plant mutator transposase zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g35253 FvH4_3g24442 |
| prunus_persica | Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1 |
| pyrus_communis | pycom14g07550 |
| rosa_laevigata | RLG00000007937 RLG00000008445 |
| rosa_roxburghii | Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610 |
| rosa_rugosa | Rorug05G0209100 |
| rosa_samantha | Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 106 |
| AciI | CCGC | 1 cut(s) | 58 |
| AcsI | RAATTY | 1 cut(s) | 48 |
| AfaI | GTAC | 2 cut(s) | 19, 178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 186 |
| AgsI | TTSAA | 3 cut(s) | 43, 73, 94 |
| Alw21I | GWGCWC | 1 cut(s) | 127 |
| Aor13HI | TCCGGA | 1 cut(s) | 106 |
| ApoI | RAATTY | 1 cut(s) | 48 |
| Bbv12I | GWGCWC | 1 cut(s) | 127 |
| BccI | CCATC | 1 cut(s) | 8 |
| BceAI | ACGGC | 1 cut(s) | 61 |
| BsaWI | WCCGGW | 1 cut(s) | 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 186 |
| BseAI | TCCGGA | 1 cut(s) | 106 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 186 |
| BsiHKAI | GWGCWC | 1 cut(s) | 127 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 186 |
| Bsp1286I | GDGCHC | 1 cut(s) | 127 |
| Bsp13I | TCCGGA | 1 cut(s) | 106 |
| Bsp143I | GATC | 1 cut(s) | 172 |
| BspACI | CCGC | 1 cut(s) | 58 |
| BspEI | TCCGGA | 1 cut(s) | 106 |
| BssMI | GATC | 1 cut(s) | 172 |
| BstC8I | GCNNGC | 1 cut(s) | 56 |
| BstKTI | GATC | 1 cut(s) | 175 |
| BstMBI | GATC | 1 cut(s) | 172 |
| BstNSI | RCATGY | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 1 cut(s) | 56 |
| Csp6I | GTAC | 2 cut(s) | 18, 177 |
| CviAII | CATG | 1 cut(s) | 55 |
| CviJI | RGCY | 1 cut(s) | 76 |
| CviKI_1 | RGCY | 1 cut(s) | 76 |
| CviQI | GTAC | 2 cut(s) | 18, 177 |
| DpnI | GATC | 1 cut(s) | 174 |
| DpnII | GATC | 1 cut(s) | 172 |
| FaeI | CATG | 1 cut(s) | 58 |
| FaiI | YATR | 2 cut(s) | 56, 164 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 65, 97 |
| FatI | CATG | 1 cut(s) | 54 |
| HapII | CCGG | 1 cut(s) | 107 |
| Hin1II | CATG | 1 cut(s) | 58 |
| HinfI | GANTC | 1 cut(s) | 131 |
| HpaII | CCGG | 1 cut(s) | 107 |
| Hpy188I | TCNGA | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 2 cut(s) | 107, 128 |
| HpyAV | CCTTC | 2 cut(s) | 113, 126 |
| HpyCH4V | TGCA | 1 cut(s) | 54 |
| Hsp92II | CATG | 1 cut(s) | 58 |
| Kpn2I | TCCGGA | 1 cut(s) | 106 |
| Kzo9I | GATC | 1 cut(s) | 172 |
| LpnPI | CCDG | 2 cut(s) | 120, 142 |
| MalI | GATC | 1 cut(s) | 174 |
| MboI | GATC | 1 cut(s) | 172 |
| MhlI | GDGCHC | 1 cut(s) | 127 |
| MluCI | AATT | 1 cut(s) | 48 |
| MroI | TCCGGA | 1 cut(s) | 106 |
| MseI | TTAA | 1 cut(s) | 63 |
| MspI | CCGG | 1 cut(s) | 107 |
| NdeII | GATC | 1 cut(s) | 172 |
| NlaIII | CATG | 1 cut(s) | 58 |
| NspI | RCATGY | 1 cut(s) | 58 |
| PaeI | GCATGC | 1 cut(s) | 58 |
| PfeI | GAWTC | 1 cut(s) | 131 |
| RsaI | GTAC | 2 cut(s) | 19, 178 |
| RsaNI | GTAC | 2 cut(s) | 18, 177 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| Sau3AI | GATC | 1 cut(s) | 172 |
| SduI | GDGCHC | 1 cut(s) | 127 |
| SetI | ASST | 1 cut(s) | 29 |
| SgeI | CNNG | 9 cut(s) | 36, 67, 90, 94, 119, 132, 140, 159, 169 |
| SphI | GCATGC | 1 cut(s) | 58 |
| Sse9I | AATT | 1 cut(s) | 48 |
| SsiI | CCGC | 1 cut(s) | 58 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TasI | AATT | 1 cut(s) | 48 |
| TfiI | GAWTC | 1 cut(s) | 131 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TspDTI | ATGAA | 1 cut(s) | 60 |
| XapI | RAATTY | 1 cut(s) | 48 |
| XceI | RCATGY | 1 cut(s) | 58 |