Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040302.1

Orthogroup ID

OG0003313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 737

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040302.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 736 bp

atgcatgaagattatctctttcctttcaccacaagggacaactccaaccgagaaatgcatatgttttcagttggtaattcggtatcagatgttgaaagttatggttctcggaggcgtgtgccaagcagaagttgtgttcacagtcctgttcacagtcctgttcacagttctgtgggtgtagggcaatggtcttgttgctgtagtctttggggacatagaggaaagtttaaaggactaaaactcaaatcatctgggacaaaacatgccaagcctaatattcctttgccacgtttgccaaacagtagccgttcaaatcgaagccgggatagttcaaagaagatcagggataagtctccggcgtcagtcactagtcgtcgttctgcaaaagtaggagttgatcccttgtttcatgtaggatacagtgaattgaagttcttttctgatactgactcagagtttctgttttctgatggggatgatggtagcggtttaaccagtgtaaatcatgagcctaagatggaaggtttagtatgtgcttcacgatatcggcctaaagcgccaccaaatggtttgaggtcaggaaggcctagcaagcgtccccccaaacccaagcggtcactttcagaaccatggcctgtttttaggaaagcctatgatgtaaaatccttgggttcttataacgaatttgagactggcctcagtgagcttaactgtcaacaatccaataggaagtcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

245

Amino Acids

27.35

Weight (kDa)

9.93

Isoelectric Point (pI)

