Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Reverse (-)

54311859 .. 54319415

Gene Structure 7557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG339200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGTTTGGTAGAATGAAACCGGTTAAAGAAGAGCCGTCGTCATGCAATGCTTCACAAGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAACTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGGAATCAAGTCTAAAGATTGACGTTGAAAGGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGATACTTAACATGTGGCATCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTGTCAGAACAGCTGCTTGACCTGGTGTTCTATATCCTCATTGTTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACCGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTCATGTTTCCATCAAGTTTCTCAACCTCAAGCTTTCATCTCAACATACCGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCATTCTCTCTGCCAGCCATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTACTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTGGCTCAAGCCATCTTGAAGCTAAACATTGCGCCTCATTTTGTAGCATCTGCTAGAATAGTGGCTGCTGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGCATATCTTACCTGGACGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGATCCCAGATGTTTTGCTGCTTGTTCTGATGGAAGTTATCCGATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATTACAATACATTTTACAAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGATTTTTTATCCAGTTGGTGTTCATCTGTACTCCCTGTAAAGGAAGAAGATGGCACTATTGATATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAACCTCCATTGTTTCATTCCCACTATCTGTGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCCTTTGCTTCTGATACTCTGAAAGCGGCAACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCCGAATCTCTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGAGAAGAAATGTGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACTTGGAGGAAATAAAGTCCGAGAATTCTGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATATGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCATCTGGACGATTTACAGCAATCAACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGCGAAACAAGAGGTAAAAATGCTGTTGATCCAATGGGAAACAGTGAATTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCAGCATCACTACAATCATGGGCTGATAAATTAAGTTCTCATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGCTGAACAATCGAAAAGCCAGGCTGGCCCGTACAAAGGATGTTCGTGCAGCACCAGAGTTCAATGCACTACCAGATAAGCAAGGTGTGCAAGGACTGAGGTCCAACAACTCAGCCGAGAGCCCTATTGGAAATGCTTCTGCACAACTAAATGTGAGGAGTGATCCTCAAATGAAGCTAAATAGTAGTGTAGTCCAGATCTCTGGGACAAAAGCAGCAGAAGCTATTGCCCGTGGTCCTTCAGAATTTGTTCCATGCAAGCAAGGTGACTGTGTTTTGCTTAAATATAATAACGGAGAGGAGGTTGGCATAGGAAAGGTGTTTCAGGCAAGTGGCCAATGGTTTGGGAGGAACTTGGAGGAGTTGAGGGCATATGTTGTGGATATCAAAGAGCTTAAAGTTAGAAGAGCAATGAAGCTTCCATACCCATCTATGGCCACAGGTGGTTCATTTGAGGAGGCTGAAACAAAGATTGGCTTAATGAGAGTGTTATGGGATTCAAGCAAGACTTTCAAATTGCCTCCTCTAAGGTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

924

Amino Acids

102.55

Weight (kDa)

