Rh5DG360400

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009659
Physical Location & Seq
Reverse (-)
53799995 .. 53801816
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG360400.1

Sequence Viewer

Length: 357 bp
ATGGAAGCTGCGATTATTGCCAGATGTCGTTTGGACTCAAAAACTGTGGCAGTGCCAATTTTTAACTTATCTACGTATGAATACATATGTAGTCAAATTTCTTCGCGGTTTAGCGAGCTAGATGTATGTTCTTTTGAGTTAACATACTCAATTGGAAACCACCCATCATGTATTCTGCAATCTGACATGGATGTCCAGGTTTTACTGTTTTCTCTATCGAATGAAAGAAAAAGTTTTGTTGATATCGACATAAATGTCATTGGAACTGTCGATGCTGAGAGTGAAGAGGATGATATTGAGGAAACAAATATGGAGAAATGTGCTCAAACTTGGCGGAGTCTTTCAACGCATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

4.28

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 191, 254
AccII CGCG 1 cut(s) 106
AciI CCGC 2 cut(s) 106, 334
AcsI RAATTY 1 cut(s) 96
AgsI TTSAA 1 cut(s) 345
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 8, 118
AluI AGCT 2 cut(s) 8, 118
Alw21I GWGCWC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 325
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 197
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 75
BseBI CCWGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 196, 295
BseMII CTCAG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 325
BspACI CCGC 2 cut(s) 106, 334
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 46, 207, 268
Bst6I CTCTTC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 196, 295
BstFNI CGCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstSNI TACGTA 1 cut(s) 75
BstUI CGCG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 196, 295
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 3 cut(s) 168, 187, 350
CviJI RGCY 2 cut(s) 8, 118
CviKI_1 RGCY 2 cut(s) 8, 118
DdeI CTNAG 1 cut(s) 276
DrdI GACNNNNNNGTC 2 cut(s) 191, 254
DseDI GACNNNNNNGTC 2 cut(s) 191, 254
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 1 cut(s) 349
Eco105I TACGTA 1 cut(s) 75
Eco32I GATATC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 195
EcoRV GATATC 1 cut(s) 244
FaeI CATG 3 cut(s) 171, 190, 353
FatI CATG 3 cut(s) 167, 186, 349
FauNDI CATATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 203, 302
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 9
Hin1II CATG 3 cut(s) 171, 190, 353
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 2 cut(s) 35, 337
HpaI GTTAAC 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4III ACNGT 3 cut(s) 46, 207, 268
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 3 cut(s) 171, 190, 353
KspAI GTTAAC 1 cut(s) 141
LpnPI CCDG 3 cut(s) 34, 182, 209
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 74
MboII GAAGA 2 cut(s) 93, 296
MfeI CAATTG 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 3 cut(s) 57, 96, 150
MlyI GAGTC 2 cut(s) 29, 346
MnlI CCTC 2 cut(s) 280, 292
MseI TTAA 2 cut(s) 63, 140
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeI CATATG 1 cut(s) 86
NlaIII CATG 3 cut(s) 171, 190, 353
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 29, 345
PpsI GAGTC 2 cut(s) 29, 345
Ppu21I YACGTR 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 63, 140
SatI GCNGC 1 cut(s) 9
SchI GAGTC 2 cut(s) 29, 346
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 325
SetI ASST 4 cut(s) 10, 77, 120, 201
SfaNI GCATC 1 cut(s) 262
SgeI CNNG 9 cut(s) 33, 117, 127, 131, 180, 199, 208, 209, 342
SnaBI TACGTA 1 cut(s) 75
Sse9I AATT 3 cut(s) 57, 96, 150
SsiI CCGC 2 cut(s) 106, 334
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 46, 207, 268
TaiI ACGT 1 cut(s) 77
TaqI TCGA 3 cut(s) 218, 246, 270
TasI AATT 3 cut(s) 57, 96, 150
Tru1I TTAA 2 cut(s) 63, 140
Tru9I TTAA 2 cut(s) 63, 140
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 93, 237
TspRI CASTG 1 cut(s) 57
XapI RAATTY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.