Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009659

Physical Location & Seq

Genomic Coordinates Forward (+)

30718602 .. 30719749

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCAGTCCAAACCTGAACACGACGATGAAGCTCCAGTCGGCGATCCAACGTTAAAATTGGGCCTTAAACCCTGGCCTAGTTCGCCTAGTCCCGGGGCGGGCCTGATCAGCAAACTACAAAACAATACGAAGGCTTCAGACCACAAAGCGATATCTGCTTCAACCACCGCGTCATTGAAGCCGCCGGATCACATCGGAGCTCTGATTCTGGGAAGGTCTGAGTGCATTGTGCGTCTGAATGTAATCGAAGCCGCCGTTCATCATGGAGAATTTGAATCCGAATTTGAATCCAAACACAAGCTCAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.1

Weight (kDa)

6.58

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009659)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35253 FvH4_3g24442
prunus_persica	Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1
pyrus_communis	pycom14g07550
rosa_laevigata	RLG00000007937 RLG00000008445
rosa_roxburghii	Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610
rosa_rugosa	Rorug05G0209100
rosa_samantha	Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	98, 168, 182, 252
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	2 cut(s)	38, 195
AcsI	RAATTY	2 cut(s)	269, 281
AcuI	CTGAAG	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	92, 98
AgsI	TTSAA	4 cut(s)	162, 178, 275, 287
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	32, 200, 301
AluI	AGCT	3 cut(s)	32, 200, 301
Alw21I	GWGCWC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	38, 195
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	3 cut(s)	61, 74, 100
ApoI	RAATTY	2 cut(s)	269, 281
AspS9I	GGNCC	2 cut(s)	61, 100
AsuC2I	CCSGG	2 cut(s)	93, 94
AvaI	CYCGRG	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	73
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	2 cut(s)	93, 94
BfaI	CTAG	3 cut(s)	78, 87, 310
BisI	GCNGC	2 cut(s)	182, 252
BlsI	GCNGC	2 cut(s)	183, 253
Bme1390I	CCNGG	3 cut(s)	73, 93, 94
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	61, 100
BmrFI	CCNGG	3 cut(s)	73, 93, 94
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	302
BpuMI	CCSGG	2 cut(s)	93, 94
BsaJI	CCNNGG	3 cut(s)	71, 92, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 98
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	71, 92, 93
BseLI	CCNNNNNNNGG	2 cut(s)	92, 98
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	3 cut(s)	63, 76, 102
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	93, 185
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	92, 98
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	63, 76, 102
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	43, 105, 187
BspACI	CCGC	4 cut(s)	98, 168, 182, 252
BspANI	GGCC	3 cut(s)	63, 76, 102
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	170
BspPI	GGATC	2 cut(s)	38, 195
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	71, 92, 93
BssMI	GATC	3 cut(s)	43, 105, 187
Bst2UI	CCWGG	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	219, 302
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	46, 108, 190
BstMBI	GATC	3 cut(s)	43, 105, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 108, 155
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	71, 91, 92
BstUI	CGCG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	63, 76, 102
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	61, 100
Cfr9I	CCCGGG	1 cut(s)	92
CseI	GACGC	2 cut(s)	159, 221
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	9 cut(s)	32, 63, 76, 102, 134, 181, 200, 251, 301
CviKI_1	RGCY	9 cut(s)	32, 63, 76, 102, 134, 181, 200, 251, 301
DdeI	CTNAG	2 cut(s)	219, 302
DpnI	GATC	3 cut(s)	45, 107, 189
DpnII	GATC	3 cut(s)	43, 105, 187
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	1 cut(s)	266
FaiI	YATR	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	182, 252
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	182, 252
FspBI	CTAG	3 cut(s)	78, 87, 310
GluI	GCNGC	2 cut(s)	182, 252
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	63, 76, 102
HapII	CCGG	2 cut(s)	93, 185
HgaI	GACGC	2 cut(s)	159, 221
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	3 cut(s)	205, 275, 287
HpaII	CCGG	2 cut(s)	93, 185
Hpy188I	TCNGA	6 cut(s)	139, 197, 204, 220, 237, 280
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	124, 207
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	4, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 108, 155
HpyF3I	CTNAG	2 cut(s)	219, 302
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	43, 105, 187
LmnI	GCTCC	2 cut(s)	37, 197
LpnPI	CCDG	9 cut(s)	27, 48, 58, 85, 106, 116, 194, 198, 289
MaeI	CTAG	3 cut(s)	78, 87, 310
MaeII	ACGT	1 cut(s)	50
MalI	GATC	3 cut(s)	45, 107, 189
MboI	GATC	3 cut(s)	43, 105, 187
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	3 cut(s)	56, 269, 281
MmeI	TCCRAC	1 cut(s)	71
MseI	TTAA	2 cut(s)	53, 66
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	2 cut(s)	93, 185
MspR9I	CCNGG	3 cut(s)	73, 93, 94
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	82, 108, 155
NciI	CCSGG	2 cut(s)	93, 94
NdeII	GATC	3 cut(s)	43, 105, 187
NlaIII	CATG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	205, 275, 287
PkrI	GCNGC	2 cut(s)	183, 253
Psp124BI	GAGCTC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	61, 100
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	53, 66
SatI	GCNGC	2 cut(s)	182, 252
Sau3AI	GATC	3 cut(s)	43, 105, 187
Sau96I	GGNCC	2 cut(s)	61, 100
ScrFI	CCNGG	3 cut(s)	73, 93, 94
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	7 cut(s)	16, 34, 53, 202, 218, 303, 308
SmaI	CCCGGG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	3 cut(s)	56, 269, 281
SsiI	CCGC	4 cut(s)	98, 168, 182, 252
SspMI	CTAG	3 cut(s)	78, 87, 310
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	71, 91, 92
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	56, 269, 281
TauI	GCSGC	2 cut(s)	184, 254
TfiI	GAWTC	3 cut(s)	205, 275, 287
Tru1I	TTAA	2 cut(s)	53, 66
Tru9I	TTAA	2 cut(s)	53, 66
TspDTI	ATGAA	2 cut(s)	42, 248
TspMI	CCCGGG	1 cut(s)	92
XapI	RAATTY	2 cut(s)	269, 281
XmaI	CCCGGG	1 cut(s)	92
XspI	CTAG	3 cut(s)	78, 87, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.