Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442849.1

Orthogroup ID

OG0005162

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1315

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442849.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

ccaattttcaggtacggaagcaattgaaggacattttccttcaaatggggtttggagagatgcccactaataactatgtcgagagcagcttctggaactttgatgctcttttccagccacaacaacaccctgctcgtgattcacatgatacattcttcctgaaagttccttcaactactaaggaacttcctgaagattatgttgagagggtgaagcgtatacacgagtctggtggtcatcagtccaggggttatggatatgattggaaaagagaggaagctgataagaatcttctgcggactcacacaactgctgtttcctccaggatgctttacaagctagcacagcctttttattcatgtaatgctaccttggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

125

Amino Acids

14.7

Weight (kDa)

8.06

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39280 AT4G39280
fragaria_vesca	FvH4_2g08790 FvH4_2g08790 FvH4_3g28200 FvH4_3g28200
malus_domestica	MD05G1066200.v1.1 MD10G1076200.v1.1
prunus_persica	Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1 Prupe.8G096800_v2.0.a1
pyrus_communis	pycom10g05960
rosa_chinensis	RchiOBHm_Chr6g0264251 RchiOBHm_Chr7g0204471
rosa_laevigata	RLG00000003457 RLG00000014275
rosa_multiflora	Rmu_co8442849.1_g000001 Rmu_sc0010483.1_g000023
rosa_roxburghii	Rroxscaffold_176G00431660 Rroxscaffold_3G00253060
rosa_rugosa	Rorug06G0011500 Rorug07G0084400
rosa_samantha	Rh6AG130900 Rh6BG128000 Rh6CG126400 Rh6DG113500 Rh7AG213800 Rh7CG226600 Rh7DG221200
rosa_wichuraiana	Rw6G011440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	27, 43, 173
AjnI	CCWGG	2 cut(s)	244, 322
AluBI	AGCT	3 cut(s)	89, 280, 339
AluI	AGCT	3 cut(s)	89, 280, 339
AlwNI	CAGNNNCTG	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	222
AsuNHI	GCTAGC	1 cut(s)	339
BauI	CACGAG	2 cut(s)	134, 223
BbvI	GCAGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	246, 324
BfaI	CTAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	246, 324
BmrFI	CCNGG	2 cut(s)	246, 324
BmsI	GCATC	3 cut(s)	50, 93, 317
BmtI	GCTAGC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	245, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	246, 324
BseDI	CCNNGG	2 cut(s)	245, 371
BseGI	GGATG	1 cut(s)	332
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	245, 371
BssNAI	GTATAC	1 cut(s)	220
BssSI	CACGAG	2 cut(s)	134, 223
BssT1I	CCWWGG	1 cut(s)	371
Bst1107I	GTATAC	1 cut(s)	220
Bst2BI	CACGAG	2 cut(s)	134, 223
Bst2UI	CCWGG	2 cut(s)	246, 324
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 345
BstNI	CCWGG	2 cut(s)	246, 324
BstSCI	CCNGG	2 cut(s)	244, 322
BstV1I	GCAGC	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	145, 359
CviJI	RGCY	5 cut(s)	89, 117, 280, 339, 348
CviKI_1	RGCY	5 cut(s)	89, 117, 280, 339, 348
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	244, 322
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	148, 362
FaiI	YATR	7 cut(s)	77, 146, 200, 220, 254, 260, 360
FatI	CATG	2 cut(s)	144, 358
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	306
Hin1II	CATG	2 cut(s)	148, 362
HinfI	GANTC	4 cut(s)	139, 226, 288, 300
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	5 cut(s)	81, 93, 136, 159, 190
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	21, 49, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 345
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	148, 362
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	3 cut(s)	50, 93, 317
MaeI	CTAG	1 cut(s)	340
MboII	GAAGA	3 cut(s)	147, 205, 283
MfeI	CAATTG	1 cut(s)	22
MluCI	AATT	2 cut(s)	3, 22
MlyI	GAGTC	2 cut(s)	235, 294
MnlI	CCTC	3 cut(s)	200, 267, 330
MseI	TTAA	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	246, 324
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	246, 324
MwoI	GCNNNNNNNGC	2 cut(s)	336, 345
NheI	GCTAGC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	148, 362
PfeI	GAWTC	2 cut(s)	139, 288
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	2 cut(s)	234, 294
PpsI	GAGTC	2 cut(s)	234, 294
Psp6I	CCWGG	2 cut(s)	244, 322
PspGI	CCWGG	2 cut(s)	244, 322
PstNI	CAGNNNCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	235, 294
ScrFI	CCNGG	2 cut(s)	246, 324
SetI	ASST	5 cut(s)	14, 91, 282, 341, 373
SfaNI	GCATC	3 cut(s)	50, 93, 317
Sse9I	AATT	2 cut(s)	3, 22
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	244, 322
StyI	CCWWGG	1 cut(s)	371
TaqI	TCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	3, 22
TfiI	GAWTC	2 cut(s)	139, 288
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.