Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0003313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1037

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1036 bp

atggcagcaaaggggaagtcatcagtacaagtgcagaggaactttgagaggtttatagccattctaacatctgcagcatgtgaatggtttttgatatttcttctgtttgttgatgcactgttatcctatctgctgactaagtttgcggtctattgcgacttgcaaaagccctgcatcttgtgctcaaggtttgaacatattactggtaatgaaagttctcaactttatgaggatctactttgcagcaaccacatatcgaagctcacatcttggatagctagtcaaatttatggtaaggatgatggcaatggaatgcatgaagattatctctttcccttcaccacaagggacaactccaaccgagaaatgcatatgttttcagttggtaattcggtatcagatgttgaaagttatggttctcggaggtgtgtgccaagcagaagttgtgttcacagtcctgttcacagttctgtgggtgtagggcaatggtcttgttgctgtagtctttggggagatagaggaaagtttaaaggactaaaactcaaatcatctgggacaaaacatgccaagcctaatattcctttgccacgtttgccaaacagtagccgttcaaatcgaagccgggatagttcaaagaagatcagggataagtctccggcgtcagtcactagtcgtcgttctgcaaaagtaggagttgatcccttgtttcatgtaggatacagtgaattgaagttcttttctgatactgactcagagtttctgttttctgatggggatgatggtagcggtttaaccagtgtaaatcatgagcctaagatggaaggtttagtgcgtgcttcacgatatcggcctaaagcaccaccaaatggtttgaggtcaggaaggcctagcaagcgtccccccaaacccaagcggtcactttcagaaccatggcctgtttttaggaaagcctatgttgtaaaatccttgggttcttataacgaatttgagactggcctcagtgagcttaactgtcaacaatccaataggaagtcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

345

Amino Acids

38.62

Weight (kDa)

