Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Reverse (-)

53619659 .. 53626208

Gene Structure 6550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGAAACCGGTTAAAGAAGAGCCGTCGTCATGCAATGCTTCACAAGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAATTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGGAATCAAGTCTAAAGATTGACGTTGAAAAGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGATACTTAACATGTGGCATCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTGTCAGAACAGCTGCTTGATCTGGTGTTCTATATCCTCATTGTTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACCGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTAATGTTTCCATCATGTTTCTCAACCTCAAGCTTTCATCTCAACATACCGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCATTCTCTCTGCCAGCAATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTACTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTGGCTCAAGCCATCTTGAAGCTAAACATTGGGCCTCATTTTGTAGCATCTGCTAGAATTGTGGCTGCTGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGCATATCTTACCTGGATGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGAACCCAGATGTTTTGCTGCTTGTTCTGATGGAAGTTATCCGATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATTACAATACATTTTACTAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGAATTTTTATCCAGTTGGTGTTCATCTGTACTCCCTGTAGAGGAAGAAGATGGCACTATTGAGTATGATTCCTTTGCAACAGCTGGATGGGTTTTGGATGTAGTTTCATCTATTGAACTGCATAATGCACGAAGTTTAGAATTTTCTGTACCTCGCAACAGTATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAACCTCCATTGTTTCATTCCCACTATCTGTGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCCTTTGCTTCTGATACTCTGAAAGCGGCAACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCCGAATCTCTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGTAAAAGAGAAGAAATGCGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACCTGGAGGAAATAAAGTCCGAGAATTCTGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATGTGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCTTCTGGACGATTTACAGCAATCGACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGTGAAACAAGAGGTAAAAATGCTGTTGATCCAATGGGAAACAGTGAATTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCAGCATCACTACAATCATGGGCTGATAAATTAAGTTCTTATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGCTGAACAATCGAAAAGCCAGGCTGGCCCGTACAAAGGATGTTCGTGCAGCACCAGAGTTCAATGCACTACCAGATAAGCAAGGTGTGCAAGGACTGAGGTCCAACAACTCGGCCGAGAGTCCTATTGGAAATGCTTCTGCACAACTAAATGTGAGGAGTGATCCTCAAATGAAGCTGAATAGTAGTGTAGTCCAGATCTCTGGGACAAAAGCAGCAGAAGCTATTGCCCGTGGTGCTTCAGAATTTGTTCCATGCAAGCAAGGTGACTGTGTTTTGCTTAAATATAATAACGGAGAGGAGGTTGGCATGGGAAAGGTGTTTCAGGCAAGTGGCCAATGGTTTGGGAGGAACTTGGAGGAGTTGAGGGCATATGTTGTGGATATCAAAGAGCTTAAAGTTAGAAGAGCAATGAAGCTTCCATACCCATCTATGGCCACAGGTGGTTCATTTGAGGAGGCTGAAACAAAGATTGGCTTAATGAGAGTGTTATGGGATTCAAGCAAGACTTTCAAATTGCCTCCTCTAAGGTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

955

Amino Acids

105.93

Weight (kDa)

5.58

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	15 - 532	1.9e-261	Nodulin N-terminal domain
HTH_NDX	PF24426	730 - 790	2.3e-34	NDX Homeobox-like domain
