pycom05g18980

Zein-binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
21919669 .. 21921782
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18980.2

Sequence Viewer

Length: 2022 bp
ATGGCAGCAAAGGGGAATCCATCTGTACATGTGCAGAAAAACTTTGAGGGGTTTGTAACCATTCTAACATCTGCAGCATGTGAATGGGTATTGATCTTTCTTCTGCTTGTCGACGGACTATTATCCTATCTGCTGACTAAATTTGCAGACTATTGCAATTTGCAAAAGCCTTGCATCTTTTGCTCCAGGTTTGAGCATGTTATAGGTAGTGAAAAACCTCAACTTTATCAGGATCTACTTTGCAGCAACCACGTATCAGAGTTCTCGTCATGGTTGTCTTGTCAAATTTATGGTACACACGATCGCAGTGGAATGTGTGAAGATTGCCTCAAGTCATACACCAAAAAGGGCAAGTCCAACCCCGAAAAACACATGCTTTCGGGTGGTAAATCGGATTCTGATATTGGAAGTTCCAGTTCAAGGAGGTCCATGCAGAACAGAAAGTTTGTCCATAGTTCTGTGGGTGTAAGGACATGCTCTTGTTGCAGTAGGCCTTGTAGACCTAGAGAAAATGCTCGTGGACAACAACGAAAATCATCTGCTTCCAAACCTAATATCCCTTTGCCACGTTTTTCAAGCCGTAGCCGTATACCTCGTAGGGATGGTTCAAAGAAGACCAGGGATAAAACTTCTGGATCAGTAACTACTCGTCGTCCTGGAAAACCTGGCTGGGATCCCTTGCCACATAGAGGACACAGAGAGTTGAGGATTAGTTCTGATACTGACTCCACTCTTCGTCCTGGAAATTTTAGCTGGGATCCCTTACCACATGTAGGATACACTAAGTTGAGGATTAGTTCTGATACTGACTCCACTCGTCGTGCTGGAAAACTTGGCTGGGATCCCTTGTCACATGTAGGATACACTGAGTTGAAGATTAGTTCTGATACCGATTCTGAGATTCCATTTTCTGATGAAGACGGTGGTAGAAGCATAATTATTGGAAATGAGGAGCATAAGAAGGAAGCTTTAGTAGTTCAATATGCTTCAGAAAAACCATTCAAAGCACAGCCAAATGGTTTGAATCCAGCAAAGCAGAGCAACATTACCACCAACCACAAGCCTTCACTTTCTGATTCAAGTGTGCAGCCAGATGGTAGCAAGAGGTCTGATGTAAAATTCTTAGGTTCGAATGTTGCTCAAGAGAATGGCTTGGATGAACTTAACTGGCAGCAAGCGAGTCAGAATTCCATCCCTTATGCATTCCCTGAGCTTATTTCACTGGATGATATCCCTCCATCATTTACTGTTGTTGAAAAGACAGGTTTTGCTGGGACAAGCGACTTTGGAGATGCATCCATCAGTAAAAACGATGAACTTTTGAAGTCTATAAGTGCAACAGATGGAGCACCTATTAAAACTGATCTTATCATCAACGATCCAGATCTTACGAAGCCGAATCATATTAATGGAAATGCTGTGTCTGAGTCAGCAGGCATTGGTAAGGAAGGAGATTCTATTAAAGAACAACCTCCAGTGAAGGTACTTGATAGAGTTGATGGGGAAGTGAAACCAGCGAACTCACAAAGTTCTTCTGCTCAGGAGAGAAATTTATCATCAAATAATACAATTACAGGGGTACATGGTGTTGGTGATGAAAAACTGGTAGCTGATGCTTCCGATTCTTCTGCTCAAGAGAGTAATTTATCATCACATAAAACAAGTTCAGCGGTACTTGGTGTTGGTGATAAAACGCTGGTAACTGATGCTTCCAAATCTTCTGCTCAGGAGAGTAATTTATCATCAAATAATACAATTTCAGTGGTATGTGGTGTTGGTGATGAAAAGCCGGTACCAGATGCTTCCAACTCTTCTGCTCACAACAGTAATTTATCATCAAATAATACAATTTCAGGGGTACGTGGTGGTGGTGATGAAAAGCTGGTAACTGATGCTTCCAATTCTAATCCAAATCCGGGGCTTAAAACATCATGGTCAGTAGAATCTCTGGATGGAGGATATGTTAGTGAAATTGAAGGTGAAAGTATTGTTGATCGATCTTTTGTCCCAACGACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