67.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30690 AT2G30690
fragaria_vesca	FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220
malus_domestica	MD05G1203200.v1.1 MD10G1190500.v1.1
prunus_persica	Prupe.8G128800_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1
pyrus_communis	pycom05g18980 pycom10g16410
rosa_chinensis	RchiOBHm_Chr6g0289141
rosa_laevigata	RLG00000012328
rosa_multiflora	Rmu_co8268971.1_g000001 Rmu_sc0000666.1_g000028 Rmu_sc0001527.1_g000001 Rmu_sc0040302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179540
rosa_rugosa	Rorug06G0201000 Rorug06G0201000 Rorug06G0201100
rosa_samantha	Rh6AG312300 Rh6BG319200 Rh6CG325600 Rh6DG311500
rosa_wichuraiana	Rw6G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AccB7I	CCANNNNNTGG	1 cut(s)	566
AciI	CCGC	2 cut(s)	486, 613
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	4 cut(s)	95, 312, 333, 430
AhlI	ACTAGT	1 cut(s)	368
AluBI	AGCT	1 cut(s)	706
AluI	AGCT	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	357, 683
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	4 cut(s)	548, 584, 632, 694
ApoI	RAATTY	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	19
BccI	CCATC	3 cut(s)	464, 473, 511
BceAI	ACGGC	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	357, 683
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	369, 588
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	629, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	495, 697
Bse3DI	GCAATG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	629, 666
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	465, 712
BseNI	ACTGG	2 cut(s)	495, 697
BshFI	GGCC	4 cut(s)	550, 586, 634, 696
BsiSI	CCGG	2 cut(s)	322, 356
BslFI	GGGAC	4 cut(s)	50, 225, 268, 582
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	357, 683
BsmFI	GGGAC	4 cut(s)	50, 225, 268, 582
BsnI	GGCC	4 cut(s)	550, 586, 634, 696
Bsp143I	GATC	2 cut(s)	339, 397
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	2 cut(s)	486, 613
BspANI	GGCC	4 cut(s)	550, 586, 634, 696
BspCNI	CTCAG	2 cut(s)	464, 711
BspHI	TCATGA	1 cut(s)	505
BspPI	GGATC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	495, 697
BssECI	CCNNGG	2 cut(s)	629, 666
BssMI	GATC	2 cut(s)	339, 397
BssNI	GRCGYC	1 cut(s)	359
BssT1I	CCWWGG	2 cut(s)	629, 666
Bst4CI	ACNGT	6 cut(s)	143, 155, 167, 302, 422, 713
BstACI	GRCGYC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	3 cut(s)	451, 513, 698
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	2 cut(s)	342, 400
BstMAI	GTCTC	2 cut(s)	357, 683
BstMBI	GATC	2 cut(s)	339, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 556, 592
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	550, 586, 634, 696
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	427, 502, 706
Cac8I	GCNNGC	1 cut(s)	593
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	559
CseI	GACGC	2 cut(s)	348, 584
CviAII	CATG	5 cut(s)	5, 263, 410, 506, 630
DdeI	CTNAG	3 cut(s)	451, 513, 698
DpnI	GATC	2 cut(s)	341, 399
DpnII	GATC	2 cut(s)	339, 397
DraI	TTTAAA	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	629, 666
Eco147I	AGGCCT	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	629, 666
EcoT22I	ATGCAT	2 cut(s)	6, 60
ErhI	CCWWGG	2 cut(s)	629, 666
FaeI	CATG	5 cut(s)	8, 266, 413, 509, 633
FaqI	GGGAC	4 cut(s)	50, 225, 268, 582
FatI	CATG	5 cut(s)	4, 262, 409, 505, 629
FauNDI	CATATG	1 cut(s)	60
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	2 cut(s)	369, 588
GlaI	GCGC	1 cut(s)	558
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	4 cut(s)	550, 586, 634, 696
HapII	CCGG	2 cut(s)	322, 356
HgaI	GACGC	2 cut(s)	348, 584
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	5 cut(s)	8, 266, 413, 509, 633
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	716
HindII	GTYRAC	1 cut(s)	716
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	2 cut(s)	322, 356
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	4 cut(s)	139, 151, 163, 716
Hpy188I	TCNGA	6 cut(s)	88, 111, 442, 454, 469, 625
Hpy188III	TCNNGA	3 cut(s)	506, 540, 579
Hpy8I	GTNNAC	4 cut(s)	139, 151, 163, 716
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	515, 576
HpyCH4III	ACNGT	6 cut(s)	143, 155, 167, 302, 422, 713
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	4, 58, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 556, 592
HpyF3I	CTNAG	3 cut(s)	451, 513, 698
HpySE526I	ACGT	1 cut(s)	289
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	5 cut(s)	8, 266, 413, 509, 633
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	2 cut(s)	339, 397
MaeI	CTAG	2 cut(s)	369, 588
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	364, 615
MalI	GATC	2 cut(s)	341, 399
MboI	GATC	2 cut(s)	339, 397
MboII	GAAGA	2 cut(s)	20, 349
MluCI	AATT	3 cut(s)	76, 425, 683
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	105, 212, 567, 707
Mph1103I	ATGCAT	2 cut(s)	6, 60
MseI	TTAA	3 cut(s)	228, 491, 708
MspI	CCGG	2 cut(s)	322, 356
MspR9I	CCNGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	292, 556, 592
NciI	CCSGG	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	2 cut(s)	339, 397
NlaIII	CATG	5 cut(s)	8, 266, 413, 509, 633
NmuCI	GTSAC	2 cut(s)	364, 615
NsiI	ATGCAT	2 cut(s)	6, 60
NspI	RCATGY	1 cut(s)	266
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	566
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	228, 491, 708
Sau3AI	GATC	2 cut(s)	339, 397
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	4 cut(s)	292, 526, 578, 708
SfcI	CTRYAG	1 cut(s)	199
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	3 cut(s)	76, 425, 683
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	2 cut(s)	486, 613
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	369, 588
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	2 cut(s)	629, 666
TaaI	ACNGT	6 cut(s)	143, 155, 167, 302, 422, 713
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	316
TasI	AATT	3 cut(s)	76, 425, 683
Tru1I	TTAA	3 cut(s)	228, 491, 708
Tru9I	TTAA	3 cut(s)	228, 491, 708
TscAI	CASTG	3 cut(s)	427, 502, 706
TseFI	GTSAC	2 cut(s)	364, 615
Tsp45I	GTSAC	2 cut(s)	364, 615
TspDTI	ATGAA	2 cut(s)	21, 398
TspRI	CASTG	3 cut(s)	427, 502, 706
Van91I	CCANNNNNTGG	1 cut(s)	566
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	369, 588
Zsp2I	ATGCAT	2 cut(s)	6, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.