Nodulin_C	PF24679	860 - 945	9.3e-36	Nodulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AciI	CCGC	3 cut(s)	65, 440, 1547
AclWI	GGATC	5 cut(s)	1490, 1503, 1914, 2045, 2486
AcoI	YGGCCR	3 cut(s)	2442, 2662, 2763
AcsI	RAATTY	9 cut(s)	127, 646, 1193, 1331, 1518, 1724, 1855, 2069, 2573
AcuI	CTGAAG	2 cut(s)	2129, 2553
AfaI	GTAC	6 cut(s)	148, 1221, 1341, 1629, 1942, 2362
AfiI	CCNNNNNNNGG	4 cut(s)	967, 1231, 2365, 2761
AflIII	ACRYGT	1 cut(s)	266
AgeI	ACCGGT	1 cut(s)	7
AhlI	ACTAGT	2 cut(s)	457, 653
AjnI	CCWGG	7 cut(s)	930, 952, 960, 1359, 1513, 1833, 2348
AjuI	GAANNNNNNNTTGG	2 cut(s)	2784, 2816
Alw21I	GWGCWC	1 cut(s)	1015
AlwI	GGATC	5 cut(s)	1490, 1503, 1914, 2045, 2486
AlwNI	CAGNNNCTG	2 cut(s)	100, 1636
Ama87I	CYCGRG	1 cut(s)	2118
AoxI	GGCC	7 cut(s)	462, 693, 824, 2355, 2442, 2662, 2763
ApeKI	GCWGC	9 cut(s)	364, 563, 857, 957, 1040, 2245, 2255, 2378, 2543
ApoI	RAATTY	9 cut(s)	127, 646, 1193, 1331, 1518, 1724, 1855, 2069, 2573
AsiGI	ACCGGT	1 cut(s)	7
Asp700I	GAANNNNTTC	4 cut(s)	1957, 2142, 2464, 2577
AspLEI	GCGC	3 cut(s)	1095, 2209, 2250
AspS9I	GGNCC	4 cut(s)	824, 1876, 2356, 2430
AsuHPI	GGTGA	3 cut(s)	79, 1770, 2606
AvaI	CYCGRG	1 cut(s)	2118
AvaII	GGWCC	2 cut(s)	1876, 2430
AxyI	CCTNAGG	2 cut(s)	540, 1637
BalI	TGGCCA	2 cut(s)	2664, 2765
BamHI	GGATCC	1 cut(s)	1495
BanI	GGYRCC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	2735, 2767
BbsI	GAAGAC	1 cut(s)	1938
Bbv12I	GWGCWC	1 cut(s)	1015
BbvI	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2257, 2267, 2390, 2555
BccI	CCATC	8 cut(s)	596, 812, 1046, 1060, 1235, 1272, 1507, 2764
BceAI	ACGGC	1 cut(s)	7
BcgI	CGANNNNNNTGC	4 cut(s)	1158, 1192, 1841, 1875
BciT130I	CCWGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
BcuI	ACTAGT	2 cut(s)	457, 653
BfaI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1950
BfmI	CTRYAG	2 cut(s)	466, 1227
BfoI	RGCGCY	1 cut(s)	2210
BglI	GCCNNNNNGGC	1 cut(s)	2354
BglII	AGATCT	2 cut(s)	511, 2526
Bme1390I	CCNGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
Bme18I	GGWCC	2 cut(s)	1876, 2430
BmeT110I	CYCGRG	1 cut(s)	2118
BmgT120I	GGNCC	4 cut(s)	824, 1876, 2356, 2430
BmiI	GGNNCC	4 cut(s)	438, 1457, 1497, 2299
BmrFI	CCNGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	6 cut(s)	282, 435, 848, 1763, 1909, 2267
BmuI	ACTGGG	1 cut(s)	110
BoxI	GACNNNNGTC	1 cut(s)	2428
BpiI	GAAGAC	1 cut(s)	1938
BplI	GAGNNNNNCTC	4 cut(s)	2125, 2157, 2479, 2511
BpmI	CTGGAG	2 cut(s)	1788, 1856
BpuEI	CTTGAG	2 cut(s)	590, 783
BsaBI	GATNNNNATC	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	952, 1359, 2560
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 2616, 2646
Bsc4I	CCNNNNNNNGG	4 cut(s)	967, 1231, 2365, 2761
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	5 cut(s)	105, 192, 490, 1203, 1771
Bse21I	CCTNAGG	2 cut(s)	540, 1637
Bse3DI	GCAATG	7 cut(s)	40, 692, 1508, 1574, 1929, 2257, 2745
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
BseDI	CCNNGG	3 cut(s)	952, 1359, 2560
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	4 cut(s)	967, 1231, 2365, 2761
