Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009659

Physical Location & Seq

Genomic Coordinates Reverse (-)

38894850 .. 38899408

Gene Structure 4559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG301600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCATTACTGTATCTAGTAACAATATGTTGCATCGGTATTTTGGTATGCTATTCTGTGGTTGTTGCTGACCCGTTTTTCTCTTTGTATGTTTCTATAATTTATATATGTAGACGACTGGATAGTGCTACACTAGCAAAGTGCACTTATCGCTCAGTAGCATTCCTAACTGCATTGTATGAAAATAGTAAGTATGCGGACATTTGTGATGAGATTTGTTCAAGGTTTAAGGTACTGGACATAGGGAGCTTTGAGCTGACATATGCTATCCCTGATCACCCTAATTGTTTGCTGCAATCGGATATGGATGTGCGCATGATGTTGATGTGTCTAGAAATGTTGAATATTAGGATTGTTGATATATTAGTGAAGGATCGTGTGAATTCCAATATTGAAGGCGCTGGCCAAAATCATGTAGAGTCTGCAGGTTCTAATAATGTGCCTATTCATACAACACCTATGTCACGCACAGTAGAAACTCACAGTGCCACTGGATATTTTCCTTTTGCGTTTGCGATCATGGACTCGGAAAGCGATGAAAACTGGAGCTGGTTCTTTGATAATTTAGCAAAAGTTTTGACTCCGGAAGGCAGGACAATTACATTTGTATCTGATCGTAACAAAGGTTTGATTGAAGGTTTTTTATCCATGTTGAAGAGTCATTTTGTTGATATATTGGTAAAGGATCTTGGGAGTTCACGTAAGGAGGATGTTGCTCATGCAGCTTCTGATTGTTCATCGTCTAATTGTGCAGCTTTTAATAATGCAGCATCTGATCTTGCCGTGCCTAATCATGAAATGTCTAATGATGCAGCATCTAACCATGAAACTTCTGATCATGCAGCCTCTGATCCTGCACTGTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

289

Amino Acids

31.86

Weight (kDa)