674

Amino Acids

72.45

Weight (kDa)

6.37

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1792
AccB1I GGYRCC 1 cut(s) 1792
AccI GTMKAC 3 cut(s) 111, 499, 589
AciI CCGC 1 cut(s) 1670
AclWI GGATC 9 cut(s) 240, 643, 668, 681, 752, 765, 836, 849, 1373
AcsI RAATTY 6 cut(s) 140, 285, 745, 1118, 1186, 1549
AcuI CTGAAG 1 cut(s) 972
AfaI GTAC 7 cut(s) 27, 295, 1485, 1581, 1674, 1794, 1860
AfiI CCNNNNNNNGG 5 cut(s) 420, 689, 773, 1916, 2015
AflIII ACRYGT 3 cut(s) 28, 769, 853
AjnI CCWGG 5 cut(s) 185, 617, 655, 664, 739
AluBI AGCT 5 cut(s) 753, 968, 1213, 1610, 1882
AluI AGCT 5 cut(s) 753, 968, 1213, 1610, 1882
Alw21I GWGCWC 1 cut(s) 1351
AlwI GGATC 9 cut(s) 240, 643, 668, 681, 752, 765, 836, 849, 1373
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 5 cut(s) 5, 74, 243, 1087, 1171
ApoI RAATTY 6 cut(s) 140, 285, 745, 1118, 1186, 1549
AseI ATTAAT 1 cut(s) 1407
Asp718I GGTACC 1 cut(s) 1792
AspS9I GGNCC 1 cut(s) 426
AsuC2I CCSGG 1 cut(s) 1917
AsuHPI GGTGA 5 cut(s) 1604, 1697, 1790, 1883, 1991
AsuII TTCGAA 1 cut(s) 1130
AvaII GGWCC 1 cut(s) 426
BamHI GGATCC 3 cut(s) 673, 757, 841
BanI GGYRCC 1 cut(s) 1792
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 620, 924
Bbv12I GWGCWC 1 cut(s) 1351
BbvI GCAGC 5 cut(s) 17, 86, 255, 1099, 1183
BccI CCATC 9 cut(s) 28, 596, 1088, 1199, 1246, 1307, 1337, 1493, 1946
BceAI ACGGC 2 cut(s) 564, 570
BcgI CGANNNNNNTGC 2 cut(s) 1610, 1644
BciT130I CCWGG 5 cut(s) 187, 619, 657, 666, 741
BciVI GTATCC 2 cut(s) 770, 854
BcnI CCSGG 1 cut(s) 1917
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 72
BfuI GTATCC 2 cut(s) 770, 854
BglII AGATCT 1 cut(s) 1384
BisI GCNGC 5 cut(s) 6, 75, 244, 1088, 1172
BlsI GCNGC 5 cut(s) 7, 76, 245, 1089, 1173
Bme1390I CCNGG 6 cut(s) 187, 619, 657, 666, 741, 1917
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 4 cut(s) 675, 759, 843, 1794
BmrFI CCNGG 6 cut(s) 187, 619, 657, 666, 741, 1917
BmsI GCATC 7 cut(s) 183, 1282, 1304, 1603, 1696, 1789, 1882
BpiI GAAGAC 2 cut(s) 620, 924
BpmI CTGGAG 2 cut(s) 169, 1458
Bpu10I CCTNAGC 3 cut(s) 1209, 1539, 1725
Bpu14I TTCGAA 1 cut(s) 1130
BpuEI CTTGAG 3 cut(s) 314, 1125, 1617
BpuMI CCSGG 1 cut(s) 1917
Bsa29I ATCGAT 1 cut(s) 1996
BsaAI YACGTR 2 cut(s) 253, 1862
BsaBI GATNNNNATC 1 cut(s) 1383
BsaJI CCNNGG 2 cut(s) 618, 1916
BsaXI ACNNNNNCTCC 2 cut(s) 1947, 1977
Bsc4I CCNNNNNNNGG 5 cut(s) 420, 689, 773, 1916, 2015
Bse118I RCCGGY 1 cut(s) 1789
Bse1I ACTGG 5 cut(s) 414, 1172, 1227, 1475, 1608
Bse8I GATNNNNATC 1 cut(s) 1383
BseBI CCWGG 5 cut(s) 187, 619, 657, 666, 741
BseCI ATCGAT 1 cut(s) 1996
BseDI CCNNGG 2 cut(s) 618, 1916
