Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Reverse (-)

53914247 .. 53920808

Gene Structure 6562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2874 bp

ATGTTTGGTAGAATGAAACCGGTTAAAGAAGAGCCGTCGTCATGCAATGCTTCACAAGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAATTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGGAATCAAGTCTAAAGATTGACGTTGAAAAGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGATACTTAACATGTGGCATCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTGTCAGAACAGCTGCTTGATCTGGTGTTCTATATCCTCATTGTTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACCGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTAATGTTTCCATCATGTTTCTCAACCTCAAGCTTTCATCTCAACATACCGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCATTCTCTCTGCCAGCAATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTACTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTGGCTCAAGCCATCTTGAAGCTAAACATTGGGCCTCATTTTGTAGCATCTGCTAGAATTGTGGCTGCTGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGCATATCTTACCTGGATGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGAACCCAGATGTTTTGCTGCTTGTTCTGATGGAAGTTATCCGATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATTACAATACATTTTACTAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGAATTTTTATCCAGTTGGTGTTCATCTGTACTCCCTGTAAAGGAAGAAGATGGCACTATTGAGTATGATTCCTTTGCAACAGCTGGATGGGTTTTGGATGTAGTTTCATCTATTGAACTGCATAATGCACGAAGTTTAGAATTTTCTGTACCTCGCAACAGTATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAACCTCCATTGTTTCATTCCCACTATCTGTGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCCTTTGCTTCTGATACTCTGAAAGCGGCAACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCCGAATCTCTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGAGAAGAAATGCGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACCTGGAGGAAATAAAGTCCGAGAATTCTGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATGTGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCTTCTGGACGATTTACAGCAATCGACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGTGAAACAAGAGGTAAAAATGCTGTTGATCCAATGGGAAACAGTGAATTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCAGCATCACTACAATCATGGGCTGATAAATTAAGTTCTTATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGCTGAACAATCGAAAAGCCAGGCTGGCCCGTACAAAGGATGTTCGTGCAGCACCAGAGTTCAATGCACTACCAGATAAGCAAGGTGTGCAAGGACTGAGGTCCAACAACTCGGCCGAGAGTCCTATTGGAAATGCTTCTGCACAACTAAATGTGAGGAGTGATCCTCAAATGAAGCTGAATAGTAGTGTAGTCCAGATCTCTGGGACAAAAGCAGCAGAAGCTATTGCCCGTGGTGCTTCAGAATTTGTTCCATGCAAGCAAGGTGACTGTGTTTTGCTTAAATATAATAACGGAGAGGAGGTTGGCATGGGAAAGGTGTTTCAGGCAAGTGGCCAATGGTTTGGGAGGAACTTGGAGGAGTTGAGGGCATATGTTGTGGATATCAAAGAGCTTAAAGTTAGAAGAGCAATGAAGCTTCCATACCCATCTATGGCCACAGGTGGTTCATTTGAGGAGGCTGAAACAAAGATTGGCTTAATGAGAGTGTTATGGGATTCAAGCAAGACTTTCAAATTGCCTCCTCTAAGGTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

957

Amino Acids

106.19

Weight (kDa)

