Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010483.1

Orthogroup ID

OG0005162

Physical Location & Seq

Genomic Coordinates Reverse (-)

72429 .. 79403

Gene Structure 6975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010483.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggcggattcggaccccaaaagagcgaaggcggaggaggccgtgctcggatacctagagaaccacgacgatatcccggactctcatctcttcgcagaccaagctaaactcaaccacgacgacatcgccaatgctattaagagtctcaccggtcacagatacgttgactctcaggagattacaaaggagacatggttgctcaccgaggaagggaagacatatgctgttcatggaacgccagaagtgcggctcttcctgtccataccacaagagggcatcacgaaagatgagttgcagaaaaagtttgatgcatcggttttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagcaactagtggccagaaaggtacggaagcaattgaaggacattttccttcaaatggggtttggagagatgcccactaataactatgtcgagagcagcttctggaactttgatgctcttttccagccacaacaacaccctgctcgtgattcacatgatacattcttcctgaaagttccttcaactactaaggaacttcctgaagattatgttgagagggtgaagcgtatacacgagtctggtggtcatcagtccaggggttatggatatgattggaaaagagaggaagctgataagaatcttctgcggactcacacaactgctgtttcctccaggatgctttacaagctagcacaggattgtgcgcagaaacctttcactcccaagaagtacttttctatagatcgtgttttcagaaatgaagcagtagatcgaacacatcttgcagagttccaccaaatagaaggtttgatatgtgatcgagggcttactctgggcgacttgataggagtcctccaagacttcttctcacggctgggcatgtccgatctgaaattcaaaccagcctataatccatatactgagcctagcatggagattttcggttatcataaaggctttggcaagtatgtagaaattggaaactctggcatgttccggcctgaaatgttacttcctatgggactcccagaagatgtcagtgttattgcatggggcctctccctggaaagaccaaccatgattctctatggcattgacaacattcgagatctttttgggcacaaggtcgatctaggtctcatcaagaaaaaccccatctgtcggattggattagaatctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

404

Amino Acids

46.19

Weight (kDa)

