Rroxscaffold_5G00340370

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009659
Physical Location & Seq
Forward (+)
8790596 .. 8813166
22571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340370.1

Sequence Viewer

Length: 303 bp
ATGGATGCAGAATCTTATGCAAGGTGCACGTATATGTTTGAGACGATCATGTTCGTTCTTGATATGAAGCATACATTTAATGATATTGTGAGGGAGGTTTCTGTGGGTTTTAATCATTTGAATCTTGGTTCATTCGACTTGAGATGGTCTAATACCAAGGTTGCCCATGAATATCGTCGCCAAGAATTCCATTCAGTGCCAATTTCTACCAACTTCCAGGACAATGTAGAACCCGAGGTACAGAACAAGAAGGATACGAATAGACTCATGATGATTAGTGATGCCACCTCACTTGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

100

Amino Acids

11.7

Weight (kDa)

5.44

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 35
Alw44I GTGCAC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 233
ApaLI GTGCAC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 29
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 156, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 156, 234
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 45
BspHI TCATGA 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 156, 234
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 30
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 29
BsuI GTATCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 267
Csp6I GTAC 1 cut(s) 239
CspCI CAANNNNNGTGG 1 cut(s) 274
CviAII CATG 3 cut(s) 49, 167, 268
CviQI GTAC 1 cut(s) 239
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 3 cut(s) 52, 170, 271
FaiI YATR 8 cut(s) 18, 33, 35, 50, 65, 72, 168, 269
FatI CATG 3 cut(s) 48, 166, 267
FokI GGATG 1 cut(s) 17
Hin1II CATG 3 cut(s) 52, 170, 271
HinfI GANTC 3 cut(s) 11, 121, 264
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 59, 268
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 8, 20, 27
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 3 cut(s) 52, 170, 271
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 203, 230
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 29
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 2 cut(s) 185, 201
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 4 cut(s) 84, 88, 229, 298
MseI TTAA 2 cut(s) 78, 111
MslI CAYNNNNRTG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
NdeII GATC 1 cut(s) 45
NlaIII CATG 3 cut(s) 52, 170, 271
PagI TCATGA 1 cut(s) 267
PfeI GAWTC 2 cut(s) 11, 121
PfoI TCCNGGA 1 cut(s) 216
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Ppu21I YACGTR 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 78, 111
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 29
SetI ASST 6 cut(s) 26, 32, 99, 162, 240, 290
SfaNI GCATC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 2 cut(s) 185, 201
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 185, 201
TfiI GAWTC 2 cut(s) 11, 121
Tru1I TTAA 2 cut(s) 78, 111
Tru9I TTAA 2 cut(s) 78, 111
TscAI CASTG 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 80, 120, 183
TspRI CASTG 1 cut(s) 201
VneI GTGCAC 1 cut(s) 25
XapI RAATTY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.