5.67

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	19 - 536	1.4e-261	Nodulin N-terminal domain
HTH_NDX	PF24426	732 - 792	2.3e-34	NDX Homeobox-like domain
Nodulin_C	PF24679	862 - 947	9.4e-36	Nodulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	3 cut(s)	77, 452, 1559
AclWI	GGATC	5 cut(s)	1502, 1515, 1920, 2051, 2492
AcoI	YGGCCR	3 cut(s)	2448, 2668, 2769
AcsI	RAATTY	9 cut(s)	139, 658, 1205, 1343, 1530, 1730, 1861, 2075, 2579
AcuI	CTGAAG	2 cut(s)	2135, 2559
AfaI	GTAC	6 cut(s)	160, 1233, 1353, 1641, 1948, 2368
AfiI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
AflIII	ACRYGT	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	19
AhlI	ACTAGT	2 cut(s)	469, 665
AjnI	CCWGG	7 cut(s)	942, 964, 972, 1371, 1525, 1839, 2354
AjuI	GAANNNNNNNTTGG	2 cut(s)	2790, 2822
Alw21I	GWGCWC	1 cut(s)	1027
AlwI	GGATC	5 cut(s)	1502, 1515, 1920, 2051, 2492
AlwNI	CAGNNNCTG	2 cut(s)	112, 1648
Ama87I	CYCGRG	1 cut(s)	2124
AoxI	GGCC	7 cut(s)	474, 705, 836, 2361, 2448, 2668, 2769
ApeKI	GCWGC	9 cut(s)	376, 575, 869, 969, 1052, 2251, 2261, 2384, 2549
ApoI	RAATTY	9 cut(s)	139, 658, 1205, 1343, 1530, 1730, 1861, 2075, 2579
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	4 cut(s)	1963, 2148, 2470, 2583
AspLEI	GCGC	3 cut(s)	1107, 2215, 2256
AspS9I	GGNCC	4 cut(s)	836, 1882, 2362, 2436
AsuHPI	GGTGA	3 cut(s)	91, 1776, 2612
AvaI	CYCGRG	1 cut(s)	2124
AvaII	GGWCC	2 cut(s)	1882, 2436
AxyI	CCTNAGG	2 cut(s)	552, 1649
BalI	TGGCCA	2 cut(s)	2670, 2771
BamHI	GGATCC	1 cut(s)	1507
BanI	GGYRCC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	2741, 2773
BbsI	GAAGAC	1 cut(s)	1944
Bbv12I	GWGCWC	1 cut(s)	1027
BbvI	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2396, 2561
BccI	CCATC	8 cut(s)	608, 824, 1058, 1072, 1247, 1284, 1519, 2770
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	4 cut(s)	1170, 1204, 1847, 1881
BciT130I	CCWGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
BcuI	ACTAGT	2 cut(s)	469, 665
BfaI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	2216
BglI	GCCNNNNNGGC	1 cut(s)	2360
BglII	AGATCT	2 cut(s)	523, 2532
Bme1390I	CCNGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
Bme18I	GGWCC	2 cut(s)	1882, 2436
BmeT110I	CYCGRG	1 cut(s)	2124
BmgT120I	GGNCC	4 cut(s)	836, 1882, 2362, 2436
BmiI	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
BmrFI	CCNGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	294, 447, 860, 1769, 1915, 2273
BmuI	ACTGGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	2434
BpiI	GAAGAC	1 cut(s)	1944
BplI	GAGNNNNNCTC	4 cut(s)	2131, 2163, 2485, 2517
BpmI	CTGGAG	2 cut(s)	1794, 1862
BpuEI	CTTGAG	2 cut(s)	602, 795
BsaBI	GATNNNNATC	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	964, 1371, 2566
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	4 cut(s)	705, 735, 2622, 2652
Bsc4I	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
Bse21I	CCTNAGG	2 cut(s)	552, 1649
Bse3DI	GCAATG	7 cut(s)	52, 704, 1520, 1586, 1935, 2263, 2751
