Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Reverse (-)

57769131 .. 57776843

Gene Structure 7713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG346400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGAATAATGTCGTTTTTTTTTTCTTCCCATGTTTTGGTCATTTGTTCATTAGATGGCCAATTAGACTCTTCTTTCGACTTGAGTTTGTTAGCATGAATTACTTCAAGTTTGTTTGTACAAAACAGGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAACTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGGAATCAAGTCTAAAGATTGACGTTGAAAGGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGATACTTAACATGTGGCATCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTGTCAGAACAGCTGCTTGACCTGGTGTTCTATATCCTCATTGTTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACCGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTCATGTTTCCATCAAGTTTCTCAACCTCAAGCTTTCATCTCAACATACTGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCATTCTCTCTGCCAGCAATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTGCTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTTGCTCAAGCCATCTTGAAGCTAAACATTGCGCCTCATTTTGTAGCATCTGCTAGAATAGTGGCTGCTGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGCATATCTTACCTGGACGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGATCCCAGATGTTTTGCTGCTTGTTCTGATGGAAGTTATCCAATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATTACAATACATTTTACAAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGATTTTTTATCCAGTTGGTGTTCATCTGTACTCCCTGTAAAGGAAGAAGATGGCACTATTGAGTATGATTCCTTTGCAACAGCTGGATGGGTTTTGGATGTAGTTTCATCTATTGAACTGCATAATGCACGAAGTTTAGAATTTTCTGTAACTCGCAACAGTATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAACCTCCATTGTTTCATTCCCACTATCTGTGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCCTTTGCTTCTGATACTCTGAAAGCGGCAACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCCGAATCTCTAATTCCCAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGAGAAGAAATGCGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACTTGGAGGAAATAAAGTCCGAGAATTCTGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATATGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCATCTGGACGATTTACACCAATCAACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGCGAAACAAGAGGTAAAAATGCTGTTGATCCAATGGGAAACAGTGAATTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCAGCATCACTACAATCATGGGCTGATAAATTAAGTTCTCATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGCTGAACAATCGAAAAGCCAGGCTGGCCCGTACAAAGGATGTTCGTGCAGTACCAGAGTTCAATGCACTACCAGATAAGCAAGGTGTGCAAGGACTGAGGTCCAACAACTCAGCCGAGAGCCCTATTGGAAATGCTTCTGCACAACTAAATGTGAGGAGTGATCCTCAAATGAAGCTGAATAGTAGTGTAGTCCAGATCTCTGGGACAAAAGCAGCAGAAGCTATTGCCCGTGGTCCTTCAGAATTTGTTCCATGCAAGCAAGGTGACTGTGTTTTGCTTAAATATAATAACGGAGAGGAGGTTGGCATAGGAAAGGTGTTTCAGGCAAGTGGCCAATGGTTTGGGAGGAACTTGGAGGAGTTGAGGGCATATGTTGTGGATATCAAAGAGCTTAAAGTTAGAAGAGCAATGAAGCTTCCATACCCATCTATGGCCACAGGTGGTTCATTTGAGGAGGCTGAAACAAAGATTGGCTTAATGAGAGTGTTATGGGATTCAAGCAAGACTTTCAAATTGCCTCCTCTAAGGTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

980

Amino Acids

109.49

Weight (kDa)

