
Tsp45I	GTSAC	3 cut(s)	152, 379, 517
TspDTI	ATGAA	2 cut(s)	303, 1128
TspGWI	ACGGA	2 cut(s)	448, 733
TspRI	CASTG	3 cut(s)	154, 208, 1399
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	1056
VpaK11BI	GGWCC	2 cut(s)	258, 415
XapI	RAATTY	2 cut(s)	453, 1247
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	3 cut(s)	401, 1237, 1348
XhoI	CTCGAG	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	922
XmnI	GAANNNNTTC	1 cut(s)	1067
XspI	CTAG	6 cut(s)	56, 377, 1043, 1229, 1281, 1487
ZrmI	AGTACT	1 cut(s)	1085
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.