Bse8I	GATNNNNATC	1 cut(s)	505
BseBI	CCWGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
BseDI	CCNNGG	3 cut(s)	964, 1371, 2566
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
BseMI	GCAATG	7 cut(s)	52, 704, 1520, 1586, 1935, 2263, 2751
BseMII	CTCAG	4 cut(s)	119, 778, 1640, 2423
BseNI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
BseRI	GAGGAG	8 cut(s)	1646, 1709, 1724, 2506, 2648, 2708, 2804, 2847
BseX3I	CGGCCG	1 cut(s)	2448
BseXI	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2396, 2561
BsgI	GTGCAG	4 cut(s)	203, 450, 2403, 2460
Bsh1285I	CGRYCG	1 cut(s)	2451
BshFI	GGCC	7 cut(s)	476, 707, 838, 2363, 2450, 2670, 2771
BshNI	GGYRCC	1 cut(s)	448
BshTI	ACCGGT	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	2451
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	2124
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	143, 2554
BslI	CCNNNNNNNGG	4 cut(s)	979, 1243, 2371, 2767
BsmFI	GGGAC	2 cut(s)	143, 2554
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	7 cut(s)	476, 707, 838, 2363, 2450, 2670, 2771
BsoBI	CYCGRG	1 cut(s)	2124
Bsp1286I	GDGCHC	1 cut(s)	1027
Bsp1407I	TGTACA	1 cut(s)	1639
Bsp143I	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
BspACI	CCGC	3 cut(s)	77, 452, 1559
BspANI	GGCC	7 cut(s)	476, 707, 838, 2363, 2450, 2670, 2771
BspCNI	CTCAG	4 cut(s)	118, 777, 1641, 2424
BspLI	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	5 cut(s)	1502, 1515, 1920, 2051, 2492
BspQI	GCTCTTC	2 cut(s)	24, 2734
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	7 cut(s)	52, 704, 1520, 1586, 1935, 2263, 2751
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	1639
BsrI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	964, 1371, 2566
BssMI	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
Bst2UI	CCWGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
Bst4CI	ACNGT	6 cut(s)	516, 717, 1364, 1901, 2072, 2606
Bst6I	CTCTTC	3 cut(s)	24, 2154, 2734
BstAPI	GCANNNNNTGC	1 cut(s)	2422
BstAUI	TGTACA	1 cut(s)	1639
BstDSI	CCRYGG	1 cut(s)	2566
BstEII	GGTNACC	1 cut(s)	1835
BstH2I	RGCGCY	1 cut(s)	2216
BstHHI	GCGC	3 cut(s)	1107, 2215, 2256
BstKTI	GATC	8 cut(s)	385, 526, 1145, 1510, 1915, 2059, 2500, 2535
BstMBI	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
BstMCI	CGRYCG	1 cut(s)	2451
BstNI	CCWGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
BstNSI	RCATGY	2 cut(s)	282, 1910
BstPAI	GACNNNNGTC	1 cut(s)	2434
BstPI	GGTNACC	1 cut(s)	1835
BstSCI	CCNGG	7 cut(s)	942, 964, 972, 1371, 1525, 1839, 2354
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2396, 2561
BstV2I	GAAGAC	1 cut(s)	1944
BstX2I	RGATCY	3 cut(s)	523, 1507, 2532
BstXI	CCANNNNNNTGG	2 cut(s)	2537, 2678
BstYI	RGATCY	3 cut(s)	523, 1507, 2532
BstZI	CGGCCG	1 cut(s)	2448
Bsu36I	CCTNAGG	2 cut(s)	552, 1649
BsuRI	GGCC	7 cut(s)	476, 707, 838, 2363, 2450, 2670, 2771
BtgI	CCRYGG	1 cut(s)	2566
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	237, 521, 1906, 2077
CaiI	CAGNNNCTG	2 cut(s)	112, 1648