5.89

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	19 - 422	7.6e-208	Nodulin N-terminal domain
Nodulin_N	PF25246	422 - 503	5.5e-36	Nodulin N-terminal domain
HTH_NDX	PF24426	699 - 759	5e-35	NDX Homeobox-like domain
Nodulin_C	PF24679	829 - 914	1.6e-35	Nodulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	3 cut(s)	77, 452, 1460
AclWI	GGATC	6 cut(s)	1031, 1403, 1416, 1821, 1952, 2393
AcoI	YGGCCR	2 cut(s)	2569, 2670
AcsI	RAATTY	7 cut(s)	139, 658, 1431, 1631, 1762, 1976, 2480
AcuI	CTGAAG	2 cut(s)	2036, 2460
AfaI	GTAC	5 cut(s)	160, 1233, 1542, 1849, 2269
AfiI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2272, 2668
AflIII	ACRYGT	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	19
AhlI	ACTAGT	2 cut(s)	469, 665
AjnI	CCWGG	7 cut(s)	384, 942, 964, 972, 1272, 1426, 2255
AjuI	GAANNNNNNNTTGG	2 cut(s)	2691, 2723
Alw21I	GWGCWC	1 cut(s)	1027
AlwI	GGATC	6 cut(s)	1031, 1403, 1416, 1821, 1952, 2393
AlwNI	CAGNNNCTG	2 cut(s)	112, 1549
Ama87I	CYCGRG	1 cut(s)	2025
AoxI	GGCC	5 cut(s)	474, 705, 2262, 2569, 2670
ApeKI	GCWGC	9 cut(s)	376, 575, 869, 969, 1052, 2152, 2162, 2285, 2450
ApoI	RAATTY	7 cut(s)	139, 658, 1431, 1631, 1762, 1976, 2480
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	3 cut(s)	2049, 2371, 2484
AspLEI	GCGC	4 cut(s)	838, 1107, 2116, 2157
AspS9I	GGNCC	4 cut(s)	1783, 2263, 2337, 2471
AsuHPI	GGTGA	3 cut(s)	91, 1677, 2513
AvaI	CYCGRG	1 cut(s)	2025
AvaII	GGWCC	3 cut(s)	1783, 2337, 2471
AxyI	CCTNAGG	2 cut(s)	552, 1550
BalI	TGGCCA	2 cut(s)	2571, 2672
BamHI	GGATCC	1 cut(s)	1408
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	2360
BarI	GAAGNNNNNNTAC	2 cut(s)	2642, 2674
BbsI	GAAGAC	1 cut(s)	1845
Bbv12I	GWGCWC	1 cut(s)	1027
BbvI	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2164, 2174, 2297, 2462
BccI	CCATC	7 cut(s)	608, 824, 1058, 1072, 1247, 1420, 2671
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	4 cut(s)	1170, 1204, 1748, 1782
BciT130I	CCWGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
BcuI	ACTAGT	2 cut(s)	469, 665
BfaI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1857
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	2117
BglI	GCCNNNNNGGC	1 cut(s)	2261
BglII	AGATCT	2 cut(s)	523, 2433
Bme1390I	CCNGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
Bme18I	GGWCC	3 cut(s)	1783, 2337, 2471
BmeT110I	CYCGRG	1 cut(s)	2025
BmgT120I	GGNCC	4 cut(s)	1783, 2263, 2337, 2471
BmiI	GGNNCC	4 cut(s)	450, 1370, 1410, 2206
BmrFI	CCNGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	7 cut(s)	294, 447, 860, 1670, 1816, 1874, 2174
BmuI	ACTGGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	2335
BpiI	GAAGAC	1 cut(s)	1845
BplI	GAGNNNNNCTC	4 cut(s)	2032, 2064, 2386, 2418
BpmI	CTGGAG	1 cut(s)	1695
BpuEI	CTTGAG	2 cut(s)	602, 795
BsaBI	GATNNNNATC	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	964, 1272, 2467
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	4 cut(s)	705, 735, 2523, 2553
Bsc4I	CCNNNNNNNGG	4 cut(s)	979, 1243, 2272, 2668
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	5 cut(s)	117, 204, 502, 1215, 1678
Bse21I	CCTNAGG	2 cut(s)	552, 1550
Bse3DI	GCAATG	7 cut(s)	52, 831, 1421, 1487, 1836, 2164, 2652
Bse8I	GATNNNNATC	1 cut(s)	505
BseBI	CCWGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
BseDI	CCNNGG	3 cut(s)	964, 1272, 2467
BseGI	GGATG	7 cut(s)	506, 547, 1543, 1685, 1828, 2038, 2281
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2272, 2668
BseMI	GCAATG	7 cut(s)	52, 831, 1421, 1487, 1836, 2164, 2652
BseMII	CTCAG	5 cut(s)	119, 778, 1541, 2324, 2361
BseNI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1678
BseRI	GAGGAG	8 cut(s)	1547, 1610, 1625, 2407, 2549, 2609, 2705, 2748
BseXI	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2164, 2174, 2297, 2462
BsgI	GTGCAG	4 cut(s)	203, 450, 2304, 2361
BshFI	GGCC	5 cut(s)	476, 707, 2264, 2571, 2672
BshNI	GGYRCC	1 cut(s)	448
BshTI	ACCGGT	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	2025
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	143, 2455
