Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Reverse (-)

54240168 .. 54247777

Gene Structure 7610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGTTTGGTAGAATGAAACCGGTTAAAGAAGAGCCGTCGTCATGCAATGCTTCACAAGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAACTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGCAATCAAGTCTAAAGATTGACGTTGAAAAGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGATACTTAACATGTGGCATCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTTTCAGAACAGCTGCTTGACCTTGTGTTCTATATCCTCATTGTTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACCGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTAATGTTTCCATCAAGTTTCTCAACCTCAAGCTTTCATCTCAACATACTGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCATTCTCTCTGCCAGCAATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTACTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTGGCTCAAGCCATCTTGAAGCTAAACATTGTGCCTCATTTTGTAGCATCTGCTAGAATTGTGGCTGCTGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGTATATCTTACCTGGATGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGATCCCAGATGTTTTGCTGCTTGTTCTGATGGAAGTTATCCGATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATTACAATACATTTTACTAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGATTTTTTATCCAGTTGGTGTTCATCTGTACTCCCTGTAAAGGAAGAAGATGGCACTATTGAGTATGATTCCTTTGCAACAGCTGGATGGGTTTTGGATGTAGTTTCATCTATTGAACTGCATAATGCACGAAGTTTAGAATTTTCTGTACCTCGCAACAGTATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAATCTCCATTGTTTCATTCCCACTATCTGTGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCCTTTGCTTCTGATACTCTGAAAGCGGCAACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCTGAATCTCTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGAGAAGAAATGCGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACCTGGAGGAAATAAAGTCCGAGAATTCGGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATGTGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCATCTGGACGATTTACAGCAATCGACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGTGAAACAAGAGGTAAAAATGCTGTTGATCCAATGGGAAACAGTGAATTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCAGCATCACTACAATCATGGGCTGATAAATTAAGTTCTCATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGTCAGAATCCTTATATTTTCCTGCACTCTTCATTTTCTTTTGCCGTTGTAAATTCAAGATGAGTGAACATGTGTTCTTGGGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

807

Amino Acids

90.01

Weight (kDa)

