Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009659

Physical Location & Seq

Genomic Coordinates Reverse (-)

33617137 .. 33618646

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGGAGGTTGAAAAGCCGAGCATACCGAGTGCCTTAGGAGCCGGATCAAGAGAGAACGATATCTGCTTCAACCACCGCGTCATTGAAGCCGCCGGATCACATCGGAGCTCGATTCGGGAAGGTCGAGTGCATTGTGCGTCGAATGTAATCGAAGCCGCTGTTCATCATGGAGAATTTGAATCCGAATTTGAATCCAAACACAAGCTCGAGACTGTCATGCTCATCATTGATGGTACGACAAGGTTCGCCGATTTTTTCAATGAAATTTGCATGCGGTTTAAGGGTTTGAAGCCAGGCTTGTTTGAGTTGAAGTATACCCTACCGGATTACCCTTCTTGTGCTCTCGATTCTGATTTAGATATGAGGTTGATGTTTAGGACTTTAGCTGAGTTTAAGAGGACTTCGGTTGACATTTTGGTGAGGATTTGTAATTTTGGTACTAATTGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

6.07

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009659)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35253 FvH4_3g24442
prunus_persica	Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1
pyrus_communis	pycom14g07550
rosa_laevigata	RLG00000007937 RLG00000008445
rosa_roxburghii	Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610
rosa_rugosa	Rorug05G0209100
rosa_samantha	Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AccII	CGCG	1 cut(s)	81
AciI	CCGC	4 cut(s)	79, 93, 159, 277
AclWI	GGATC	2 cut(s)	55, 106
AcsI	RAATTY	3 cut(s)	176, 188, 267
AfaI	GTAC	2 cut(s)	238, 442
AgsI	TTSAA	8 cut(s)	14, 73, 89, 182, 194, 262, 292, 313
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	111, 208, 389
AluI	AGCT	3 cut(s)	111, 208, 389
Alw21I	GWGCWC	2 cut(s)	113, 346
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	55, 106
Ama87I	CYCGRG	1 cut(s)	209
ApoI	RAATTY	3 cut(s)	176, 188, 267
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	113, 346
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	93, 159
BlsI	GCNGC	2 cut(s)	94, 160
Bme1390I	CCNGG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	325
Bse21I	CCTNAGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	113, 346
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	45, 96, 326
BsmAI	GTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	113, 346
Bsp143I	GATC	2 cut(s)	47, 98
BspACI	CCGC	4 cut(s)	79, 93, 159, 277
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	55, 106
BssMI	GATC	2 cut(s)	47, 98
BssNAI	GTATAC	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	37, 390
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	50, 101
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	47, 98
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	275
CseI	GACGC	2 cut(s)	70, 129
Csp6I	GTAC	2 cut(s)	237, 441
CviAII	CATG	3 cut(s)	170, 220, 274
CviJI	RGCY	9 cut(s)	19, 44, 92, 111, 158, 208, 295, 300, 389
CviKI_1	RGCY	9 cut(s)	19, 44, 92, 111, 158, 208, 295, 300, 389
CviQI	GTAC	2 cut(s)	237, 441
DdeI	CTNAG	2 cut(s)	37, 390
DpnI	GATC	2 cut(s)	49, 100
DpnII	GATC	2 cut(s)	47, 98
Ecl136II	GAGCTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	3 cut(s)	173, 223, 277
FaiI	YATR	6 cut(s)	26, 171, 221, 275, 318, 365
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	169, 219, 273
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	93, 159
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	93, 159
GluI	GCNGC	2 cut(s)	93, 159
HapII	CCGG	3 cut(s)	45, 96, 326
HgaI	GACGC	2 cut(s)	70, 129
Hin1II	CATG	3 cut(s)	173, 223, 277
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	4 cut(s)	115, 182, 194, 350
HpaII	CCGG	3 cut(s)	45, 96, 326
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	318, 412
Hpy188I	TCNGA	3 cut(s)	108, 187, 355
Hpy188III	TCNNGA	4 cut(s)	51, 119, 211, 347
Hpy8I	GTNNAC	2 cut(s)	318, 412
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	116, 345
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	133, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	37, 390
Hsp92II	CATG	3 cut(s)	173, 223, 277
Kzo9I	GATC	2 cut(s)	47, 98
LmnI	GCTCC	2 cut(s)	41, 108
LpnPI	CCDG	5 cut(s)	58, 109, 282, 309, 339
MalI	GATC	2 cut(s)	49, 100
MboI	GATC	2 cut(s)	47, 98
MhlI	GDGCHC	2 cut(s)	113, 346
MluCI	AATT	5 cut(s)	176, 188, 267, 433, 445
MnlI	CCTC	3 cut(s)	360, 393, 417
MseI	TTAA	2 cut(s)	282, 396
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	45, 96, 326
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	2 cut(s)	47, 98
NlaIII	CATG	3 cut(s)	173, 223, 277
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	45
NspI	RCATGY	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	4 cut(s)	115, 182, 194, 350
PkrI	GCNGC	2 cut(s)	94, 160
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	2 cut(s)	238, 442
RsaNI	GTAC	2 cut(s)	237, 441
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	282, 396
SatI	GCNGC	2 cut(s)	93, 159
Sau3AI	GATC	2 cut(s)	47, 98
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	2 cut(s)	113, 346
SetI	ASST	7 cut(s)	12, 113, 127, 210, 248, 371, 391
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	5 cut(s)	176, 188, 267, 433, 445
SsiI	CCGC	4 cut(s)	79, 93, 159, 277
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	6 cut(s)	113, 127, 143, 153, 210, 348
TasI	AATT	5 cut(s)	176, 188, 267, 433, 445
TauI	GCSGC	2 cut(s)	95, 161
TfiI	GAWTC	4 cut(s)	115, 182, 194, 350
Tru1I	TTAA	2 cut(s)	282, 396
Tru9I	TTAA	2 cut(s)	282, 396
TspDTI	ATGAA	3 cut(s)	17, 155, 279
XapI	RAATTY	3 cut(s)	176, 188, 267
XceI	RCATGY	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.