Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003313

Physical Location & Seq

Genomic Coordinates Reverse (-)

15231977 .. 15233360

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G128800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATACTGAGGTACCCGAAGCTAGTAATGATCGTCTTTTTTCTGAAACTACGCTTTTAGAGTTTGAGGATGAAAAGTTATACATTTCAAATTGTTTGAAGAGCTTGGAGAGGAAGCTCTCTGAAATTTCCTGTAATGGGGTTCCCTCCAACATGCCTAATGGTGGGCAAGCTAGAAAGTATATGGATGATGAACCAATTCAAGAAGAGACTCCTAGACAAGAGAGGGTTCTATTAAATGGTCAGGTTGAAGAGAATGTTGTGCATGGACAAAAAGATTTACATGTATCTAACGGAAGCTCTGCTGCTCAAGAGGGGCCAGCTCATTCTGAAAGTTTAGGCCATGAAGAAAAAAATGATTCCGATTTCCATGGGCAAAATGATTTCATGGATCATAGAGAAACCGAGTTGGTTGTTCTGGAAAATGAAATCTCAGACCTTAATGATAGGTTGGAGGCACTAGAGACTGATCATGATTTTCTTGAGTACATGCTTTACTCTCTTCAAAATGGAAATGAAGGCCTACGGTTTGTTCAAGACATAGCTCATCAGCTGCGAGAATTGCGAAAACTTGGGACCGCTTTCAGATGTCAGTCTGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

202

Amino Acids

22.88

Weight (kDa)