5.43

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	19 - 536	4.4e-262	Nodulin N-terminal domain
HTH_NDX	PF24426	732 - 779	3.1e-25	NDX Homeobox-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	3 cut(s)	77, 452, 1559
AclWI	GGATC	5 cut(s)	1031, 1502, 1515, 1920, 2051
AcsI	RAATTY	8 cut(s)	139, 658, 1343, 1530, 1730, 1861, 2075, 2387
AcuI	CTGAAG	1 cut(s)	2135
AfaI	GTAC	5 cut(s)	160, 1233, 1353, 1641, 1948
AfiI	CCNNNNNNNGG	2 cut(s)	979, 1243
AflIII	ACRYGT	2 cut(s)	278, 2404
AgeI	ACCGGT	1 cut(s)	19
AhlI	ACTAGT	2 cut(s)	469, 665
AjnI	CCWGG	6 cut(s)	942, 964, 972, 1371, 1525, 1839
Alw21I	GWGCWC	1 cut(s)	1027
AlwI	GGATC	5 cut(s)	1031, 1502, 1515, 1920, 2051
AlwNI	CAGNNNCTG	2 cut(s)	112, 1648
Ama87I	CYCGRG	1 cut(s)	2124
AoxI	GGCC	2 cut(s)	474, 705
ApeKI	GCWGC	7 cut(s)	376, 575, 869, 969, 1052, 2251, 2261
ApoI	RAATTY	8 cut(s)	139, 658, 1343, 1530, 1730, 1861, 2075, 2387
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	2148
AspLEI	GCGC	3 cut(s)	1107, 2215, 2256
AspS9I	GGNCC	1 cut(s)	1882
AsuHPI	GGTGA	2 cut(s)	91, 1776
AvaI	CYCGRG	1 cut(s)	2124
AvaII	GGWCC	1 cut(s)	1882
AxyI	CCTNAGG	2 cut(s)	552, 1649
BamHI	GGATCC	1 cut(s)	1507
BanI	GGYRCC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	1944
Bbv12I	GWGCWC	1 cut(s)	1027
BbvI	GCAGC	7 cut(s)	363, 587, 856, 981, 1039, 2263, 2273
BccI	CCATC	7 cut(s)	608, 824, 1058, 1072, 1247, 1284, 1519
BceAI	ACGGC	2 cut(s)	19, 2364
BcgI	CGANNNNNNTGC	2 cut(s)	1170, 1204
BciT130I	CCWGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
BcuI	ACTAGT	2 cut(s)	469, 665
BfaI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	2216
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	8 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262
BlsI	GCNGC	8 cut(s)	378, 577, 871, 971, 1054, 1561, 2253, 2263
Bme1390I	CCNGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
Bme18I	GGWCC	1 cut(s)	1882
BmeT110I	CYCGRG	1 cut(s)	2124
BmgT120I	GGNCC	1 cut(s)	1882
BmiI	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
BmrFI	CCNGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	7 cut(s)	294, 447, 860, 1769, 1915, 1973, 2273
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	1944
BplI	GAGNNNNNCTC	2 cut(s)	2131, 2163
BpmI	CTGGAG	2 cut(s)	1794, 1862
BpuEI	CTTGAG	2 cut(s)	602, 795
BsaBI	GATNNNNATC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	964, 1371
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	979, 1243
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
Bse21I	CCTNAGG	2 cut(s)	552, 1649
Bse3DI	GCAATG	6 cut(s)	52, 704, 1520, 1586, 1935, 2263
Bse8I	GATNNNNATC	1 cut(s)	505
BseBI	CCWGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
BseDI	CCNNGG	2 cut(s)	964, 1371
BseGI	GGATG	9 cut(s)	506, 547, 952, 1295, 1306, 1642, 1784, 1927, 2137
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	979, 1243
BseMI	GCAATG	6 cut(s)	52, 704, 1520, 1586, 1935, 2263
BseMII	CTCAG	3 cut(s)	119, 778, 1640
BseNI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
BseRI	GAGGAG	3 cut(s)	1646, 1709, 1724
BseXI	GCAGC	7 cut(s)	363, 587, 856, 981, 1039, 2263, 2273
BsgI	GTGCAG	3 cut(s)	203, 450, 2343
BshFI	GGCC	2 cut(s)	476, 707
BshNI	GGYRCC	1 cut(s)	448
BshTI	ACCGGT	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	2124
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	979, 1243
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	476, 707
BsoBI	CYCGRG	1 cut(s)	2124
Bsp1286I	GDGCHC	1 cut(s)	1027
Bsp1407I	TGTACA	1 cut(s)	1639
Bsp143I	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
BspACI	CCGC	3 cut(s)	77, 452, 1559
BspANI	GGCC	2 cut(s)	476, 707
BspCNI	CTCAG	3 cut(s)	118, 777, 1641
BspLI	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	5 cut(s)	1031, 1502, 1515, 1920, 2051