6.18

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39280 AT4G39280
fragaria_vesca	FvH4_2g08790 FvH4_2g08790 FvH4_3g28200 FvH4_3g28200
malus_domestica	MD05G1066200.v1.1 MD10G1076200.v1.1
prunus_persica	Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1
pyrus_communis	pycom10g05960
rosa_chinensis	RchiOBHm_Chr6g0264251 RchiOBHm_Chr7g0204471
rosa_laevigata	RLG00000003457 RLG00000014275
rosa_multiflora	Rmu_co8442849.1_g000001 Rmu_sc0010483.1_g000023
rosa_roxburghii	Rroxscaffold_176G00431660 Rroxscaffold_3G00253060
rosa_rugosa	Rorug06G0011500 Rorug07G0084400
rosa_samantha	Rh6AG130900 Rh6BG128000 Rh6CG126400 Rh6DG113500 Rh7AG213800 Rh7CG226600 Rh7DG221200
rosa_wichuraiana	Rw6G011440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	735
AccI	GTMKAC	1 cut(s)	598
AciI	CCGC	4 cut(s)	5, 32, 247, 676
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	923
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	2 cut(s)	393, 761
AfiI	CCNNNNNNNGG	5 cut(s)	210, 272, 424, 1093, 1191
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	322, 406, 422, 552, 928
AhlI	ACTAGT	1 cut(s)	376
AjnI	CCWGG	4 cut(s)	336, 623, 701, 1092
AluBI	AGCT	5 cut(s)	104, 329, 468, 659, 718
AluI	AGCT	5 cut(s)	104, 329, 468, 659, 718
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	149, 182, 1172
AlwNI	CAGNNNCTG	1 cut(s)	471
AoxI	GGCC	4 cut(s)	39, 381, 1028, 1084
ApeKI	GCWGC	2 cut(s)	341, 465
ApoI	RAATTY	1 cut(s)	923
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	335, 736
AspS9I	GGNCC	2 cut(s)	13, 1084
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	139, 193, 601
AsuNHI	GCTAGC	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	1152
BalI	TGGCCA	1 cut(s)	383
BauI	CACGAG	2 cut(s)	513, 602
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	328, 477
BccI	CCATC	1 cut(s)	1193
BceAI	ACGGC	2 cut(s)	26, 917
BciT130I	CCWGG	4 cut(s)	338, 625, 703, 1094
BciVI	GTATCC	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	3 cut(s)	149, 182, 1172
BcuI	ACTAGT	1 cut(s)	376
BfaI	CTAG	5 cut(s)	56, 377, 719, 957, 1163
BfmI	CTRYAG	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	1138
BisI	GCNGC	3 cut(s)	248, 342, 466
BlsI	GCNGC	3 cut(s)	249, 343, 467
BmcAI	AGTACT	1 cut(s)	761
Bme1390I	CCNGG	5 cut(s)	77, 338, 625, 703, 1094
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	13, 1084
BmiI	GGNNCC	2 cut(s)	15, 1085
BmrFI	CCNGG	5 cut(s)	77, 338, 625, 703, 1094
BmsI	GCATC	6 cut(s)	285, 298, 320, 429, 472, 696
BmtI	GCTAGC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	685
BpuMI	CCSGG	1 cut(s)	77
BsaBI	GATNNNNATC	2 cut(s)	666, 1204
BsaI	GGTCTC	1 cut(s)	1172
BsaJI	CCNNGG	4 cut(s)	204, 336, 624, 1092
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	210, 272, 424, 1093, 1191
Bse118I	RCCGGY	1 cut(s)	149
Bse8I	GATNNNNATC	2 cut(s)	666, 1204
BseBI	CCWGG	4 cut(s)	338, 625, 703, 1094
BseDI	CCNNGG	4 cut(s)	204, 336, 624, 1092
BseGI	GGATG	1 cut(s)	711
BseJI	GATNNNNATC	2 cut(s)	666, 1204
BseLI	CCNNNNNNNGG	5 cut(s)	210, 272, 424, 1093, 1191
BseMII	CTCAG	2 cut(s)	185, 942
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	1152
BseXI	GCAGC	2 cut(s)	328, 477
BseYI	CCCAGC	1 cut(s)	904
BshFI	GGCC	4 cut(s)	41, 383, 1030, 1086
BshTI	ACCGGT	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	77, 150, 1027
BslFI	GGGAC	1 cut(s)	1065
BslI	CCNNNNNNNGG	5 cut(s)	210, 272, 424, 1093, 1191
BsmAI	GTCTC	3 cut(s)	149, 182, 1172
BsmFI	GGGAC	1 cut(s)	1065
BsnI	GGCC	4 cut(s)	41, 383, 1030, 1086
Bso31I	GGTCTC	1 cut(s)	1172