9.46

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30690 AT2G30690
fragaria_vesca	FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220 FvH4_2g22220
malus_domestica	MD05G1203200.v1.1 MD10G1190500.v1.1
prunus_persica	Prupe.8G128800_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1 Prupe.8G229600_v2.0.a1
pyrus_communis	pycom05g18980 pycom10g16410
rosa_chinensis	RchiOBHm_Chr6g0289141
rosa_laevigata	RLG00000012328
rosa_multiflora	Rmu_co8268971.1_g000001 Rmu_sc0000666.1_g000028 Rmu_sc0001527.1_g000001 Rmu_sc0040302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179540
rosa_rugosa	Rorug06G0201000 Rorug06G0201000 Rorug06G0201100
rosa_samantha	Rh6AG312300 Rh6BG319200 Rh6CG325600 Rh6DG311500
rosa_wichuraiana	Rw6G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	978
AccB7I	CCANNNNNTGG	1 cut(s)	866
AciI	CCGC	3 cut(s)	146, 786, 913
AclWI	GGATC	2 cut(s)	240, 692
AcsI	RAATTY	2 cut(s)	285, 983
AcyI	GRCGYC	1 cut(s)	659
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	866
AgsI	TTSAA	5 cut(s)	194, 407, 612, 633, 730
AhlI	ACTAGT	1 cut(s)	668
AluBI	AGCT	3 cut(s)	262, 278, 1006
AluI	AGCT	3 cut(s)	262, 278, 1006
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	657, 983
AlwI	GGATC	2 cut(s)	240, 692
AoxI	GGCC	4 cut(s)	848, 884, 932, 994
ApeKI	GCWGC	3 cut(s)	5, 74, 243
ApoI	RAATTY	2 cut(s)	285, 983
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	17, 86, 255
BccI	CCATC	4 cut(s)	296, 764, 773, 811
BceAI	ACGGC	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	710
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	657, 983
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	3 cut(s)	279, 669, 888
BfmI	CTRYAG	2 cut(s)	72, 499
BfuI	GTATCC	1 cut(s)	710
BisI	GCNGC	3 cut(s)	6, 75, 244
BlsI	GCNGC	3 cut(s)	7, 76, 245
Bme1390I	CCNGG	1 cut(s)	623
BmrFI	CCNGG	1 cut(s)	623
BmsI	GCATC	2 cut(s)	103, 183
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	623
BsaHI	GRCGYC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	929, 966
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	3 cut(s)	208, 795, 997
Bse3DI	GCAATG	2 cut(s)	313, 491
BseDI	CCNNGG	2 cut(s)	929, 966
BseGI	GGATG	2 cut(s)	304, 781
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMI	GCAATG	2 cut(s)	313, 491
BseMII	CTCAG	2 cut(s)	765, 1012
BseNI	ACTGG	3 cut(s)	208, 795, 997
BseXI	GCAGC	3 cut(s)	17, 86, 255
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	850, 886, 934, 996
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	622, 656
BslFI	GGGAC	3 cut(s)	362, 568, 882
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	2 cut(s)	657, 983
BsmFI	GGGAC	3 cut(s)	362, 568, 882
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	4 cut(s)	850, 886, 934, 996
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	232, 639, 697
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	3 cut(s)	146, 786, 913
BspANI	GGCC	4 cut(s)	850, 886, 934, 996
BspCNI	CTCAG	2 cut(s)	764, 1011
BspHI	TCATGA	1 cut(s)	805
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	2 cut(s)	240, 692
BsrDI	GCAATG	2 cut(s)	313, 491
BsrI	ACTGG	3 cut(s)	208, 795, 997
BssECI	CCNNGG	2 cut(s)	929, 966
BssMI	GATC	3 cut(s)	232, 639, 697
BssNI	GRCGYC	1 cut(s)	659
BssT1I	CCWWGG	2 cut(s)	929, 966
Bst4CI	ACNGT	6 cut(s)	120, 455, 467, 602, 722, 1013
BstACI	GRCGYC	1 cut(s)	659
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	834, 893
BstDEI	CTNAG	4 cut(s)	138, 751, 813, 998
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	2 cut(s)	304, 781
BstKTI	GATC	3 cut(s)	235, 642, 700
BstMAI	GTCTC	2 cut(s)	657, 983
BstMBI	GATC	3 cut(s)	232, 639, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 592, 892
BstNSI	RCATGY	2 cut(s)	81, 566
BstSCI	CCNGG	1 cut(s)	621
BstSFI	CTRYAG	2 cut(s)	72, 499
BstV1I	GCAGC	3 cut(s)	17, 86, 255
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	710
BsuRI	GGCC	4 cut(s)	850, 886, 934, 996
BtgI	CCRYGG	1 cut(s)	929
BtsCI	GGATG	2 cut(s)	304, 781
BtsIMutI	CAGTG	4 cut(s)	116, 727, 802, 1006
Cac8I	GCNNGC	2 cut(s)	834, 893
CciI	TCATGA	1 cut(s)	805
CseI	GACGC	2 cut(s)	648, 884
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	6 cut(s)	78, 317, 563, 710, 806, 930
