Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009659

Physical Location & Seq

Genomic Coordinates Reverse (-)

40614209 .. 40619397

Gene Structure 5189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAACCCAAACTCGAATCAGGACGACTGGATAGTGCTACACTAGCAAAGTGCACTTATCGCTCAGTAGCATTCCTAACTGCATTGTATGAAAATAGTAAGTATGCGGACATTTGTGATGAGATTTGTTCAAGGTTTAAGGTACTGGACATAGGGAGCTTTGAGCTGACATATGCTATCCCTGATCACCCTAATTGTTTGCTGCAATCGGATATGGATGTGCGCATGATGTTGATGTGTCTAGAAATGTTGAATATTAGGATTGTTGATATATTAGTGAAGGATCGTGTGAATTCCAATATTGAAGGCGCTGGTCAAAATCATGTAGAGTCTGCAGGATATTTTCCTTTTGCGTTTGCGATCATGGACTTGGAAAGCGATGAAAACTGGAGCTGGTTCTTTGATAATTTAGCAAAAGTTTTGACTCCGGAAGGCAGGACAATTACATTTGTATCTGATCGTAACAAAGGTTTGATTGAAGATGTTTGTAATGAGATAAATTCAAGGTTTATGGTACTGGAAGTAGGGGGTTTTAAGCTGACATTTTCTCTTCCTGATGAGCATTCTAGTTGCATGTTGGAATCTGATATGGACGTGCACATGATGCTCAGGTTATTATCCATGTTGAAGAGTCGTTTTGTTGATATATTGGTAAAGGATCTTGGGAGTTCACGTAAGGAGGATGTTGCTCATGCAGCTTCTGATAGTTCATCGTCTAATTGTGCAGCTTTTAATAATGCAGCATCTGATCTTGCCGTGCCTAATCATGAAATGTCTAATATTGATGCAGCATCTAACCATGAAACTTCTGATCATGCAGCCTCTGATCCTGCACTGCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

281

Amino Acids

31.26

Weight (kDa)