CfoI	GCGC	3 cut(s)	1107, 2215, 2256
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	4 cut(s)	836, 1882, 2362, 2436
Csp6I	GTAC	6 cut(s)	159, 1232, 1352, 1640, 1947, 2367
CspAI	ACCGGT	1 cut(s)	19
CviQI	GTAC	6 cut(s)	159, 1232, 1352, 1640, 1947, 2367
DpnI	GATC	8 cut(s)	384, 525, 1144, 1509, 1914, 2058, 2499, 2534
DpnII	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
EaeI	YGGCCR	3 cut(s)	2448, 2668, 2769
EagI	CGGCCG	1 cut(s)	2448
Eam1104I	CTCTTC	3 cut(s)	24, 2154, 2734
EarI	CTCTTC	3 cut(s)	24, 2154, 2734
EclXI	CGGCCG	1 cut(s)	2448
Eco147I	AGGCCT	1 cut(s)	707
Eco32I	GATATC	2 cut(s)	1117, 2719
Eco47I	GGWCC	2 cut(s)	1882, 2436
Eco52I	CGGCCG	1 cut(s)	2448
Eco57I	CTGAAG	2 cut(s)	2135, 2559
Eco81I	CCTNAGG	2 cut(s)	552, 1649
Eco88I	CYCGRG	1 cut(s)	2124
Eco91I	GGTNACC	1 cut(s)	1835
EcoO65I	GGTNACC	1 cut(s)	1835
EcoRI	GAATTC	1 cut(s)	1861
EcoRII	CCWGG	7 cut(s)	942, 964, 972, 1371, 1525, 1839, 2354
EcoRV	GATATC	2 cut(s)	1117, 2719
EcoT22I	ATGCAT	1 cut(s)	462
FalI	AAGNNNNNCTT	8 cut(s)	525, 557, 922, 954, 2795, 2827, 2827, 2859
FaqI	GGGAC	2 cut(s)	143, 2554
FauNDI	CATATG	1 cut(s)	2707
FspBI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
GlaI	GCGC	3 cut(s)	1106, 2214, 2255
GsuI	CTGGAG	2 cut(s)	1794, 1862
HaeII	RGCGCY	1 cut(s)	2216
HaeIII	GGCC	7 cut(s)	476, 707, 838, 2363, 2450, 2670, 2771
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	3 cut(s)	1107, 2215, 2256
Hin6I	GCGC	3 cut(s)	1105, 2213, 2254
HinP1I	GCGC	3 cut(s)	1105, 2213, 2254
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	3 cut(s)	197, 620, 2750
HinfI	GANTC	9 cut(s)	131, 170, 913, 1130, 1271, 1604, 1673, 2455, 2831
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	91, 1776, 2612
Hpy166II	GTNNAC	7 cut(s)	485, 559, 671, 1882, 1897, 2093, 2144
Hpy8I	GTNNAC	7 cut(s)	485, 559, 671, 1882, 1897, 2093, 2144
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	76, 1803, 1912
HpyCH4III	ACNGT	6 cut(s)	516, 717, 1364, 1901, 2072, 2606
HpyCH4IV	ACGT	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	3 cut(s)	1105, 2213, 2254
Kzo9I	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
LguI	GCTCTTC	2 cut(s)	24, 2734
LmnI	GCTCC	4 cut(s)	584, 965, 1197, 1650
Lsp1109I	GCAGC	9 cut(s)	363, 587, 856, 981, 1039, 2263, 2273, 2396, 2561
LweI	GCATC	6 cut(s)	294, 447, 860, 1769, 1915, 2273
MaeI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	5 cut(s)	87, 1768, 1835, 2311, 2600
MalI	GATC	8 cut(s)	384, 525, 1144, 1509, 1914, 2058, 2499, 2534
MboI	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	3 cut(s)	523, 1507, 2532
MhlI	GDGCHC	1 cut(s)	1027
MlsI	TGGCCA	2 cut(s)	2670, 2771
MluNI	TGGCCA	2 cut(s)	2670, 2771
MlyI	GAGTC	2 cut(s)	125, 2464
MmeI	TCCRAC	1 cut(s)	2463
Mox20I	TGGCCA	2 cut(s)	2670, 2771
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	4 cut(s)	1963, 2148, 2470, 2583
MscI	TGGCCA	2 cut(s)	2670, 2771
MslI	CAYNNNNRTG	2 cut(s)	566, 1688
Msp20I	TGGCCA	2 cut(s)	2670, 2771