4.52

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30690 AT2G30690
fragaria_vesca	FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220
malus_domestica	MD05G1203200.v1.1 MD10G1190500.v1.1
prunus_persica	Prupe.8G128800_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1
pyrus_communis	pycom05g18980 pycom10g16410
rosa_chinensis	RchiOBHm_Chr6g0289141
rosa_laevigata	RLG00000012328
rosa_multiflora	Rmu_co8268971.1_g000001 Rmu_sc0000666.1_g000028 Rmu_sc0001527.1_g000001 Rmu_sc0040302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179540
rosa_rugosa	Rorug06G0201000 Rorug06G0201000 Rorug06G0201100
rosa_samantha	Rh6AG312300 Rh6BG319200 Rh6CG325600 Rh6DG311500
rosa_wichuraiana	Rw6G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	2 cut(s)	15, 488
AfiI	CCNNNNNNNGG	2 cut(s)	138, 164
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	6 cut(s)	90, 100, 203, 251, 506, 536
AluBI	AGCT	8 cut(s)	23, 105, 118, 173, 300, 323, 545, 553
AluI	AGCT	8 cut(s)	23, 105, 118, 173, 300, 323, 545, 553
Alw26I	GTCTC	2 cut(s)	203, 458
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	3 cut(s)	317, 340, 520
ApeKI	GCWGC	2 cut(s)	305, 553
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	198
Asp718I	GGTACC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	317, 576
AvaII	GGWCC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	30, 30
BanI	GGYRCC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	292, 540
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	203, 458
BfaI	CTAG	4 cut(s)	24, 174, 216, 461
BisI	GCNGC	2 cut(s)	306, 554
BlsI	GCNGC	2 cut(s)	307, 555
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	317, 576
BmiI	GGNNCC	4 cut(s)	15, 144, 318, 577
BpuEI	CTTGAG	2 cut(s)	294, 503
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 164
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	76, 193
BseLI	CCNNNNNNNGG	2 cut(s)	138, 164
BseMII	CTCAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	292, 540
BshFI	GGCC	3 cut(s)	319, 342, 522
BshNI	GGYRCC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	138, 164
BsmAI	GTCTC	2 cut(s)	203, 458
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	319, 342, 522
Bsp143I	GATC	3 cut(s)	31, 391, 469
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	3 cut(s)	319, 342, 522
BspCNI	CTCAG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	4 cut(s)	15, 144, 318, 577
BspPI	GGATC	1 cut(s)	399
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	3 cut(s)	31, 391, 469
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	4 cut(s)	95, 201, 246, 507
BstC8I	GCNNGC	2 cut(s)	171, 321
BstDEI	CTNAG	2 cut(s)	9, 433
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	76, 193
BstKTI	GATC	3 cut(s)	34, 394, 472
BstMAI	GTCTC	2 cut(s)	203, 458
BstMBI	GATC	3 cut(s)	31, 391, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNSI	RCATGY	3 cut(s)	157, 287, 493
BstV1I	GCAGC	2 cut(s)	292, 540
BsuRI	GGCC	3 cut(s)	319, 342, 522
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	76, 193
Cac8I	GCNNGC	2 cut(s)	171, 321
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	317, 576
Csp6I	GTAC	2 cut(s)	14, 487
CviAII	CATG	8 cut(s)	154, 266, 284, 344, 371, 388, 473, 490
CviQI	GTAC	2 cut(s)	14, 487
DdeI	CTNAG	2 cut(s)	9, 433
DpnI	GATC	3 cut(s)	33, 393, 471
DpnII	GATC	3 cut(s)	31, 391, 469
Eam1104I	CTCTTC	4 cut(s)	95, 201, 246, 507
EarI	CTCTTC	4 cut(s)	95, 201, 246, 507
Eco130I	CCWWGG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	8 cut(s)	157, 269, 287, 347, 374, 391, 476, 493
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	8 cut(s)	153, 265, 283, 343, 370, 387, 472, 489
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	306, 554
FokI	GGATG	2 cut(s)	83, 200
Fsp4HI	GCNGC	2 cut(s)	306, 554
FspBI	CTAG	4 cut(s)	24, 174, 216, 461
GluI	GCNGC	2 cut(s)	306, 554
HaeIII	GGCC	3 cut(s)	319, 342, 522
Hin1II	CATG	8 cut(s)	157, 269, 287, 347, 374, 391, 476, 493
HinfI	GANTC	2 cut(s)	211, 359
Hpy188I	TCNGA	6 cut(s)	46, 124, 331, 364, 436, 587
Hpy188III	TCNNGA	6 cut(s)	203, 311, 419, 473, 482, 536
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	2 cut(s)	9, 433
Hsp92II	CATG	8 cut(s)	157, 269, 287, 347, 374, 391, 476, 493
KpnI	GGTACC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	31, 391, 469
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	4 cut(s)	145, 230, 333, 404
Lsp1109I	GCAGC	2 cut(s)	292, 540
MaeI	CTAG	4 cut(s)	24, 174, 216, 461
MalI	GATC	3 cut(s)	33, 393, 471
MboI	GATC	3 cut(s)	31, 391, 469
MboII	GAAGA	5 cut(s)	112, 218, 263, 359, 494
MluCI	AATT	4 cut(s)	91, 126, 198, 560
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	174, 432
MnlI	CCTC	7 cut(s)	4, 61, 105, 157, 219, 307, 448
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	2 cut(s)	236, 441
MspA1I	CMGCKG	1 cut(s)	553
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	31, 391, 469
NlaIII	CATG	8 cut(s)	157, 269, 287, 347, 374, 391, 476, 493
NlaIV	GGNNCC	4 cut(s)	15, 144, 318, 577
NspI	RCATGY	3 cut(s)	157, 287, 493
PagI	TCATGA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	307, 555
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	15, 144, 318, 577
PspPI	GGNCC	2 cut(s)	317, 576
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	2 cut(s)	15, 488
RsaNI	GTAC	2 cut(s)	14, 487
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	236, 441
SatI	GCNGC	2 cut(s)	306, 554
Sau3AI	GATC	3 cut(s)	31, 391, 469
Sau96I	GGNCC	2 cut(s)	317, 576
SchI	GAGTC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	309, 482
SmoI	CTYRAG	2 cut(s)	309, 482
Sse9I	AATT	4 cut(s)	91, 126, 198, 560
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	4 cut(s)	24, 174, 216, 461
StuI	AGGCCT	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	528
TasI	AATT	4 cut(s)	91, 126, 198, 560
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	236, 441
Tru9I	TTAA	2 cut(s)	236, 441
TseI	GCWGC	2 cut(s)	305, 553
TspDTI	ATGAA	6 cut(s)	87, 207, 360, 376, 441, 531
TspGWI	ACGGA	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	3 cut(s)	157, 287, 493
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	4 cut(s)	24, 174, 216, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.