Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8268971.1

Orthogroup ID

OG0003313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 281

Gene Structure 280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8268971.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 280 bp

atggcagcaaaggggaagtcatcagtacaagtgcagaggaactttgagaggtttatagccattctaacatctgcagcatgtgaatggtttttgatatttcttctgtttgttgatgcactgttatcctatctgctgactaagtttgcggtctattgcgacttgcaaaagccctgcatcttgtgctcaaggtttgaacatattactggtaatgaaagttctcaactttatgaggatctactttgcagcaaccacatatcgaagctcacatcttggatagcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

93

Amino Acids

10.61

Weight (kDa)

6.69

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30690 AT2G30690
fragaria_vesca	FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220
malus_domestica	MD05G1203200.v1.1 MD10G1190500.v1.1
prunus_persica	Prupe.8G128800_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1
pyrus_communis	pycom05g18980 pycom10g16410
rosa_chinensis	RchiOBHm_Chr6g0289141
rosa_laevigata	RLG00000012328
rosa_multiflora	Rmu_co8268971.1_g000001 Rmu_sc0000666.1_g000028 Rmu_sc0001527.1_g000001 Rmu_sc0040302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179540
rosa_rugosa	Rorug06G0201000 Rorug06G0201000 Rorug06G0201100
rosa_samantha	Rh6AG312300 Rh6BG319200 Rh6CG325600 Rh6DG311500
rosa_wichuraiana	Rw6G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	2 cut(s)	262, 278
AluI	AGCT	2 cut(s)	262, 278
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	5, 74, 243
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	17, 86, 255
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	3 cut(s)	6, 75, 244
BlsI	GCNGC	3 cut(s)	7, 76, 245
BmsI	GCATC	2 cut(s)	103, 183
BpuEI	CTTGAG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	17, 86, 255
BsgI	GTGCAG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	17, 86, 255
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	4 cut(s)	59, 169, 262, 278
CviKI_1	RGCY	4 cut(s)	59, 169, 262, 278
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
FaeI	CATG	1 cut(s)	81
FaiI	YATR	5 cut(s)	56, 79, 198, 228, 254
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	6, 75, 244
Fsp4HI	GCNGC	3 cut(s)	6, 75, 244
GluI	GCNGC	3 cut(s)	6, 75, 244
Hin1II	CATG	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	6 cut(s)	34, 74, 116, 163, 174, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	2 cut(s)	184, 189
Lsp1109I	GCAGC	3 cut(s)	17, 86, 255
LweI	GCATC	2 cut(s)	103, 183
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	30, 42, 223
MslI	CAYNNNNRTG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	81
NspI	RCATGY	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	7, 76, 245
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	82
SatI	GCNGC	3 cut(s)	6, 75, 244
Sau3AI	GATC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	53, 191, 264, 280
SfaNI	GCATC	2 cut(s)	103, 183
SfcI	CTRYAG	1 cut(s)	72
SgeI	CNNG	7 cut(s)	41, 90, 172, 183, 190, 198, 216
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SsiI	CCGC	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	257
TatI	WGTACW	1 cut(s)	25
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	3 cut(s)	5, 74, 243
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	123
XceI	RCATGY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.