BseGI GGATG 6 cut(s) 607, 1162, 1191, 1231, 1295, 1957
BseJI GATNNNNATC 1 cut(s) 1383
BseLI CCNNNNNNNGG 5 cut(s) 420, 689, 773, 1916, 2015
BseMII CTCAG 6 cut(s) 858, 888, 1200, 1416, 1553, 1739
BseNI ACTGG 5 cut(s) 414, 1172, 1227, 1475, 1608
BseRI GAGGAG 1 cut(s) 965
BseXI GCAGC 5 cut(s) 17, 86, 255, 1099, 1183
BseYI CCCAGC 4 cut(s) 669, 753, 837, 1271
BsgI GTGCAG 2 cut(s) 53, 1106
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 493
BshNI GGYRCC 1 cut(s) 1792
BshVI ATCGAT 1 cut(s) 1996
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 1351
BsiSI CCGG 2 cut(s) 1790, 1916
BslFI GGGAC 2 cut(s) 1288, 1991
BslI CCNNNNNNNGG 5 cut(s) 420, 689, 773, 1916, 2015
BsmFI GGGAC 2 cut(s) 1288, 1991
BsmI GAATGC 1 cut(s) 1202
BsnI GGCC 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 1130
Bsp1286I GDGCHC 1 cut(s) 1351
Bsp1407I TGTACA 1 cut(s) 25
BspACI CCGC 1 cut(s) 1670
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 6 cut(s) 859, 889, 1201, 1417, 1552, 1738
BspDI ATCGAT 1 cut(s) 1996
BspLI GGNNCC 4 cut(s) 675, 759, 843, 1794
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 9 cut(s) 240, 643, 668, 681, 752, 765, 836, 849, 1373
BspT104I TTCGAA 1 cut(s) 1130
BspT107I GGYRCC 1 cut(s) 1792
BsrFI RCCGGY 1 cut(s) 1789
BsrGI TGTACA 1 cut(s) 25
BsrI ACTGG 5 cut(s) 414, 1172, 1227, 1475, 1608
BssAI RCCGGY 1 cut(s) 1789
BssECI CCNNGG 2 cut(s) 618, 1916
BssNAI GTATAC 1 cut(s) 590
BssSI CACGAG 1 cut(s) 516
Bst1107I GTATAC 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 5 cut(s) 187, 619, 657, 666, 741
Bst4CI ACNGT 3 cut(s) 923, 1249, 1826
Bst6I CTCTTC 2 cut(s) 738, 1816
BstAPI GCANNNNNTGC 1 cut(s) 180
BstAUI TGTACA 1 cut(s) 25
BstBAI YACGTR 2 cut(s) 253, 1862
BstBI TTCGAA 1 cut(s) 1130
BstC8I GCNNGC 2 cut(s) 1176, 1435
BstDEI CTNAG 8 cut(s) 783, 867, 897, 1123, 1209, 1425, 1539, 1725
BstF5I GGATG 6 cut(s) 607, 1162, 1191, 1231, 1295, 1957
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 180, 483
BstNI CCWGG 5 cut(s) 187, 619, 657, 666, 741
BstNSI RCATGY 7 cut(s) 32, 81, 200, 376, 477, 773, 857
BstSCI CCNGG 6 cut(s) 185, 617, 655, 664, 739, 1915
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 5 cut(s) 17, 86, 255, 1099, 1183
BstV2I GAAGAC 2 cut(s) 620, 924
BstX2I RGATCY 5 cut(s) 232, 673, 757, 841, 1384
BstYI RGATCY 5 cut(s) 232, 673, 757, 841, 1384
BstZ17I GTATAC 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 1996
BsuI GTATCC 2 cut(s) 770, 854
BsuRI GGCC 1 cut(s) 493
BsuTUI ATCGAT 1 cut(s) 1996
BtsCI GGATG 6 cut(s) 607, 1162, 1191, 1231, 1295, 1957