BslI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2272, 2668
BsmFI	GGGAC	2 cut(s)	143, 2455
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	476, 707, 2264, 2571, 2672
BsoBI	CYCGRG	1 cut(s)	2025
Bsp1286I	GDGCHC	2 cut(s)	1027, 2360
Bsp1407I	TGTACA	1 cut(s)	1540
Bsp143I	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
BspACI	CCGC	3 cut(s)	77, 452, 1460
BspANI	GGCC	5 cut(s)	476, 707, 2264, 2571, 2672
BspCNI	CTCAG	5 cut(s)	118, 777, 1542, 2325, 2360
BspLI	GGNNCC	4 cut(s)	450, 1370, 1410, 2206
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	6 cut(s)	1031, 1403, 1416, 1821, 1952, 2393
BspQI	GCTCTTC	2 cut(s)	24, 2635
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	7 cut(s)	52, 831, 1421, 1487, 1836, 2164, 2652
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	1540
BsrI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1678
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	964, 1272, 2467
BssMI	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
Bst2UI	CCWGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
Bst4CI	ACNGT	5 cut(s)	516, 717, 1802, 1973, 2507
Bst6I	CTCTTC	3 cut(s)	24, 2055, 2635
BstAPI	GCANNNNNTGC	1 cut(s)	2323
BstAUI	TGTACA	1 cut(s)	1540
BstDSI	CCRYGG	1 cut(s)	2467
BstF5I	GGATG	7 cut(s)	506, 547, 1543, 1685, 1828, 2038, 2281
BstH2I	RGCGCY	1 cut(s)	2117
BstHHI	GCGC	4 cut(s)	838, 1107, 2116, 2157
BstKTI	GATC	8 cut(s)	526, 1039, 1145, 1411, 1816, 1960, 2401, 2436
BstMBI	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
BstNI	CCWGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	2335
BstSCI	CCNGG	7 cut(s)	384, 942, 964, 972, 1272, 1426, 2255
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2164, 2174, 2297, 2462
BstV2I	GAAGAC	1 cut(s)	1845
BstX2I	RGATCY	4 cut(s)	523, 1036, 1408, 2433
BstXI	CCANNNNNNTGG	2 cut(s)	2438, 2579
BstYI	RGATCY	4 cut(s)	523, 1036, 1408, 2433
Bsu36I	CCTNAGG	2 cut(s)	552, 1550
BsuRI	GGCC	5 cut(s)	476, 707, 2264, 2571, 2672
BtgI	CCRYGG	1 cut(s)	2467
BtsCI	GGATG	7 cut(s)	506, 547, 1543, 1685, 1828, 2038, 2281
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	237, 521, 1807, 1978
CaiI	CAGNNNCTG	2 cut(s)	112, 1549
CfoI	GCGC	4 cut(s)	838, 1107, 2116, 2157
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	4 cut(s)	1783, 2263, 2337, 2471
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	5 cut(s)	159, 1232, 1541, 1848, 2268
CspAI	ACCGGT	1 cut(s)	19
CviQI	GTAC	5 cut(s)	159, 1232, 1541, 1848, 2268
DpnI	GATC	8 cut(s)	525, 1038, 1144, 1410, 1815, 1959, 2400, 2435
DpnII	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
EaeI	YGGCCR	2 cut(s)	2569, 2670
Eam1104I	CTCTTC	3 cut(s)	24, 2055, 2635
EarI	CTCTTC	3 cut(s)	24, 2055, 2635
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	2360
Eco32I	GATATC	2 cut(s)	1117, 2620
Eco47I	GGWCC	3 cut(s)	1783, 2337, 2471
Eco57I	CTGAAG	2 cut(s)	2036, 2460
Eco81I	CCTNAGG	2 cut(s)	552, 1550
Eco88I	CYCGRG	1 cut(s)	2025
EcoRI	GAATTC	1 cut(s)	1762
EcoRII	CCWGG	7 cut(s)	384, 942, 964, 972, 1272, 1426, 2255
EcoRV	GATATC	2 cut(s)	1117, 2620
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	2360
FalI	AAGNNNNNCTT	8 cut(s)	525, 557, 922, 954, 2696, 2728, 2728, 2760
FaqI	GGGAC	2 cut(s)	143, 2455
FauNDI	CATATG	2 cut(s)	1809, 2608
FokI	GGATG	7 cut(s)	513, 534, 1550, 1692, 1835, 2045, 2288
FriOI	GRGCYC	1 cut(s)	2360
FspBI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1857
GlaI	GCGC	4 cut(s)	837, 1106, 2115, 2156
GsuI	CTGGAG	1 cut(s)	1695
HaeII	RGCGCY	1 cut(s)	2117
HaeIII	GGCC	5 cut(s)	476, 707, 2264, 2571, 2672
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	4 cut(s)	838, 1107, 2116, 2157
Hin6I	GCGC	4 cut(s)	836, 1105, 2114, 2155
HinP1I	GCGC	4 cut(s)	836, 1105, 2114, 2155
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	620, 2651
HinfI	GANTC	7 cut(s)	131, 170, 913, 1130, 1505, 1574, 2732
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	91, 1677, 2513
Hpy166II	GTNNAC	7 cut(s)	485, 559, 671, 1783, 1798, 1994, 2045
Hpy8I	GTNNAC	7 cut(s)	485, 559, 671, 1783, 1798, 1994, 2045
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	76, 1704, 1813, 2484
