Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Forward (+)

22339939 .. 22343308

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G267900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTGAGAATTCTGCTTTTCAAGACGTGGACCAAGTTGATGCAAACAGTGAGCATATGGATCAGGGGAATGATGTAATGAGGGAAGACAAAGGTATATCTGGTGGGAGTGCATCTGGACGTTTTGGAGCCATCGACCTAGATGCTCATAATGTTGAAACCAGTGGTTCAGACACAAGCTCAACAAGAGGTAAAAATGCTGTAGATCAGATGGAAAACAGTGAATTCCCAAAGCCGAGTGCACACATAAAAGAAAGTGGATATGGAGGAACCGCAGAGGATGAAAAGGTTGAAACTGTTCAGTGTGAGGAAAAGCAGCGAAGGAAACGGAAACGAACAATAATGAATGATACACAGGTGGAACTTATTGAGAGAGCCCTATTAGATGAACCTGATATGCAGCGAAATGCAGCCTCAATACAATCATGGGCTGAGAAATTAAGTTTTCATGGTTCCGAGGTTACATGTCCACAGCTTAAAAATTGCACAATGTTTATGTGCAAGATATTTTCGCACCGCACCAATCACTATCCTACTGCCGTGAATATTTGGATGGTTGCTTGTTATGAAAACATCATGTTTTTGTGTCTCCGCAGGTTAAACAATCGAAAAGCCAGGCTAGCCCGCACAGCTAAGGATGTTCGTCCAGCACCTGAGGCTGACAATGCGTTGCAAGACAAGCAAGGTGGGCGAGGACTAAGGTCCAACAACTCACCTGATACCCCTGGTGGAGATGCTTCCAGCCAACTAAATGTGAGGAGAGATCATCAAATCATGTTGAGAACTGGTATCAGGGAGATCTCTGAGACTAACGTGGCAGAAGCCGCTGCCCCCCGTGGTCCTGCAGAATTTGATCTGTGCAAGCAAGGCGACTCCATTGGCCTCATGGGTGCAAATGGAGAGGAGATTGGGAGAGGAAAGGTGTTTCAGGTGCGTGGCCAATGGTATGGAAGAAACTTGGAGGAGTTGAGGGCATACGTTGTGGATGTTAAAGACCTAAAAGCTAGAAGAGCAACGAGGCTTCCGCACCCGTCTGTAGCCACAGGTGTCTCATTTGAGGAGGCTGAAACAAAGATTGGCGTAATGAGAGTGTTATGGGATTCAAACATGACTTTCACATTGCGTCCTAAACGAGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

42.34

Weight (kDa)