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 5 cut(s) 313, 864, 1220, 1482, 1767
Cac8I GCNNGC 2 cut(s) 1176, 1435
Cfr10I RCCGGY 1 cut(s) 1789
Cfr13I GGNCC 1 cut(s) 426
ClaI ATCGAT 1 cut(s) 1996
Csp6I GTAC 7 cut(s) 26, 294, 1484, 1580, 1673, 1793, 1859
CspCI CAANNNNNGTGG 2 cut(s) 1743, 1778
CviQI GTAC 7 cut(s) 26, 294, 1484, 1580, 1673, 1793, 1859
DdeI CTNAG 8 cut(s) 783, 867, 897, 1123, 1209, 1425, 1539, 1725
Eam1104I CTCTTC 2 cut(s) 738, 1816
EarI CTCTTC 2 cut(s) 738, 1816
Eco147I AGGCCT 1 cut(s) 493
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 972
EcoRI GAATTC 1 cut(s) 1186
EcoRII CCWGG 5 cut(s) 185, 617, 655, 664, 739
EcoRV GATATC 1 cut(s) 1231
EcoT22I ATGCAT 2 cut(s) 1204, 1297
FaqI GGGAC 2 cut(s) 1288, 1991
FblI GTMKAC 3 cut(s) 111, 499, 589
Fnu4HI GCNGC 5 cut(s) 6, 75, 244, 1088, 1172
FokI GGATG 6 cut(s) 614, 1169, 1178, 1238, 1282, 1964
Fsp4HI GCNGC 5 cut(s) 6, 75, 244, 1088, 1172
FspBI CTAG 1 cut(s) 504
GluI GCNGC 5 cut(s) 6, 75, 244, 1088, 1172
GsaI CCCAGC 4 cut(s) 673, 757, 841, 1275
GsuI CTGGAG 2 cut(s) 169, 1458
HaeIII GGCC 1 cut(s) 493
HapII CCGG 2 cut(s) 1790, 1916
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 966
HpaII CCGG 2 cut(s) 1790, 1916
HphI GGTGA 5 cut(s) 1604, 1697, 1790, 1883, 1991
Hpy166II GTNNAC 5 cut(s) 112, 296, 500, 521, 590
Hpy188III TCNNGA 8 cut(s) 230, 633, 1142, 1382, 1541, 1634, 1727, 1949
Hpy8I GTNNAC 5 cut(s) 112, 296, 500, 521, 590
Hpy99I CGWCG 3 cut(s) 116, 654, 822
HpyAV CCTTC 5 cut(s) 955, 1074, 1442, 1474, 1970
HpyCH4III ACNGT 3 cut(s) 923, 1249, 1826
HpyCH4IV ACGT 3 cut(s) 252, 568, 1861
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 483
HpyF3I CTNAG 8 cut(s) 783, 867, 897, 1123, 1209, 1425, 1539, 1725
HpySE526I ACGT 3 cut(s) 252, 568, 1861
KpnI GGTACC 1 cut(s) 1796
LmnI GCTCC 3 cut(s) 188, 952, 1346
Lsp1109I GCAGC 5 cut(s) 17, 86, 255, 1099, 1183
LweI GCATC 7 cut(s) 183, 1282, 1304, 1603, 1696, 1789, 1882
MaeI CTAG 1 cut(s) 504
MaeII ACGT 3 cut(s) 252, 568, 1861
MaeIII GTNAC 5 cut(s) 55, 640, 849, 1699, 1885
MflI RGATCY 5 cut(s) 232, 673, 757, 841, 1384
MhlI GDGCHC 1 cut(s) 1351
MlyI GAGTC 4 cut(s) 719, 803, 1189, 1436
MmeI TCCRAC 2 cut(s) 381, 1830
Mph1103I ATGCAT 2 cut(s) 1204, 1297
MseI TTAA 5 cut(s) 1164, 1356, 1407, 1461, 1923
MslI CAYNNNNRTG 2 cut(s) 82, 1407
MspA1I CMGCKG 1 cut(s) 1670
MspI CCGG 2 cut(s) 1790, 1916
MspR9I CCNGG 6 cut(s) 187, 619, 657, 666, 741, 1917
Mva1269I GAATGC 1 cut(s) 1202
MvaI CCWGG 5 cut(s) 187, 619, 657, 666, 741
MwoI GCNNNNNNNGC 2 cut(s) 180, 483
NciI CCSGG 1 cut(s) 1917
NlaIV GGNNCC 4 cut(s) 675, 759, 843, 1794