HpyCH4III	ACNGT	5 cut(s)	516, 717, 1802, 1973, 2507
HpyCH4IV	ACGT	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	4 cut(s)	836, 1105, 2114, 2155
Kzo9I	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
LguI	GCTCTTC	2 cut(s)	24, 2635
LmnI	GCTCC	4 cut(s)	584, 965, 1197, 1551
Lsp1109I	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2164, 2174, 2297, 2462
LweI	GCATC	7 cut(s)	294, 447, 860, 1670, 1816, 1874, 2174
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1857
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	5 cut(s)	87, 1669, 1736, 2212, 2501
MalI	GATC	8 cut(s)	525, 1038, 1144, 1410, 1815, 1959, 2400, 2435
MboI	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	4 cut(s)	523, 1036, 1408, 2433
MhlI	GDGCHC	2 cut(s)	1027, 2360
MlsI	TGGCCA	2 cut(s)	2571, 2672
MluNI	TGGCCA	2 cut(s)	2571, 2672
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	2364
Mox20I	TGGCCA	2 cut(s)	2571, 2672
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	3 cut(s)	2049, 2371, 2484
MscI	TGGCCA	2 cut(s)	2571, 2672
MslI	CAYNNNNRTG	2 cut(s)	566, 1589
Msp20I	TGGCCA	2 cut(s)	2571, 2672
MspA1I	CMGCKG	3 cut(s)	77, 376, 454
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
NdeI	CATATG	2 cut(s)	1809, 2608
NdeII	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
NlaIV	GGNNCC	4 cut(s)	450, 1370, 1410, 2206
NmeAIII	GCCGAG	1 cut(s)	2377
NmuCI	GTSAC	2 cut(s)	2212, 2501
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	2025
PceI	AGGCCT	1 cut(s)	707
PciI	ACATGT	1 cut(s)	278
PciSI	GCTCTTC	2 cut(s)	24, 2635
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	3 cut(s)	2049, 2371, 2484
PfeI	GAWTC	6 cut(s)	170, 913, 1130, 1505, 1574, 2732
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	2335
Psp6I	CCWGG	7 cut(s)	384, 942, 964, 972, 1272, 1426, 2255
PspGI	CCWGG	7 cut(s)	384, 942, 964, 972, 1272, 1426, 2255
PspN4I	GGNNCC	4 cut(s)	450, 1370, 1410, 2206
PspPI	GGNCC	4 cut(s)	1783, 2263, 2337, 2471
PstI	CTGCAG	1 cut(s)	482
PstNI	CAGNNNCTG	2 cut(s)	112, 1549
PsuI	RGATCY	4 cut(s)	523, 1036, 1408, 2433
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	5 cut(s)	160, 1233, 1542, 1849, 2269
RsaNI	GTAC	5 cut(s)	159, 1232, 1541, 1848, 2268
RseI	CAYNNNNRTG	2 cut(s)	566, 1589
SapI	GCTCTTC	2 cut(s)	24, 2635
Sau3AI	GATC	8 cut(s)	523, 1036, 1142, 1408, 1813, 1957, 2398, 2433
Sau96I	GGNCC	4 cut(s)	1783, 2263, 2337, 2471
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	7 cut(s)	386, 944, 966, 974, 1274, 1428, 2257
SduI	GDGCHC	2 cut(s)	1027, 2360
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	7 cut(s)	294, 447, 860, 1670, 1816, 1874, 2174
SfcI	CTRYAG	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	2025
SinI	GGWCC	3 cut(s)	1783, 2337, 2471
SlaI	CTCGAG	1 cut(s)	2025
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1589
SmlI	CTYRAG	3 cut(s)	617, 810, 2025
SmoI	CTYRAG	3 cut(s)	617, 810, 2025
SpeI	ACTAGT	2 cut(s)	469, 665
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	3 cut(s)	77, 452, 1460
SspI	AATATT	2 cut(s)	1185, 1622
SspMI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1857
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	7 cut(s)	384, 942, 964, 972, 1272, 1426, 2255
TaaI	ACNGT	5 cut(s)	516, 717, 1802, 1973, 2507
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	322, 351, 1141, 2026, 2248
TatI	WGTACW	2 cut(s)	1231, 1540
TauI	GCSGC	1 cut(s)	1463
TfiI	GAWTC	6 cut(s)	170, 913, 1130, 1505, 1574, 2732
TscAI	CASTG	4 cut(s)	237, 521, 1807, 1978
TseFI	GTSAC	2 cut(s)	2212, 2501
TseI	GCWGC	9 cut(s)	376, 575, 869, 969, 1052, 2152, 2162, 2285, 2450
Tsp45I	GTSAC	2 cut(s)	2212, 2501
TspGWI	ACGGA	3 cut(s)	1850, 2095, 2544
TspRI	CASTG	4 cut(s)	237, 521, 1807, 1978
VpaK11BI	GGWCC	3 cut(s)	1783, 2337, 2471
XapI	RAATTY	7 cut(s)	139, 658, 1431, 1631, 1762, 1976, 2480
XceI	RCATGY	1 cut(s)	282
XhoI	CTCGAG	1 cut(s)	2025
XmnI	GAANNNNTTC	3 cut(s)	2049, 2371, 2484
XspI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1857
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.