6.49

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	585
AciI	CCGC	6 cut(s)	273, 517, 592, 625, 825, 1025
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	3 cut(s)	10, 224, 848
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	23, 158, 293, 1104
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	614, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	1059, 1091
AluBI	AGCT	4 cut(s)	180, 475, 632, 1004
AluI	AGCT	4 cut(s)	180, 475, 632, 1004
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	3 cut(s)	593, 800, 1054
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	880, 937
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	316, 400, 410, 827
ApoI	RAATTY	3 cut(s)	10, 224, 848
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	3 cut(s)	31, 702, 839
AsuHPI	GGTGA	1 cut(s)	705
AsuNHI	GCTAGC	1 cut(s)	619
AvaII	GGWCC	3 cut(s)	31, 702, 839
AxyI	CCTNAGG	1 cut(s)	654
BaeGI	GKGCMC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BalI	TGGCCA	1 cut(s)	939
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	328, 412, 422, 814
BccI	CCATC	3 cut(s)	140, 205, 547
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	2 cut(s)	616, 726
BcoDI	GTCTC	3 cut(s)	593, 800, 1054
BfaI	CTAG	3 cut(s)	140, 620, 1005
BfmI	CTRYAG	3 cut(s)	201, 843, 1035
BfuAI	ACCTGC	1 cut(s)	585
BglII	AGATCT	1 cut(s)	798
BisI	GCNGC	5 cut(s)	317, 401, 411, 825, 828
BlsI	GCNGC	5 cut(s)	318, 402, 412, 826, 829
Bme1390I	CCNGG	2 cut(s)	616, 726
Bme18I	GGWCC	3 cut(s)	31, 702, 839
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	3 cut(s)	31, 702, 839
BmiI	GGNNCC	3 cut(s)	130, 271, 454
BmrFI	CCNGG	2 cut(s)	616, 726
BmsI	GCATC	4 cut(s)	31, 122, 133, 724
BmtI	GCTAGC	1 cut(s)	623
BoxI	GACNNNNGTC	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	456, 724, 835
Bse1I	ACTGG	2 cut(s)	162, 790
Bse21I	CCTNAGG	1 cut(s)	654
Bse3DI	GCAATG	2 cut(s)	1118, 1143
BseBI	CCWGG	2 cut(s)	616, 726
BseDI	CCNNGG	3 cut(s)	456, 724, 835
BseGI	GGATG	4 cut(s)	286, 558, 643, 991
BseMI	GCAATG	2 cut(s)	1118, 1143
BseMII	CTCAG	3 cut(s)	423, 645, 795
BseNI	ACTGG	2 cut(s)	162, 790
BseRI	GAGGAG	4 cut(s)	772, 917, 977, 1073
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	4 cut(s)	328, 412, 422, 814
BshFI	GGCC	2 cut(s)	882, 939
BsiHKAI	GWGCWC	1 cut(s)	244
BsmAI	GTCTC	3 cut(s)	593, 800, 1054
BsnI	GGCC	2 cut(s)	882, 939
Bsp1286I	GDGCHC	2 cut(s)	244, 379
Bsp143I	GATC	5 cut(s)	61, 205, 763, 798, 853
BspACI	CCGC	6 cut(s)	273, 517, 592, 625, 825, 1025
BspANI	GGCC	2 cut(s)	882, 939
BspCNI	CTCAG	3 cut(s)	424, 646, 796
BspLI	GGNNCC	3 cut(s)	130, 271, 454
BspMAI	CTGCAG	1 cut(s)	847
BspMI	ACCTGC	1 cut(s)	585
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	1003
BsrDI	GCAATG	2 cut(s)	1118, 1143
BsrI	ACTGG	2 cut(s)	162, 790
BssECI	CCNNGG	3 cut(s)	456, 724, 835
BssMI	GATC	5 cut(s)	61, 205, 763, 798, 853
Bst2UI	CCWGG	2 cut(s)	616, 726
Bst4CI	ACNGT	3 cut(s)	50, 221, 298
Bst6I	CTCTTC	1 cut(s)	1003
BstC8I	GCNNGC	3 cut(s)	621, 625, 863
BstDEI	CTNAG	6 cut(s)	6, 432, 633, 654, 698, 804
BstDSI	CCRYGG	1 cut(s)	835
BstF5I	GGATG	4 cut(s)	286, 558, 643, 991
BstKTI	GATC	5 cut(s)	64, 208, 766, 801, 856
BstMAI	GTCTC	3 cut(s)	593, 800, 1054
BstMBI	GATC	5 cut(s)	61, 205, 763, 798, 853
BstMWI	GCNNNNNNNGC	9 cut(s)	620, 629, 656, 665, 679, 688, 824, 867, 1010
BstNI	CCWGG	2 cut(s)	616, 726
BstNSI	RCATGY	1 cut(s)	468
BstPAI	GACNNNNGTC	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	614, 724
BstSFI	CTRYAG	3 cut(s)	201, 843, 1035
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	328, 412, 422, 814
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	798
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	798
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	882, 939
BtgI	CCRYGG	1 cut(s)	835
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	4 cut(s)	286, 558, 643, 991
BtsIMutI	CAGTG	4 cut(s)	55, 169, 226, 308
BveI	ACCTGC	1 cut(s)	585
Cac8I	GCNNGC	3 cut(s)	621, 625, 863
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr13I	GGNCC	3 cut(s)	31, 702, 839
CseI	GACGC	1 cut(s)	1112
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	7 cut(s)	426, 449, 465, 577, 775, 886, 1108
DdeI	CTNAG	6 cut(s)	6, 432, 633, 654, 698, 804
DpnI	GATC	5 cut(s)	63, 207, 765, 800, 855
DpnII	GATC	5 cut(s)	61, 205, 763, 798, 853
EaeI	YGGCCR	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	1003
EarI	CTCTTC	1 cut(s)	1003