NmuCI GTSAC 1 cut(s) 849
NsiI ATGCAT 2 cut(s) 1204, 1297
NspI RCATGY 7 cut(s) 32, 81, 200, 376, 477, 773, 857
NspV TTCGAA 1 cut(s) 1130
PceI AGGCCT 1 cut(s) 493
PciI ACATGT 3 cut(s) 28, 769, 853
PctI GAATGC 1 cut(s) 1202
PfoI TCCNGGA 2 cut(s) 655, 739
PkrI GCNGC 5 cut(s) 7, 76, 245, 1089, 1173
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 4 cut(s) 719, 803, 1188, 1435
PpsI GAGTC 4 cut(s) 719, 803, 1188, 1435
Ppu21I YACGTR 2 cut(s) 253, 1862
PscI ACATGT 3 cut(s) 28, 769, 853
PshBI ATTAAT 1 cut(s) 1407
Psp6I CCWGG 5 cut(s) 185, 617, 655, 664, 739
PspFI CCCAGC 4 cut(s) 669, 753, 837, 1271
PspGI CCWGG 5 cut(s) 185, 617, 655, 664, 739
PspN4I GGNNCC 4 cut(s) 675, 759, 843, 1794
PspPI GGNCC 1 cut(s) 426
PsrI GAACNNNNNNTAC 2 cut(s) 589, 621
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 5 cut(s) 232, 673, 757, 841, 1384
PvuI CGATCG 1 cut(s) 304
RsaI GTAC 7 cut(s) 27, 295, 1485, 1581, 1674, 1794, 1860
RsaNI GTAC 7 cut(s) 26, 294, 1484, 1580, 1673, 1793, 1859
RseI CAYNNNNRTG 2 cut(s) 82, 1407
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 5 cut(s) 1164, 1356, 1407, 1461, 1923
SatI GCNGC 5 cut(s) 6, 75, 244, 1088, 1172
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 4 cut(s) 719, 803, 1189, 1436
ScrFI CCNGG 6 cut(s) 187, 619, 657, 666, 741, 1917
SduI GDGCHC 1 cut(s) 1351
SfaNI GCATC 7 cut(s) 183, 1282, 1304, 1603, 1696, 1789, 1882
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 1130
SinI GGWCC 1 cut(s) 426
SmiMI CAYNNNNRTG 2 cut(s) 82, 1407
SmlI CTYRAG 3 cut(s) 329, 1140, 1632
SmoI CTYRAG 3 cut(s) 329, 1140, 1632
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 1 cut(s) 1670
SspMI CTAG 1 cut(s) 504
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 6 cut(s) 185, 617, 655, 664, 739, 1915
TaaI ACNGT 3 cut(s) 923, 1249, 1826
TaiI ACGT 3 cut(s) 255, 571, 1864
TaqI TCGA 3 cut(s) 111, 1130, 1996
TatI WGTACW 1 cut(s) 25
Tru1I TTAA 5 cut(s) 1164, 1356, 1407, 1461, 1923
Tru9I TTAA 5 cut(s) 1164, 1356, 1407, 1461, 1923
TscAI CASTG 5 cut(s) 313, 871, 1227, 1482, 1767
TseFI GTSAC 1 cut(s) 849
TseI GCWGC 5 cut(s) 5, 74, 243, 1087, 1171
Tsp45I GTSAC 1 cut(s) 849
TspDTI ATGAA 6 cut(s) 930, 1173, 1329, 1611, 1797, 1890
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 5 cut(s) 313, 871, 1227, 1482, 1767
VpaK11BI GGWCC 1 cut(s) 426
VspI ATTAAT 1 cut(s) 1407
XapI RAATTY 6 cut(s) 140, 285, 745, 1118, 1186, 1549
XceI RCATGY 7 cut(s) 32, 81, 200, 376, 477, 773, 857
XmiI GTMKAC 3 cut(s) 111, 499, 589
XspI CTAG 1 cut(s) 504
Zsp2I ATGCAT 2 cut(s) 1204, 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.