BseMI	GCAATG	7 cut(s)	40, 692, 1508, 1574, 1929, 2257, 2745
BseMII	CTCAG	4 cut(s)	107, 766, 1628, 2417
BseNI	ACTGG	5 cut(s)	105, 192, 490, 1203, 1771
BseRI	GAGGAG	7 cut(s)	1634, 1718, 2500, 2642, 2702, 2798, 2841
BseX3I	CGGCCG	1 cut(s)	2442
BseXI	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2257, 2267, 2390, 2555
BsgI	GTGCAG	4 cut(s)	191, 438, 2397, 2454
Bsh1285I	CGRYCG	1 cut(s)	2445
BshFI	GGCC	7 cut(s)	464, 695, 826, 2357, 2444, 2664, 2765
BshNI	GGYRCC	1 cut(s)	436
BshTI	ACCGGT	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	2445
BsiHKAI	GWGCWC	1 cut(s)	1015
BsiHKCI	CYCGRG	1 cut(s)	2118
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	131, 2548
BslI	CCNNNNNNNGG	4 cut(s)	967, 1231, 2365, 2761
BsmFI	GGGAC	2 cut(s)	131, 2548
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	7 cut(s)	464, 695, 826, 2357, 2444, 2664, 2765
BsoBI	CYCGRG	1 cut(s)	2118
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp1407I	TGTACA	1 cut(s)	1627
Bsp143I	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
BspACI	CCGC	3 cut(s)	65, 440, 1547
BspANI	GGCC	7 cut(s)	464, 695, 826, 2357, 2444, 2664, 2765
BspCNI	CTCAG	4 cut(s)	106, 765, 1629, 2418
BspLI	GGNNCC	4 cut(s)	438, 1457, 1497, 2299
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	5 cut(s)	1490, 1503, 1914, 2045, 2486
BspQI	GCTCTTC	2 cut(s)	12, 2728
BspT107I	GGYRCC	1 cut(s)	436
BsrDI	GCAATG	7 cut(s)	40, 692, 1508, 1574, 1929, 2257, 2745
BsrFI	RCCGGY	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	1627
BsrI	ACTGG	5 cut(s)	105, 192, 490, 1203, 1771
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	3 cut(s)	952, 1359, 2560
BssMI	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
Bst2UI	CCWGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
Bst4CI	ACNGT	6 cut(s)	504, 705, 1352, 1895, 2066, 2600
Bst6I	CTCTTC	3 cut(s)	12, 2148, 2728
BstAPI	GCANNNNNTGC	1 cut(s)	2416
BstAUI	TGTACA	1 cut(s)	1627
BstDSI	CCRYGG	1 cut(s)	2560
BstEII	GGTNACC	1 cut(s)	1829
BstH2I	RGCGCY	1 cut(s)	2210
BstHHI	GCGC	3 cut(s)	1095, 2209, 2250
BstKTI	GATC	8 cut(s)	373, 514, 1133, 1498, 1909, 2053, 2494, 2529
BstMBI	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
BstMCI	CGRYCG	1 cut(s)	2445
BstNI	CCWGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
BstNSI	RCATGY	2 cut(s)	270, 1904
BstPAI	GACNNNNGTC	1 cut(s)	2428
BstPI	GGTNACC	1 cut(s)	1829
BstSCI	CCNGG	7 cut(s)	930, 952, 960, 1359, 1513, 1833, 2348
BstSFI	CTRYAG	2 cut(s)	466, 1227
BstV1I	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2257, 2267, 2390, 2555
BstV2I	GAAGAC	1 cut(s)	1938
BstX2I	RGATCY	3 cut(s)	511, 1495, 2526
BstXI	CCANNNNNNTGG	2 cut(s)	2531, 2672
BstYI	RGATCY	3 cut(s)	511, 1495, 2526
BstZI	CGGCCG	1 cut(s)	2442
Bsu36I	CCTNAGG	2 cut(s)	540, 1637
BsuRI	GGCC	7 cut(s)	464, 695, 826, 2357, 2444, 2664, 2765
BtgI	CCRYGG	1 cut(s)	2560
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	4 cut(s)	225, 509, 1900, 2071
CaiI	CAGNNNCTG	2 cut(s)	100, 1636