BspQI	GCTCTTC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	6 cut(s)	52, 704, 1520, 1586, 1935, 2263
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	1639
BsrI	ACTGG	5 cut(s)	117, 204, 502, 1215, 1777
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	964, 1371
BssMI	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
Bst2UI	CCWGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
Bst4CI	ACNGT	5 cut(s)	516, 717, 1364, 1901, 2072
Bst6I	CTCTTC	3 cut(s)	24, 2154, 2369
BstAUI	TGTACA	1 cut(s)	1639
BstC8I	GCNNGC	8 cut(s)	201, 478, 543, 695, 737, 958, 1086, 1499
BstDEI	CTNAG	8 cut(s)	67, 105, 552, 764, 1592, 1649, 1662, 1814
BstEII	GGTNACC	1 cut(s)	1835
BstF5I	GGATG	9 cut(s)	506, 547, 952, 1295, 1306, 1642, 1784, 1927, 2137
BstH2I	RGCGCY	1 cut(s)	2216
BstHHI	GCGC	3 cut(s)	1107, 2215, 2256
BstKTI	GATC	6 cut(s)	526, 1039, 1145, 1510, 1915, 2059
BstMBI	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 473, 584, 736, 966, 1382, 1961
BstNI	CCWGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
BstNSI	RCATGY	3 cut(s)	282, 1910, 2408
BstPI	GGTNACC	1 cut(s)	1835
BstSCI	CCNGG	6 cut(s)	942, 964, 972, 1371, 1525, 1839
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	7 cut(s)	363, 587, 856, 981, 1039, 2263, 2273
BstV2I	GAAGAC	1 cut(s)	1944
BstX2I	RGATCY	3 cut(s)	523, 1036, 1507
BstYI	RGATCY	3 cut(s)	523, 1036, 1507
Bsu36I	CCTNAGG	2 cut(s)	552, 1649
BsuRI	GGCC	2 cut(s)	476, 707
BtsCI	GGATG	9 cut(s)	506, 547, 952, 1295, 1306, 1642, 1784, 1927, 2137
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	237, 521, 1906, 2077
Cac8I	GCNNGC	8 cut(s)	201, 478, 543, 695, 737, 958, 1086, 1499
CaiI	CAGNNNCTG	2 cut(s)	112, 1648
CfoI	GCGC	3 cut(s)	1107, 2215, 2256
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	1882
Csp6I	GTAC	5 cut(s)	159, 1232, 1352, 1640, 1947
CspAI	ACCGGT	1 cut(s)	19
CviQI	GTAC	5 cut(s)	159, 1232, 1352, 1640, 1947
DdeI	CTNAG	8 cut(s)	67, 105, 552, 764, 1592, 1649, 1662, 1814
DpnI	GATC	6 cut(s)	525, 1038, 1144, 1509, 1914, 2058
DpnII	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
Eam1104I	CTCTTC	3 cut(s)	24, 2154, 2369
EarI	CTCTTC	3 cut(s)	24, 2154, 2369
Eco147I	AGGCCT	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	1882
Eco57I	CTGAAG	1 cut(s)	2135
Eco81I	CCTNAGG	2 cut(s)	552, 1649
Eco88I	CYCGRG	1 cut(s)	2124
Eco91I	GGTNACC	1 cut(s)	1835
EcoO65I	GGTNACC	1 cut(s)	1835
EcoRI	GAATTC	1 cut(s)	1861
EcoRII	CCWGG	6 cut(s)	942, 964, 972, 1371, 1525, 1839
EcoRV	GATATC	1 cut(s)	1117
EcoT22I	ATGCAT	1 cut(s)	462
FalI	AAGNNNNNCTT	4 cut(s)	525, 557, 922, 954
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	8 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262
FokI	GGATG	9 cut(s)	513, 534, 959, 1302, 1313, 1649, 1791, 1934, 2144
Fsp4HI	GCNGC	8 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262
FspBI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
GlaI	GCGC	3 cut(s)	1106, 2214, 2255
GluI	GCNGC	8 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262
GsuI	CTGGAG	2 cut(s)	1794, 1862
HaeII	RGCGCY	1 cut(s)	2216
HaeIII	GGCC	2 cut(s)	476, 707
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	3 cut(s)	1107, 2215, 2256
Hin6I	GCGC	3 cut(s)	1105, 2213, 2254
HinP1I	GCGC	3 cut(s)	1105, 2213, 2254
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	197, 620
HinfI	GANTC	7 cut(s)	131, 913, 1130, 1271, 1604, 1673, 2342
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	91, 1776
Hpy166II	GTNNAC	8 cut(s)	485, 559, 671, 1882, 1897, 2093, 2144, 2402
Hpy8I	GTNNAC	8 cut(s)	485, 559, 671, 1882, 1897, 2093, 2144, 2402
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	76, 1803, 1912
HpyCH4III	ACNGT	5 cut(s)	516, 717, 1364, 1901, 2072
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 473, 584, 736, 966, 1382, 1961
HpyF3I	CTNAG	8 cut(s)	67, 105, 552, 764, 1592, 1649, 1662, 1814