Bsp1286I	GDGCHC	2 cut(s)	48, 1152
Bsp143I	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
BspACI	CCGC	4 cut(s)	5, 32, 247, 676
BspANI	GGCC	4 cut(s)	41, 383, 1030, 1086
BspCNI	CTCAG	2 cut(s)	184, 943
BspLI	GGNNCC	2 cut(s)	15, 1085
BspOI	GCTAGC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	1172
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	4 cut(s)	204, 336, 624, 1092
BssMI	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
BssNAI	GTATAC	1 cut(s)	599
BssSI	CACGAG	2 cut(s)	513, 602
Bst1107I	GTATAC	1 cut(s)	599
Bst2BI	CACGAG	2 cut(s)	513, 602
Bst2UI	CCWGG	4 cut(s)	338, 625, 703, 1094
Bst6I	CTCTTC	2 cut(s)	95, 257
BstC8I	GCNNGC	2 cut(s)	331, 720
BstDEI	CTNAG	3 cut(s)	171, 558, 951
BstF5I	GGATG	1 cut(s)	711
BstHHI	GCGC	2 cut(s)	335, 736
BstKTI	GATC	6 cut(s)	775, 802, 850, 919, 1141, 1162
BstMAI	GTCTC	3 cut(s)	149, 182, 1172
BstMBI	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 101, 244, 341, 715
BstNI	CCWGG	4 cut(s)	338, 625, 703, 1094
BstNSI	RCATGY	2 cut(s)	913, 1024
BstSCI	CCNGG	5 cut(s)	75, 336, 623, 701, 1092
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	1152
BstV1I	GCAGC	2 cut(s)	328, 477
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	1138
BstYI	RGATCY	1 cut(s)	1138
BstZ17I	GTATAC	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	41, 383, 1030, 1086
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	1075
Cac8I	GCNNGC	2 cut(s)	331, 720
CaiI	CAGNNNCTG	1 cut(s)	471
CfoI	GCGC	2 cut(s)	335, 736
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	13, 1084
Csp6I	GTAC	2 cut(s)	392, 760
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	8 cut(s)	192, 230, 524, 910, 961, 1021, 1080, 1108
CviQI	GTAC	2 cut(s)	392, 760
DdeI	CTNAG	3 cut(s)	171, 558, 951
DpnI	GATC	6 cut(s)	774, 801, 849, 918, 1140, 1161
DpnII	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	95, 257
EarI	CTCTTC	2 cut(s)	95, 257
EciI	GGCGGA	2 cut(s)	20, 47
Eco31I	GGTCTC	1 cut(s)	1172
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoRII	CCWGG	4 cut(s)	336, 623, 701, 1092
EcoRV	GATATC	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	313
FaeI	CATG	8 cut(s)	195, 233, 527, 913, 964, 1024, 1083, 1111
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	1 cut(s)	1065
FatI	CATG	8 cut(s)	191, 229, 523, 909, 960, 1020, 1079, 1107
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	248, 342, 466
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	3 cut(s)	248, 342, 466
FspBI	CTAG	5 cut(s)	56, 377, 719, 957, 1163
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	2 cut(s)	334, 735
GluI	GCNGC	3 cut(s)	248, 342, 466
GsaI	CCCAGC	1 cut(s)	908
GsuI	CTGGAG	1 cut(s)	685
HaeIII	GGCC	4 cut(s)	41, 383, 1030, 1086
HapII	CCGG	3 cut(s)	77, 150, 1027
HhaI	GCGC	2 cut(s)	335, 736
Hin1II	CATG	8 cut(s)	195, 233, 527, 913, 964, 1024, 1083, 1111
Hin6I	GCGC	2 cut(s)	333, 734
HinP1I	GCGC	2 cut(s)	333, 734
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaII	CCGG	3 cut(s)	77, 150, 1027
HphI	GGTGA	3 cut(s)	139, 193, 601
Hpy166II	GTNNAC	3 cut(s)	166, 361, 599
Hpy188I	TCNGA	7 cut(s)	13, 50, 785, 916, 921, 1194, 1210
Hpy188III	TCNNGA	9 cut(s)	173, 280, 460, 472, 515, 538, 569, 1136, 1174
Hpy8I	GTNNAC	3 cut(s)	166, 361, 599
Hpy99I	CGWCG	2 cut(s)	71, 122
HpyAV	CCTTC	6 cut(s)	22, 203, 400, 428, 558, 827
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	295, 311, 344, 815, 1079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 101, 244, 341, 715
HpyF3I	CTNAG	3 cut(s)	171, 558, 951