4.61

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009659)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35253 FvH4_3g24442
prunus_persica	Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1
pyrus_communis	pycom14g07550
rosa_laevigata	RLG00000007937 RLG00000008445
rosa_roxburghii	Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610
rosa_rugosa	Rorug05G0209100
rosa_samantha	Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	291, 666, 821
AcsI	RAATTY	2 cut(s)	292, 499
AfaI	GTAC	2 cut(s)	144, 516
AgsI	TTSAA	6 cut(s)	132, 253, 305, 479, 504, 628
AjiI	CACGTC	1 cut(s)	595
AluBI	AGCT	6 cut(s)	159, 166, 393, 538, 698, 728
AluI	AGCT	6 cut(s)	159, 166, 393, 538, 698, 728
Alw21I	GWGCWC	2 cut(s)	56, 600
Alw44I	GTGCAC	2 cut(s)	52, 596
AlwI	GGATC	3 cut(s)	291, 666, 821
AlwNI	CAGNNNCTG	3 cut(s)	701, 746, 824
Aor13HI	TCCGGA	1 cut(s)	427
ApaLI	GTGCAC	2 cut(s)	52, 596
ApeKI	GCWGC	6 cut(s)	202, 695, 725, 740, 788, 818
ApoI	RAATTY	2 cut(s)	292, 499
AspLEI	GCGC	2 cut(s)	225, 311
AsuHPI	GGTGA	1 cut(s)	179
BaeGI	GKGCMC	2 cut(s)	56, 600
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
Bbv12I	GWGCWC	2 cut(s)	56, 600
BbvI	GCAGC	6 cut(s)	189, 707, 737, 752, 800, 830
BceAI	ACGGC	1 cut(s)	740
BclI	TGATCA	2 cut(s)	184, 811
BfaI	CTAG	3 cut(s)	44, 242, 567
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	312
BisI	GCNGC	6 cut(s)	203, 696, 726, 741, 789, 819
BlsI	GCNGC	6 cut(s)	204, 697, 727, 742, 790, 820
BmgBI	CACGTC	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	594, 752, 775, 800
BpmI	CTGGAG	1 cut(s)	409
Bpu10I	CCTNAGC	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bse1I	ACTGG	4 cut(s)	33, 150, 392, 522
BseAI	TCCGGA	1 cut(s)	427
BseGI	GGATG	2 cut(s)	223, 688
BseMII	CTCAG	2 cut(s)	78, 622
BseNI	ACTGG	4 cut(s)	33, 150, 392, 522
BseSI	GKGCMC	2 cut(s)	56, 600
BseXI	GCAGC	6 cut(s)	189, 707, 737, 752, 800, 830
BsgI	GTGCAG	2 cut(s)	744, 816
BsiHKAI	GWGCWC	2 cut(s)	56, 600
BsiSI	CCGG	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	71, 562
Bsp1286I	GDGCHC	2 cut(s)	56, 600
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	77, 621
BspEI	TCCGGA	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	3 cut(s)	291, 666, 821
BsrI	ACTGG	4 cut(s)	33, 150, 392, 522
BssMI	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
Bst6I	CTCTTC	2 cut(s)	555, 623
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstBAI	YACGTR	1 cut(s)	674
BstDEI	CTNAG	2 cut(s)	64, 608
BstF5I	GGATG	2 cut(s)	223, 688
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	225, 311
BstKTI	GATC	8 cut(s)	187, 286, 363, 460, 661, 751, 814, 829
BstMBI	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 60, 604, 695
BstNSI	RCATGY	1 cut(s)	577
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	2 cut(s)	56, 600
BstV1I	GCAGC	6 cut(s)	189, 707, 737, 752, 800, 830
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	223, 688
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	1 cut(s)	833
CaiI	CAGNNNCTG	3 cut(s)	701, 746, 824
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	2 cut(s)	225, 311
Csp6I	GTAC	2 cut(s)	143, 515
CviJI	RGCY	7 cut(s)	159, 166, 393, 538, 698, 728, 821
CviKI_1	RGCY	7 cut(s)	159, 166, 393, 538, 698, 728, 821
CviQI	GTAC	2 cut(s)	143, 515
DdeI	CTNAG	2 cut(s)	64, 608
DpnI	GATC	8 cut(s)	186, 285, 362, 459, 660, 750, 813, 828
DpnII	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
Eam1104I	CTCTTC	2 cut(s)	555, 623
EarI	CTCTTC	2 cut(s)	555, 623
EcoRI	GAATTC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	184, 811
Fnu4HI	GCNGC	6 cut(s)	203, 696, 726, 741, 789, 819
FokI	GGATG	2 cut(s)	230, 695
Fsp4HI	GCNGC	6 cut(s)	203, 696, 726, 741, 789, 819
FspAI	RTGCGCAY	1 cut(s)	224
FspBI	CTAG	3 cut(s)	44, 242, 567
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	2 cut(s)	224, 310
GluI	GCNGC	6 cut(s)	203, 696, 726, 741, 789, 819
GsuI	CTGGAG	1 cut(s)	409
HaeII	RGCGCY	1 cut(s)	312
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	2 cut(s)	225, 311
Hin6I	GCGC	2 cut(s)	223, 309
HinP1I	GCGC	2 cut(s)	223, 309
HinfI	GANTC	5 cut(s)	17, 329, 424, 581, 631
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	54, 598, 671
Hpy188I	TCNGA	7 cut(s)	211, 457, 586, 703, 748, 811, 826
Hpy188III	TCNNGA	5 cut(s)	21, 242, 428, 554, 767
Hpy8I	GTNNAC	3 cut(s)	54, 598, 671
HpyAV	CCTTC	3 cut(s)	274, 299, 425
HpyCH4IV	ACGT	2 cut(s)	594, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 60, 604, 695
HpyF3I	CTNAG	2 cut(s)	64, 608
HpySE526I	ACGT	2 cut(s)	594, 673
HspAI	GCGC	2 cut(s)	223, 309
Kpn2I	TCCGGA	1 cut(s)	427
Ksp22I	TGATCA	2 cut(s)	184, 811
Kzo9I	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
LmnI	GCTCC	2 cut(s)	156, 390
Lsp1109I	GCAGC	6 cut(s)	189, 707, 737, 752, 800, 830
LweI	GCATC	4 cut(s)	594, 752, 775, 800
MaeI	CTAG	3 cut(s)	44, 242, 567
MaeII	ACGT	2 cut(s)	594, 673
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	8 cut(s)	186, 285, 362, 459, 660, 750, 813, 828
MboI	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
MboII	GAAGA	3 cut(s)	491, 542, 640
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	2 cut(s)	56, 600
MluCI	AATT	7 cut(s)	193, 292, 406, 441, 499, 718, 841
MlyI	GAGTC	3 cut(s)	338, 418, 640
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	2 cut(s)	673, 832
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	4 cut(s)	138, 534, 732, 844
MspI	CCGG	1 cut(s)	428
Mva1269I	GAATGC	2 cut(s)	71, 562
MwoI	GCNNNNNNNGC	4 cut(s)	44, 60, 604, 695
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
NlaIV	GGNNCC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	224
NspI	RCATGY	1 cut(s)	577
PagI	TCATGA	1 cut(s)	766
PctI	GAATGC	2 cut(s)	71, 562
PfeI	GAWTC	2 cut(s)	17, 581
PkrI	GCNGC	6 cut(s)	204, 697, 727, 742, 790, 820
PleI	GAGTC	3 cut(s)	337, 418, 639
PpsI	GAGTC	3 cut(s)	337, 418, 639
Ppu21I	YACGTR	1 cut(s)	674
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	3 cut(s)	701, 746, 824
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	144, 516
RsaNI	GTAC	2 cut(s)	143, 515
SaqAI	TTAA	4 cut(s)	138, 534, 732, 844
SatI	GCNGC	6 cut(s)	203, 696, 726, 741, 789, 819
Sau3AI	GATC	8 cut(s)	184, 283, 360, 457, 658, 748, 811, 826
SchI	GAGTC	3 cut(s)	338, 418, 640
SduI	GDGCHC	2 cut(s)	56, 600
SfaNI	GCATC	4 cut(s)	594, 752, 775, 800
SfcI	CTRYAG	1 cut(s)	333
Sse9I	AATT	7 cut(s)	193, 292, 406, 441, 499, 718, 841
SsiI	CCGC	1 cut(s)	107
SspI	AATATT	3 cut(s)	256, 301, 781
SspMI	CTAG	3 cut(s)	44, 242, 567
TaiI	ACGT	2 cut(s)	597, 676
TaqI	TCGA	1 cut(s)	15
TasI	AATT	7 cut(s)	193, 292, 406, 441, 499, 718, 841
TfiI	GAWTC	2 cut(s)	17, 581
Tru1I	TTAA	4 cut(s)	138, 534, 732, 844
Tru9I	TTAA	4 cut(s)	138, 534, 732, 844
TscAI	CASTG	1 cut(s)	840
TseI	GCWGC	6 cut(s)	202, 695, 725, 740, 788, 818
TspDTI	ATGAA	5 cut(s)	105, 396, 699, 783, 816
TspRI	CASTG	1 cut(s)	840
VneI	GTGCAC	2 cut(s)	52, 596
XapI	RAATTY	2 cut(s)	292, 499
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	3 cut(s)	44, 242, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.