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	3 cut(s)	1105, 2213, 2254
Kzo9I	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	4 cut(s)	584, 965, 1197, 1650
Lsp1109I	GCAGC	7 cut(s)	363, 587, 856, 981, 1039, 2263, 2273
LweI	GCATC	7 cut(s)	294, 447, 860, 1769, 1915, 1973, 2273
MaeI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	4 cut(s)	87, 1768, 1835, 2311
MalI	GATC	6 cut(s)	525, 1038, 1144, 1509, 1914, 2058
MboI	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	3 cut(s)	523, 1036, 1507
MhlI	GDGCHC	1 cut(s)	1027
MlyI	GAGTC	1 cut(s)	125
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	2148
MseI	TTAA	7 cut(s)	24, 99, 275, 591, 1715, 2291, 2422
MslI	CAYNNNNRTG	2 cut(s)	566, 1688
MspA1I	CMGCKG	4 cut(s)	77, 376, 454, 1286
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
MwoI	GCNNNNNNNGC	7 cut(s)	56, 473, 584, 736, 966, 1382, 1961
NdeII	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
NlaIV	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
NmuCI	GTSAC	1 cut(s)	2311
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	3 cut(s)	282, 1910, 2408
PaeR7I	CTCGAG	1 cut(s)	2124
PceI	AGGCCT	1 cut(s)	707
PciI	ACATGT	2 cut(s)	278, 2404
PciSI	GCTCTTC	1 cut(s)	24
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	2148
PfeI	GAWTC	6 cut(s)	913, 1130, 1271, 1604, 1673, 2342
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	8 cut(s)	378, 577, 871, 971, 1054, 1561, 2253, 2263
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	2 cut(s)	278, 2404
Psp6I	CCWGG	6 cut(s)	942, 964, 972, 1371, 1525, 1839
PspEI	GGTNACC	1 cut(s)	1835
PspGI	CCWGG	6 cut(s)	942, 964, 972, 1371, 1525, 1839
PspN4I	GGNNCC	4 cut(s)	450, 1469, 1509, 2305
PspPI	GGNCC	1 cut(s)	1882
PstI	CTGCAG	1 cut(s)	482
PstNI	CAGNNNCTG	2 cut(s)	112, 1648
PsuI	RGATCY	3 cut(s)	523, 1036, 1507
PvuII	CAGCTG	2 cut(s)	376, 1286
RsaI	GTAC	5 cut(s)	160, 1233, 1353, 1641, 1948
RsaNI	GTAC	5 cut(s)	159, 1232, 1352, 1640, 1947
RseI	CAYNNNNRTG	2 cut(s)	566, 1688
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	7 cut(s)	24, 99, 275, 591, 1715, 2291, 2422
SatI	GCNGC	8 cut(s)	377, 576, 870, 970, 1053, 1560, 2252, 2262
Sau3AI	GATC	6 cut(s)	523, 1036, 1142, 1507, 1912, 2056
Sau96I	GGNCC	1 cut(s)	1882
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	6 cut(s)	944, 966, 974, 1373, 1527, 1841
SduI	GDGCHC	1 cut(s)	1027
SfaNI	GCATC	7 cut(s)	294, 447, 860, 1769, 1915, 1973, 2273
SfcI	CTRYAG	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	2124
SinI	GGWCC	1 cut(s)	1882
SlaI	CTCGAG	1 cut(s)	2124
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1688
SmlI	CTYRAG	3 cut(s)	617, 810, 2124
SmoI	CTYRAG	3 cut(s)	617, 810, 2124
SpeI	ACTAGT	2 cut(s)	469, 665
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	3 cut(s)	77, 452, 1559
SspI	AATATT	2 cut(s)	1185, 1721
SspMI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	6 cut(s)	942, 964, 972, 1371, 1525, 1839
TaaI	ACNGT	5 cut(s)	516, 717, 1364, 1901, 2072
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	322, 351, 1141, 1986, 2125
TatI	WGTACW	2 cut(s)	1231, 1639
TauI	GCSGC	1 cut(s)	1562
TfiI	GAWTC	6 cut(s)	913, 1130, 1271, 1604, 1673, 2342
Tru1I	TTAA	7 cut(s)	24, 99, 275, 591, 1715, 2291, 2422
Tru9I	TTAA	7 cut(s)	24, 99, 275, 591, 1715, 2291, 2422
TscAI	CASTG	4 cut(s)	237, 521, 1906, 2077
TseFI	GTSAC	1 cut(s)	2311
TseI	GCWGC	7 cut(s)	376, 575, 869, 969, 1052, 2251, 2261
Tsp45I	GTSAC	1 cut(s)	2311
TspGWI	ACGGA	2 cut(s)	1949, 2194
TspRI	CASTG	4 cut(s)	237, 521, 1906, 2077
VpaK11BI	GGWCC	1 cut(s)	1882
XapI	RAATTY	8 cut(s)	139, 658, 1343, 1530, 1730, 1861, 2075, 2387
XceI	RCATGY	3 cut(s)	282, 1910, 2408
XhoI	CTCGAG	1 cut(s)	2124
XmnI	GAANNNNTTC	1 cut(s)	2148
XspI	CTAG	6 cut(s)	470, 666, 858, 879, 1109, 1956
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.