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	3 cut(s)	31, 702, 839
Eco81I	CCTNAGG	1 cut(s)	654
EcoRI	GAATTC	2 cut(s)	10, 224
EcoRII	CCWGG	2 cut(s)	614, 724
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	7 cut(s)	429, 452, 468, 580, 778, 889, 1111
FatI	CATG	7 cut(s)	425, 448, 464, 576, 774, 885, 1107
FauI	CCCGC	1 cut(s)	632
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	317, 401, 411, 825, 828
FokI	GGATG	4 cut(s)	293, 565, 650, 998
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	5 cut(s)	317, 401, 411, 825, 828
FspBI	CTAG	3 cut(s)	140, 620, 1005
GluI	GCNGC	5 cut(s)	317, 401, 411, 825, 828
HaeIII	GGCC	2 cut(s)	882, 939
HgaI	GACGC	1 cut(s)	1112
Hin1II	CATG	7 cut(s)	429, 452, 468, 580, 778, 889, 1111
HinfI	GANTC	2 cut(s)	872, 1100
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	3 cut(s)	31, 242, 470
Hpy188I	TCNGA	5 cut(s)	7, 172, 210, 457, 805
Hpy188III	TCNNGA	2 cut(s)	23, 117
Hpy8I	GTNNAC	3 cut(s)	31, 242, 470
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	3 cut(s)	50, 221, 298
HpyCH4IV	ACGT	4 cut(s)	27, 121, 813, 978
HpyF10VI	GCNNNNNNNGC	9 cut(s)	620, 629, 656, 665, 679, 688, 824, 867, 1010
HpyF3I	CTNAG	6 cut(s)	6, 432, 633, 654, 698, 804
HpySE526I	ACGT	4 cut(s)	27, 121, 813, 978
Hsp92II	CATG	7 cut(s)	429, 452, 468, 580, 778, 889, 1111
Kzo9I	GATC	5 cut(s)	61, 205, 763, 798, 853
LguI	GCTCTTC	1 cut(s)	1003
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	4 cut(s)	328, 412, 422, 814
LweI	GCATC	4 cut(s)	31, 122, 133, 724
MaeI	CTAG	3 cut(s)	140, 620, 1005
MaeII	ACGT	4 cut(s)	27, 121, 813, 978
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	5 cut(s)	63, 207, 765, 800, 855
MboI	GATC	5 cut(s)	61, 205, 763, 798, 853
MboII	GAAGA	3 cut(s)	98, 963, 1020
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	2 cut(s)	244, 379
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	5 cut(s)	10, 224, 437, 481, 848
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	1 cut(s)	729
Mox20I	TGGCCA	1 cut(s)	939
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	4 cut(s)	440, 477, 599, 990
Msp20I	TGGCCA	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	827
MspR9I	CCNGG	2 cut(s)	616, 726
MvaI	CCWGG	2 cut(s)	616, 726
MwoI	GCNNNNNNNGC	9 cut(s)	620, 629, 656, 665, 679, 688, 824, 867, 1010
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	5 cut(s)	61, 205, 763, 798, 853
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	7 cut(s)	429, 452, 468, 580, 778, 889, 1111
NlaIV	GGNNCC	3 cut(s)	130, 271, 454
NmeAIII	GCCGAG	1 cut(s)	261
NspI	RCATGY	1 cut(s)	468
PciI	ACATGT	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	1003
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	1100
PkrI	GCNGC	5 cut(s)	318, 402, 412, 826, 829
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PscI	ACATGT	1 cut(s)	464
PshAI	GACNNNNGTC	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	614, 724
PspGI	CCWGG	2 cut(s)	614, 724
PspN4I	GGNNCC	3 cut(s)	130, 271, 454
PspPI	GGNCC	3 cut(s)	31, 702, 839
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	1003
SaqAI	TTAA	4 cut(s)	440, 477, 599, 990
SatI	GCNGC	5 cut(s)	317, 401, 411, 825, 828
Sau3AI	GATC	5 cut(s)	61, 205, 763, 798, 853
Sau96I	GGNCC	3 cut(s)	31, 702, 839
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	616, 726
SduI	GDGCHC	2 cut(s)	244, 379
SfaNI	GCATC	4 cut(s)	31, 122, 133, 724
SfcI	CTRYAG	3 cut(s)	201, 843, 1035
SinI	GGWCC	3 cut(s)	31, 702, 839
Sse9I	AATT	5 cut(s)	10, 224, 437, 481, 848
SsiI	CCGC	6 cut(s)	273, 517, 592, 625, 825, 1025
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	3 cut(s)	140, 620, 1005
StyD4I	CCNGG	2 cut(s)	614, 724
TaaI	ACNGT	3 cut(s)	50, 221, 298
TaiI	ACGT	4 cut(s)	30, 124, 816, 981
TaqI	TCGA	2 cut(s)	135, 607
TasI	AATT	5 cut(s)	10, 224, 437, 481, 848
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	1 cut(s)	1100
Tru1I	TTAA	4 cut(s)	440, 477, 599, 990
Tru9I	TTAA	4 cut(s)	440, 477, 599, 990
TscAI	CASTG	4 cut(s)	55, 169, 226, 308
TseI	GCWGC	4 cut(s)	316, 400, 410, 827
TspDTI	ATGAA	5 cut(s)	297, 359, 402, 437, 582
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	4 cut(s)	55, 169, 226, 308
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	3 cut(s)	31, 702, 839
XapI	RAATTY	3 cut(s)	10, 224, 848
XceI	RCATGY	1 cut(s)	468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	3 cut(s)	140, 620, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.