CfoI	GCGC	3 cut(s)	1095, 2209, 2250
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	824, 1876, 2356, 2430
Csp6I	GTAC	6 cut(s)	147, 1220, 1340, 1628, 1941, 2361
CspAI	ACCGGT	1 cut(s)	7
CviQI	GTAC	6 cut(s)	147, 1220, 1340, 1628, 1941, 2361
DpnI	GATC	8 cut(s)	372, 513, 1132, 1497, 1908, 2052, 2493, 2528
DpnII	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
EaeI	YGGCCR	3 cut(s)	2442, 2662, 2763
EagI	CGGCCG	1 cut(s)	2442
Eam1104I	CTCTTC	3 cut(s)	12, 2148, 2728
EarI	CTCTTC	3 cut(s)	12, 2148, 2728
EclXI	CGGCCG	1 cut(s)	2442
Eco147I	AGGCCT	1 cut(s)	695
Eco32I	GATATC	2 cut(s)	1105, 2713
Eco47I	GGWCC	2 cut(s)	1876, 2430
Eco52I	CGGCCG	1 cut(s)	2442
Eco57I	CTGAAG	2 cut(s)	2129, 2553
Eco81I	CCTNAGG	2 cut(s)	540, 1637
Eco88I	CYCGRG	1 cut(s)	2118
Eco91I	GGTNACC	1 cut(s)	1829
EcoO65I	GGTNACC	1 cut(s)	1829
EcoRI	GAATTC	1 cut(s)	1855
EcoRII	CCWGG	7 cut(s)	930, 952, 960, 1359, 1513, 1833, 2348
EcoRV	GATATC	2 cut(s)	1105, 2713
EcoT22I	ATGCAT	1 cut(s)	450
FalI	AAGNNNNNCTT	8 cut(s)	513, 545, 910, 942, 2789, 2821, 2821, 2853
FaqI	GGGAC	2 cut(s)	131, 2548
FauNDI	CATATG	1 cut(s)	2701
FspBI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1950
GlaI	GCGC	3 cut(s)	1094, 2208, 2249
GsuI	CTGGAG	2 cut(s)	1788, 1856
HaeII	RGCGCY	1 cut(s)	2210
HaeIII	GGCC	7 cut(s)	464, 695, 826, 2357, 2444, 2664, 2765
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	3 cut(s)	1095, 2209, 2250
Hin6I	GCGC	3 cut(s)	1093, 2207, 2248
HinP1I	GCGC	3 cut(s)	1093, 2207, 2248
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	3 cut(s)	185, 608, 2744
HinfI	GANTC	9 cut(s)	119, 158, 901, 1118, 1259, 1592, 1661, 2449, 2825
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	79, 1770, 2606
Hpy166II	GTNNAC	7 cut(s)	473, 547, 659, 1876, 1891, 2087, 2138
Hpy8I	GTNNAC	7 cut(s)	473, 547, 659, 1876, 1891, 2087, 2138
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	64, 1797, 1906
HpyCH4III	ACNGT	6 cut(s)	504, 705, 1352, 1895, 2066, 2600
HpyCH4IV	ACGT	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	177
HspAI	GCGC	3 cut(s)	1093, 2207, 2248
Kzo9I	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
LguI	GCTCTTC	2 cut(s)	12, 2728
LmnI	GCTCC	4 cut(s)	572, 953, 1185, 1638
Lsp1109I	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2257, 2267, 2390, 2555
LweI	GCATC	6 cut(s)	282, 435, 848, 1763, 1909, 2267
MaeI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1950
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	5 cut(s)	75, 1762, 1829, 2305, 2594
MalI	GATC	8 cut(s)	372, 513, 1132, 1497, 1908, 2052, 2493, 2528
MboI	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	3 cut(s)	511, 1495, 2526
MhlI	GDGCHC	1 cut(s)	1015
MlsI	TGGCCA	2 cut(s)	2664, 2765
MluNI	TGGCCA	2 cut(s)	2664, 2765
MlyI	GAGTC	2 cut(s)	113, 2458
MmeI	TCCRAC	1 cut(s)	2457
Mox20I	TGGCCA	2 cut(s)	2664, 2765
Mph1103I	ATGCAT	1 cut(s)	450
MroXI	GAANNNNTTC	4 cut(s)	1957, 2142, 2464, 2577
MscI	TGGCCA	2 cut(s)	2664, 2765
MslI	CAYNNNNRTG	2 cut(s)	554, 1676
Msp20I	TGGCCA	2 cut(s)	2664, 2765