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	4 cut(s)	138, 751, 813, 998
DpnI	GATC	3 cut(s)	234, 641, 699
DpnII	GATC	3 cut(s)	232, 639, 697
DraI	TTTAAA	1 cut(s)	529
Eco130I	CCWWGG	2 cut(s)	929, 966
Eco147I	AGGCCT	1 cut(s)	886
Eco32I	GATATC	1 cut(s)	845
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	929, 966
EcoT22I	ATGCAT	2 cut(s)	318, 372
ErhI	CCWWGG	2 cut(s)	929, 966
FaeI	CATG	6 cut(s)	81, 320, 566, 713, 809, 933
FaqI	GGGAC	3 cut(s)	362, 568, 882
FatI	CATG	6 cut(s)	77, 316, 562, 709, 805, 929
FauNDI	CATATG	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	6, 75, 244
FokI	GGATG	2 cut(s)	311, 788
Fsp4HI	GCNGC	3 cut(s)	6, 75, 244
FspBI	CTAG	3 cut(s)	279, 669, 888
GluI	GCNGC	3 cut(s)	6, 75, 244
HaeIII	GGCC	4 cut(s)	850, 886, 934, 996
HapII	CCGG	2 cut(s)	622, 656
HgaI	GACGC	2 cut(s)	648, 884
Hin1I	GRCGYC	1 cut(s)	659
Hin1II	CATG	6 cut(s)	81, 320, 566, 713, 809, 933
HincII	GTYRAC	1 cut(s)	1016
HindII	GTYRAC	1 cut(s)	1016
HinfI	GANTC	1 cut(s)	749
HpaII	CCGG	2 cut(s)	622, 656
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	451, 463, 1016
Hpy188I	TCNGA	6 cut(s)	400, 423, 742, 754, 769, 925
Hpy188III	TCNNGA	3 cut(s)	806, 840, 879
Hpy8I	GTNNAC	3 cut(s)	451, 463, 1016
Hpy99I	CGWCG	1 cut(s)	678
HpyAV	CCTTC	3 cut(s)	346, 815, 876
HpyCH4III	ACNGT	6 cut(s)	120, 455, 467, 602, 722, 1013
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	9 cut(s)	34, 74, 116, 163, 174, 243, 316, 370, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 592, 892
HpyF3I	CTNAG	4 cut(s)	138, 751, 813, 998
HpySE526I	ACGT	1 cut(s)	589
Hsp92I	GRCGYC	1 cut(s)	659
Hsp92II	CATG	6 cut(s)	81, 320, 566, 713, 809, 933
Kzo9I	GATC	3 cut(s)	232, 639, 697
Lsp1109I	GCAGC	3 cut(s)	17, 86, 255
LweI	GCATC	2 cut(s)	103, 183
MaeI	CTAG	3 cut(s)	279, 669, 888
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	2 cut(s)	664, 915
MalI	GATC	3 cut(s)	234, 641, 699
MboI	GATC	3 cut(s)	232, 639, 697
MboII	GAAGA	3 cut(s)	92, 332, 649
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	285, 388, 725, 983
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	30, 42, 223, 417, 512, 867, 1007
Mph1103I	ATGCAT	2 cut(s)	318, 372
MseI	TTAA	3 cut(s)	528, 791, 1008
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	2 cut(s)	622, 656
MspR9I	CCNGG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	180, 592, 892
NciI	CCSGG	1 cut(s)	623
NcoI	CCATGG	1 cut(s)	929
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	232, 639, 697
NlaIII	CATG	6 cut(s)	81, 320, 566, 713, 809, 933
NmuCI	GTSAC	2 cut(s)	664, 915
NsiI	ATGCAT	2 cut(s)	318, 372
NspI	RCATGY	2 cut(s)	81, 566
PagI	TCATGA	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	886
PctI	GAATGC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	3 cut(s)	7, 76, 245
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PsiI	TTATAA	1 cut(s)	978
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	528, 791, 1008
SatI	GCNGC	3 cut(s)	6, 75, 244
Sau3AI	GATC	3 cut(s)	232, 639, 697
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	9 cut(s)	53, 191, 264, 280, 428, 592, 826, 878, 1008
SfaNI	GCATC	2 cut(s)	103, 183
SfcI	CTRYAG	2 cut(s)	72, 499
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	4 cut(s)	285, 388, 725, 983
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	3 cut(s)	146, 786, 913
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	3 cut(s)	279, 669, 888
StuI	AGGCCT	1 cut(s)	886
StyD4I	CCNGG	1 cut(s)	621
StyI	CCWWGG	2 cut(s)	929, 966
TaaI	ACNGT	6 cut(s)	120, 455, 467, 602, 722, 1013
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	257, 616
TasI	AATT	4 cut(s)	285, 388, 725, 983
TatI	WGTACW	1 cut(s)	25
Tru1I	TTAA	3 cut(s)	528, 791, 1008
Tru9I	TTAA	3 cut(s)	528, 791, 1008
TscAI	CASTG	4 cut(s)	123, 727, 802, 1006
TseFI	GTSAC	2 cut(s)	664, 915
TseI	GCWGC	3 cut(s)	5, 74, 243
Tsp45I	GTSAC	2 cut(s)	664, 915
TspDTI	ATGAA	3 cut(s)	225, 333, 698
TspRI	CASTG	4 cut(s)	123, 727, 802, 1006
Van91I	CCANNNNNTGG	1 cut(s)	866
XapI	RAATTY	2 cut(s)	285, 983
XceI	RCATGY	2 cut(s)	81, 566
XspI	CTAG	3 cut(s)	279, 669, 888
Zsp2I	ATGCAT	2 cut(s)	318, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.