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	8 cut(s)	195, 233, 527, 913, 964, 1024, 1083, 1111
HspAI	GCGC	2 cut(s)	333, 734
Kzo9I	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
LguI	GCTCTTC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	328, 477
LweI	GCATC	6 cut(s)	285, 298, 320, 429, 472, 696
MaeI	CTAG	5 cut(s)	56, 377, 719, 957, 1163
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	152, 1038
MalI	GATC	6 cut(s)	774, 801, 849, 918, 1140, 1161
MboI	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
MboII	GAAGA	8 cut(s)	82, 226, 244, 526, 584, 662, 886, 1073
MfeI	CAATTG	1 cut(s)	401
MflI	RGATCY	1 cut(s)	1138
MhlI	GDGCHC	2 cut(s)	48, 1152
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	3 cut(s)	401, 923, 1005
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	7 cut(s)	74, 151, 161, 614, 673, 888, 1047
MmeI	TCCRAC	1 cut(s)	1172
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	2 cut(s)	138, 1213
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	3 cut(s)	77, 150, 1027
MspR9I	CCNGG	5 cut(s)	77, 338, 625, 703, 1094
MunI	CAATTG	1 cut(s)	401
MvaI	CCWGG	4 cut(s)	338, 625, 703, 1094
MwoI	GCNNNNNNNGC	5 cut(s)	38, 101, 244, 341, 715
NciI	CCSGG	1 cut(s)	77
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	8 cut(s)	195, 233, 527, 913, 964, 1024, 1083, 1111
NlaIV	GGNNCC	2 cut(s)	15, 1085
NmuCI	GTSAC	1 cut(s)	152
NsbI	TGCGCA	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	2 cut(s)	913, 1024
PciSI	GCTCTTC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	5 cut(s)	8, 518, 667, 1111, 1205
PfoI	TCCNGGA	2 cut(s)	75, 701
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	249, 343, 467
PleI	GAGTC	7 cut(s)	74, 150, 161, 613, 673, 887, 1047
PpsI	GAGTC	7 cut(s)	74, 150, 161, 613, 673, 887, 1047
Psp6I	CCWGG	4 cut(s)	336, 623, 701, 1092
PspFI	CCCAGC	1 cut(s)	904
PspGI	CCWGG	4 cut(s)	336, 623, 701, 1092
PspN4I	GGNNCC	2 cut(s)	15, 1085
PspPI	GGNCC	2 cut(s)	13, 1084
PstNI	CAGNNNCTG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	1138
RsaI	GTAC	2 cut(s)	393, 761
RsaNI	GTAC	2 cut(s)	392, 760
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	138, 1213
SatI	GCNGC	3 cut(s)	248, 342, 466
Sau3AI	GATC	6 cut(s)	772, 799, 847, 916, 1138, 1159
Sau96I	GGNCC	2 cut(s)	13, 1084
ScaI	AGTACT	1 cut(s)	761
SchI	GAGTC	7 cut(s)	74, 151, 161, 614, 673, 888, 1047
ScrFI	CCNGG	5 cut(s)	77, 338, 625, 703, 1094
SduI	GDGCHC	2 cut(s)	48, 1152
SfaNI	GCATC	6 cut(s)	285, 298, 320, 429, 472, 696
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	376
Sse9I	AATT	3 cut(s)	401, 923, 1005
SsiI	CCGC	4 cut(s)	5, 32, 247, 676
SspMI	CTAG	5 cut(s)	56, 377, 719, 957, 1163
StyD4I	CCNGG	5 cut(s)	75, 336, 623, 701, 1092
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	5 cut(s)	459, 802, 850, 1135, 1158
TasI	AATT	3 cut(s)	401, 923, 1005
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	5 cut(s)	8, 518, 667, 1111, 1205
Tru1I	TTAA	2 cut(s)	138, 1213
Tru9I	TTAA	2 cut(s)	138, 1213
TscAI	CASTG	1 cut(s)	1075
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	341, 465
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	218, 804
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	1 cut(s)	1075
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	923
XceI	RCATGY	2 cut(s)	913, 1024
XmiI	GTMKAC	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	5 cut(s)	56, 377, 719, 957, 1163
ZrmI	AGTACT	1 cut(s)	761
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.