MspA1I	CMGCKG	4 cut(s)	65, 364, 442, 1274
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
NdeI	CATATG	1 cut(s)	2701
NdeII	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
NlaIV	GGNNCC	4 cut(s)	438, 1457, 1497, 2299
NmeAIII	GCCGAG	2 cut(s)	2420, 2470
NmuCI	GTSAC	2 cut(s)	2305, 2594
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	2 cut(s)	270, 1904
PaeR7I	CTCGAG	1 cut(s)	2118
PceI	AGGCCT	1 cut(s)	695
PciI	ACATGT	1 cut(s)	266
PciSI	GCTCTTC	2 cut(s)	12, 2728
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	4 cut(s)	1957, 2142, 2464, 2577
PfeI	GAWTC	7 cut(s)	158, 901, 1118, 1259, 1592, 1661, 2825
PinAI	ACCGGT	1 cut(s)	7
PleI	GAGTC	2 cut(s)	113, 2457
PpsI	GAGTC	2 cut(s)	113, 2457
PscI	ACATGT	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	2428
Psp6I	CCWGG	7 cut(s)	930, 952, 960, 1359, 1513, 1833, 2348
PspEI	GGTNACC	1 cut(s)	1829
PspGI	CCWGG	7 cut(s)	930, 952, 960, 1359, 1513, 1833, 2348
PspN4I	GGNNCC	4 cut(s)	438, 1457, 1497, 2299
PspPI	GGNCC	4 cut(s)	824, 1876, 2356, 2430
PstI	CTGCAG	1 cut(s)	470
PstNI	CAGNNNCTG	2 cut(s)	100, 1636
PsuI	RGATCY	3 cut(s)	511, 1495, 2526
PvuII	CAGCTG	2 cut(s)	364, 1274
RsaI	GTAC	6 cut(s)	148, 1221, 1341, 1629, 1942, 2362
RsaNI	GTAC	6 cut(s)	147, 1220, 1340, 1628, 1941, 2361
RseI	CAYNNNNRTG	2 cut(s)	554, 1676
SapI	GCTCTTC	2 cut(s)	12, 2728
Sau3AI	GATC	8 cut(s)	370, 511, 1130, 1495, 1906, 2050, 2491, 2526
Sau96I	GGNCC	4 cut(s)	824, 1876, 2356, 2430
SchI	GAGTC	2 cut(s)	113, 2458
ScrFI	CCNGG	7 cut(s)	932, 954, 962, 1361, 1515, 1835, 2350
SduI	GDGCHC	1 cut(s)	1015
SfaNI	GCATC	6 cut(s)	282, 435, 848, 1763, 1909, 2267
SfcI	CTRYAG	2 cut(s)	466, 1227
Sfr274I	CTCGAG	1 cut(s)	2118
SinI	GGWCC	2 cut(s)	1876, 2430
SlaI	CTCGAG	1 cut(s)	2118
SmiMI	CAYNNNNRTG	2 cut(s)	554, 1676
SmlI	CTYRAG	3 cut(s)	605, 798, 2118
SmoI	CTYRAG	3 cut(s)	605, 798, 2118
SpeI	ACTAGT	2 cut(s)	457, 653
SseBI	AGGCCT	1 cut(s)	695
SsiI	CCGC	3 cut(s)	65, 440, 1547
SspI	AATATT	2 cut(s)	1173, 1715
SspMI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1950
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	7 cut(s)	930, 952, 960, 1359, 1513, 1833, 2348
TaaI	ACNGT	6 cut(s)	504, 705, 1352, 1895, 2066, 2600
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	6 cut(s)	310, 339, 1129, 1980, 2119, 2341
TatI	WGTACW	2 cut(s)	1219, 1627
TauI	GCSGC	1 cut(s)	1550
TfiI	GAWTC	7 cut(s)	158, 901, 1118, 1259, 1592, 1661, 2825
TscAI	CASTG	4 cut(s)	225, 509, 1900, 2071
TseFI	GTSAC	2 cut(s)	2305, 2594
TseI	GCWGC	9 cut(s)	364, 563, 857, 957, 1040, 2245, 2255, 2378, 2543
Tsp45I	GTSAC	2 cut(s)	2305, 2594
TspGWI	ACGGA	3 cut(s)	1943, 2188, 2637
TspRI	CASTG	4 cut(s)	225, 509, 1900, 2071
VpaK11BI	GGWCC	2 cut(s)	1876, 2430
XapI	RAATTY	9 cut(s)	127, 646, 1193, 1331, 1518, 1724, 1855, 2069, 2573
XceI	RCATGY	2 cut(s)	270, 1904
XhoI	CTCGAG	1 cut(s)	2118
XmnI	GAANNNNTTC	4 cut(s)	1957, 2142, 2464, 2577
XspI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1950
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.