4.81

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009659)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35253 FvH4_3g24442
prunus_persica	Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1
pyrus_communis	pycom14g07550
rosa_laevigata	RLG00000007937 RLG00000008445
rosa_roxburghii	Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610
rosa_rugosa	Rorug05G0209100
rosa_samantha	Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	583
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	381, 693, 845
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	222, 343, 395, 635, 655
AluBI	AGCT	5 cut(s)	249, 256, 549, 725, 755
AluI	AGCT	5 cut(s)	249, 256, 549, 725, 755
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	381, 693, 845
AlwNI	CAGNNNCTG	3 cut(s)	728, 773, 848
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	6 cut(s)	292, 722, 752, 767, 812, 842
ApoI	RAATTY	1 cut(s)	382
AspLEI	GCGC	2 cut(s)	315, 401
AsuHPI	GGTGA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	591, 624
BalI	TGGCCA	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	6 cut(s)	279, 734, 764, 779, 824, 854
BceAI	ACGGC	1 cut(s)	767
BclI	TGATCA	2 cut(s)	274, 835
BfaI	CTAG	3 cut(s)	17, 134, 332
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	6 cut(s)	293, 723, 753, 768, 813, 843
BlsI	GCNGC	6 cut(s)	294, 724, 754, 769, 814, 844
BmsI	GCATC	4 cut(s)	42, 779, 799, 824
BpmI	CTGGAG	1 cut(s)	565
BsaAI	YACGTR	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bse1I	ACTGG	4 cut(s)	123, 240, 496, 548
BseAI	TCCGGA	1 cut(s)	583
BseGI	GGATG	2 cut(s)	313, 715
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	4 cut(s)	123, 240, 496, 548
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	6 cut(s)	279, 734, 764, 779, 824, 854
BsgI	GTGCAG	2 cut(s)	771, 840
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	583
Bsp143I	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	167
BspEI	TCCGGA	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	381, 693, 845
BsrI	ACTGG	4 cut(s)	123, 240, 496, 548
BssMI	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
Bst4CI	ACNGT	4 cut(s)	12, 472, 485, 861
Bst6I	CTCTTC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	313, 715
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	2 cut(s)	315, 401
BstKTI	GATC	8 cut(s)	277, 376, 519, 616, 688, 778, 838, 853
BstMBI	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 150, 722
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	6 cut(s)	279, 734, 764, 779, 824, 854
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	313, 715
BtsIMutI	CAGTG	3 cut(s)	489, 490, 857
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	3 cut(s)	728, 773, 848
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	2 cut(s)	315, 401
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	8 cut(s)	316, 413, 520, 649, 719, 794, 824, 839
CviJI	RGCY	7 cut(s)	249, 256, 405, 549, 725, 755, 845
CviKI_1	RGCY	7 cut(s)	249, 256, 405, 549, 725, 755, 845
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	8 cut(s)	276, 375, 518, 615, 687, 777, 837, 852
DpnII	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	382
FaeI	CATG	8 cut(s)	319, 416, 523, 652, 722, 797, 827, 842
FatI	CATG	8 cut(s)	315, 412, 519, 648, 718, 793, 823, 838
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	2 cut(s)	274, 835
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	6 cut(s)	293, 723, 753, 768, 813, 843
FokI	GGATG	2 cut(s)	320, 722
Fsp4HI	GCNGC	6 cut(s)	293, 723, 753, 768, 813, 843
FspAI	RTGCGCAY	1 cut(s)	314
FspBI	CTAG	3 cut(s)	17, 134, 332
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	2 cut(s)	314, 400
GluI	GCNGC	6 cut(s)	293, 723, 753, 768, 813, 843
GsuI	CTGGAG	1 cut(s)	565
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	584
HhaI	GCGC	2 cut(s)	315, 401
Hin1II	CATG	8 cut(s)	319, 416, 523, 652, 722, 797, 827, 842
Hin6I	GCGC	2 cut(s)	313, 399
HinP1I	GCGC	2 cut(s)	313, 399
HinfI	GANTC	4 cut(s)	419, 524, 580, 658
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	113, 144, 698
Hpy188I	TCNGA	7 cut(s)	301, 529, 613, 730, 775, 835, 850
Hpy188III	TCNNGA	3 cut(s)	332, 584, 794
Hpy8I	GTNNAC	3 cut(s)	113, 144, 698
HpyAV	CCTTC	4 cut(s)	364, 389, 581, 629
HpyCH4III	ACNGT	4 cut(s)	12, 472, 485, 861
HpyCH4IV	ACGT	1 cut(s)	700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 150, 722
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	8 cut(s)	319, 416, 523, 652, 722, 797, 827, 842
HspAI	GCGC	2 cut(s)	313, 399
Kpn2I	TCCGGA	1 cut(s)	583
Ksp22I	TGATCA	2 cut(s)	274, 835
Kzo9I	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
LmnI	GCTCC	2 cut(s)	246, 546
Lsp1109I	GCAGC	6 cut(s)	279, 734, 764, 779, 824, 854
LweI	GCATC	4 cut(s)	42, 779, 799, 824
MaeI	CTAG	3 cut(s)	17, 134, 332
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	3 cut(s)	19, 462, 617
MalI	GATC	8 cut(s)	276, 375, 518, 615, 687, 777, 837, 852
MboI	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
MboII	GAAGA	1 cut(s)	667
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	146
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	7 cut(s)	99, 283, 382, 562, 597, 745, 865
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	4 cut(s)	428, 518, 574, 667
MnlI	CCTC	2 cut(s)	700, 856
Mox20I	TGGCCA	1 cut(s)	405
MroI	TCCGGA	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	228, 759, 868
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	134, 150, 722
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
NlaIII	CATG	8 cut(s)	319, 416, 523, 652, 722, 797, 827, 842
NmuCI	GTSAC	1 cut(s)	462
NsbI	TGCGCA	1 cut(s)	314
PagI	TCATGA	1 cut(s)	793
PctI	GAATGC	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	294, 724, 754, 769, 814, 844
PleI	GAGTC	4 cut(s)	427, 518, 574, 666
PpsI	GAGTC	4 cut(s)	427, 518, 574, 666
Ppu21I	YACGTR	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	3 cut(s)	728, 773, 848
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	228, 759, 868
SatI	GCNGC	6 cut(s)	293, 723, 753, 768, 813, 843
Sau3AI	GATC	8 cut(s)	274, 373, 516, 613, 685, 775, 835, 850
SchI	GAGTC	4 cut(s)	428, 518, 574, 667
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	42, 779, 799, 824
SfcI	CTRYAG	1 cut(s)	423
Sse9I	AATT	7 cut(s)	99, 283, 382, 562, 597, 745, 865
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	2 cut(s)	346, 391
SspMI	CTAG	3 cut(s)	17, 134, 332
TaaI	ACNGT	4 cut(s)	12, 472, 485, 861
TaiI	ACGT	1 cut(s)	703
TasI	AATT	7 cut(s)	99, 283, 382, 562, 597, 745, 865
Tru1I	TTAA	3 cut(s)	228, 759, 868
Tru9I	TTAA	3 cut(s)	228, 759, 868
TscAI	CASTG	3 cut(s)	490, 496, 864
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	6 cut(s)	292, 722, 752, 767, 812, 842
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	6 cut(s)	195, 437, 552, 726, 810, 840
TspRI	CASTG	3 cut(s)	490, 496, 864
VneI	GTGCAC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	112
XspI	CTAG	3 cut(s)	17, 134, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.