MspA1I	CMGCKG	4 cut(s)	77, 376, 454, 1286
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
NdeI	CATATG	1 cut(s)	2707
NdeII	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
NlaIV	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
NmeAIII	GCCGAG	2 cut(s)	2426, 2476
NmuCI	GTSAC	2 cut(s)	2311, 2600
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	2 cut(s)	282, 1910
PaeR7I	CTCGAG	1 cut(s)	2124
PceI	AGGCCT	1 cut(s)	707
PciI	ACATGT	1 cut(s)	278
PciSI	GCTCTTC	2 cut(s)	24, 2734
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	4 cut(s)	1963, 2148, 2470, 2583
PfeI	GAWTC	7 cut(s)	170, 913, 1130, 1271, 1604, 1673, 2831
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	2 cut(s)	125, 2463
PpsI	GAGTC	2 cut(s)	125, 2463
PscI	ACATGT	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	2434
Psp6I	CCWGG	7 cut(s)	942, 964, 972, 1371, 1525, 1839, 2354
PspEI	GGTNACC	1 cut(s)	1835
PspGI	CCWGG	7 cut(s)	942, 964, 972, 1371, 1525, 1839, 2354
PspN4I	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
PspPI	GGNCC	4 cut(s)	836, 1882, 2362, 2436
PstI	CTGCAG	1 cut(s)	482
PstNI	CAGNNNCTG	2 cut(s)	112, 1648
PsuI	RGATCY	3 cut(s)	523, 1507, 2532
PvuII	CAGCTG	2 cut(s)	376, 1286
RsaI	GTAC	6 cut(s)	160, 1233, 1353, 1641, 1948, 2368
RsaNI	GTAC	6 cut(s)	159, 1232, 1352, 1640, 1947, 2367
RseI	CAYNNNNRTG	2 cut(s)	566, 1688
SapI	GCTCTTC	2 cut(s)	24, 2734
Sau3AI	GATC	8 cut(s)	382, 523, 1142, 1507, 1912, 2056, 2497, 2532
Sau96I	GGNCC	4 cut(s)	836, 1882, 2362, 2436
SchI	GAGTC	2 cut(s)	125, 2464
ScrFI	CCNGG	7 cut(s)	944, 966, 974, 1373, 1527, 1841, 2356
SduI	GDGCHC	1 cut(s)	1027
SfaNI	GCATC	6 cut(s)	294, 447, 860, 1769, 1915, 2273
SfcI	CTRYAG	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	2124
SinI	GGWCC	2 cut(s)	1882, 2436
SlaI	CTCGAG	1 cut(s)	2124
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1688
SmlI	CTYRAG	3 cut(s)	617, 810, 2124
SmoI	CTYRAG	3 cut(s)	617, 810, 2124
SpeI	ACTAGT	2 cut(s)	469, 665
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	3 cut(s)	77, 452, 1559
SspI	AATATT	2 cut(s)	1185, 1721
SspMI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	7 cut(s)	942, 964, 972, 1371, 1525, 1839, 2354
TaaI	ACNGT	6 cut(s)	516, 717, 1364, 1901, 2072, 2606
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	6 cut(s)	322, 351, 1141, 1986, 2125, 2347
TatI	WGTACW	2 cut(s)	1231, 1639
TauI	GCSGC	1 cut(s)	1562
TfiI	GAWTC	7 cut(s)	170, 913, 1130, 1271, 1604, 1673, 2831
TscAI	CASTG	4 cut(s)	237, 521, 1906, 2077
TseFI	GTSAC	2 cut(s)	2311, 2600
TseI	GCWGC	9 cut(s)	376, 575, 869, 969, 1052, 2251, 2261, 2384, 2549
Tsp45I	GTSAC	2 cut(s)	2311, 2600
TspGWI	ACGGA	3 cut(s)	1949, 2194, 2643
TspRI	CASTG	4 cut(s)	237, 521, 1906, 2077
VpaK11BI	GGWCC	2 cut(s)	1882, 2436
XapI	RAATTY	9 cut(s)	139, 658, 1205, 1343, 1530, 1730, 1861, 2075, 2579
XceI	RCATGY	2 cut(s)	282, 1910
XhoI	CTCGAG	1 cut(s)	2124
XmnI	GAANNNNTTC	4 cut(s)	1963, 2148, 2470, 2583
XspI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.