Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009659

Physical Location & Seq

Genomic Coordinates Forward (+)

17555450 .. 17557318

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G171700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTCTTGTGTTCTAATATATGTTCAAGATCCAATGAGCTTGAGGTTGGGGCATTTGAGATGACTTACCTCGTGCCGGATCATCCTCCATGTGTACTAGAGACCGACTTAGATGTGCGTGTAATGTATCTGTCCTTGATGAATGAGAAGAAATATACAGTTACAATTGCTATTAAGGAGTTTTTATTTCCTGAGAAGCAAAACGGTGTTGATGATATGTTTTGTGGTGATGGTAATACGCATAATTGGGAAATATGCAGCACCTTCTGGTCATACATACTTGTCTCATTCTTGGAAGAACTACATCAATTATGTGGGTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

109

Amino Acids

12.47

Weight (kDa)

4.43

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009659)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35253 FvH4_3g24442
prunus_persica	Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1
pyrus_communis	pycom14g07550
rosa_laevigata	RLG00000007937 RLG00000008445
rosa_roxburghii	Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610
rosa_rugosa	Rorug05G0209100
rosa_samantha	Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	24, 87
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	95, 289
AlwI	GGATC	2 cut(s)	24, 87
ApeKI	GCWGC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	239
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	95, 289
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	95, 289
Bso31I	GGTCTC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	29, 79
BspCNI	CTCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	24, 87
BspTNI	GGTCTC	1 cut(s)	95
BssMI	GATC	2 cut(s)	29, 79
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	160, 206
BstDEI	CTNAG	2 cut(s)	109, 192
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	32, 82
BstMAI	GTCTC	2 cut(s)	95, 289
BstMBI	GATC	2 cut(s)	29, 79
BstV1I	GCAGC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	1 cut(s)	40
CviKI_1	RGCY	1 cut(s)	40
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	109, 192
DpnI	GATC	2 cut(s)	31, 81
DpnII	GATC	2 cut(s)	29, 79
Eco31I	GGTCTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	93
FatI	CATG	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	259
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	259
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	259
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	93
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	27, 191
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	160, 206
HpyCH4V	TGCA	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	109, 192
Hsp92II	CATG	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	29, 79
LpnPI	CCDG	3 cut(s)	90, 204, 253
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	31, 81
MboI	GATC	2 cut(s)	29, 79
MboII	GAAGA	2 cut(s)	160, 308
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	3 cut(s)	165, 244, 308
MnlI	CCTC	3 cut(s)	37, 80, 96
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	165
NdeII	GATC	2 cut(s)	29, 79
NlaIII	CATG	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	2 cut(s)	29, 79
SetI	ASST	4 cut(s)	42, 48, 72, 266
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	165, 244, 308
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	160, 206
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	165, 244, 308
TatI	WGTACW	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	155
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.