6.01

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	42 - 559	9.3e-263	Nodulin N-terminal domain
HTH_NDX	PF24426	755 - 815	5.7e-35	NDX Homeobox-like domain
Nodulin_C	PF24679	885 - 970	1.7e-35	Nodulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccB7I	CCANNNNNTGG	1 cut(s)	35
AciI	CCGC	3 cut(s)	146, 521, 1628
AclWI	GGATC	6 cut(s)	1100, 1571, 1584, 1989, 2120, 2561
AcoI	YGGCCR	3 cut(s)	56, 2737, 2838
AcsI	RAATTY	8 cut(s)	208, 727, 1412, 1599, 1799, 1930, 2144, 2648
AcuI	CTGAAG	2 cut(s)	2204, 2628
AfaI	GTAC	7 cut(s)	118, 229, 1302, 1710, 2017, 2437, 2457
AfiI	CCNNNNNNNGG	5 cut(s)	35, 1048, 1312, 2440, 2836
AflIII	ACRYGT	1 cut(s)	347
AhlI	ACTAGT	2 cut(s)	538, 734
AjnI	CCWGG	7 cut(s)	453, 1011, 1033, 1041, 1440, 1594, 2423
AjuI	GAANNNNNNNTTGG	2 cut(s)	2859, 2891
Alw21I	GWGCWC	1 cut(s)	1096
AlwI	GGATC	6 cut(s)	1100, 1571, 1584, 1989, 2120, 2561
AlwNI	CAGNNNCTG	2 cut(s)	181, 1717
Ama87I	CYCGRG	1 cut(s)	2193
AoxI	GGCC	7 cut(s)	56, 126, 543, 774, 2430, 2737, 2838
ApeKI	GCWGC	8 cut(s)	445, 644, 938, 1038, 1121, 2320, 2330, 2618
ApoI	RAATTY	8 cut(s)	208, 727, 1412, 1599, 1799, 1930, 2144, 2648
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
Asp700I	GAANNNNTTC	4 cut(s)	101, 2217, 2539, 2652
AspLEI	GCGC	4 cut(s)	907, 1176, 2284, 2325
AspS9I	GGNCC	4 cut(s)	1951, 2431, 2505, 2639
AsuHPI	GGTGA	3 cut(s)	160, 1845, 2681
AvaI	CYCGRG	1 cut(s)	2193
AvaII	GGWCC	3 cut(s)	1951, 2505, 2639
AxyI	CCTNAGG	2 cut(s)	621, 1718
BalI	TGGCCA	3 cut(s)	58, 2739, 2840
BamHI	GGATCC	1 cut(s)	1576
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	2528
BarI	GAAGNNNNNNTAC	2 cut(s)	2810, 2842
BbsI	GAAGAC	1 cut(s)	2013
Bbv12I	GWGCWC	1 cut(s)	1096
BbvI	GCAGC	8 cut(s)	432, 656, 925, 1050, 1108, 2332, 2342, 2630
BccI	CCATC	8 cut(s)	48, 677, 893, 1127, 1316, 1353, 1588, 2839
BcgI	CGANNNNNNTGC	4 cut(s)	1239, 1273, 1916, 1950
BciT130I	CCWGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
BcuI	ACTAGT	2 cut(s)	538, 734
BfaI	CTAG	6 cut(s)	539, 735, 927, 948, 1178, 2025
BfmI	CTRYAG	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	2285
BglI	GCCNNNNNGGC	1 cut(s)	2429
BglII	AGATCT	2 cut(s)	592, 2601
BisI	GCNGC	9 cut(s)	446, 645, 939, 1039, 1122, 1629, 2321, 2331, 2619
BlsI	GCNGC	9 cut(s)	447, 646, 940, 1040, 1123, 1630, 2322, 2332, 2620
Bme1390I	CCNGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
Bme18I	GGWCC	3 cut(s)	1951, 2505, 2639
BmeT110I	CYCGRG	1 cut(s)	2193
BmgT120I	GGNCC	4 cut(s)	1951, 2431, 2505, 2639
BmiI	GGNNCC	4 cut(s)	519, 1538, 1578, 2374
BmrFI	CCNGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	7 cut(s)	363, 516, 929, 1838, 1984, 2042, 2342
BmuI	ACTGGG	1 cut(s)	191
BoxI	GACNNNNGTC	1 cut(s)	2503
BpiI	GAAGAC	1 cut(s)	2013
BplI	GAGNNNNNCTC	4 cut(s)	2200, 2232, 2554, 2586
BpmI	CTGGAG	1 cut(s)	1863
Bpu10I	CCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	3 cut(s)	101, 671, 864
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	3 cut(s)	1033, 1440, 2635
BsaXI	ACNNNNNCTCC	4 cut(s)	774, 804, 2691, 2721
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 1048, 1312, 2440, 2836
Bse1I	ACTGG	5 cut(s)	186, 273, 571, 1284, 1846
Bse21I	CCTNAGG	2 cut(s)	621, 1718
Bse3DI	GCAATG	7 cut(s)	773, 900, 1589, 1655, 2004, 2332, 2820
Bse8I	GATNNNNATC	1 cut(s)	574
BseBI	CCWGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
BseDI	CCNNGG	3 cut(s)	1033, 1440, 2635
BseGI	GGATG	9 cut(s)	575, 616, 1364, 1375, 1711, 1853, 1996, 2206, 2449
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	5 cut(s)	35, 1048, 1312, 2440, 2836
BseMI	GCAATG	7 cut(s)	773, 900, 1589, 1655, 2004, 2332, 2820
BseMII	CTCAG	5 cut(s)	188, 847, 1709, 2492, 2529
BseNI	ACTGG	5 cut(s)	186, 273, 571, 1284, 1846
BseRI	GAGGAG	8 cut(s)	1715, 1778, 1793, 2575, 2717, 2777, 2873, 2916
BseXI	GCAGC	8 cut(s)	432, 656, 925, 1050, 1108, 2332, 2342, 2630
BsgI	GTGCAG	4 cut(s)	272, 519, 2472, 2529
BshFI	GGCC	7 cut(s)	58, 128, 545, 776, 2432, 2739, 2840
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	1096
BsiHKCI	CYCGRG	1 cut(s)	2193
BslFI	GGGAC	2 cut(s)	212, 2623
BslI	CCNNNNNNNGG	5 cut(s)	35, 1048, 1312, 2440, 2836
BsmFI	GGGAC	2 cut(s)	212, 2623
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	7 cut(s)	58, 128, 545, 776, 2432, 2739, 2840
BsoBI	CYCGRG	1 cut(s)	2193
Bsp1286I	GDGCHC	2 cut(s)	1096, 2528
Bsp1407I	TGTACA	2 cut(s)	116, 1708
Bsp143I	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
BspACI	CCGC	3 cut(s)	146, 521, 1628
BspANI	GGCC	7 cut(s)	58, 128, 545, 776, 2432, 2739, 2840
BspCNI	CTCAG	5 cut(s)	187, 846, 1710, 2493, 2528
BspLI	GGNNCC	4 cut(s)	519, 1538, 1578, 2374
BspMAI	CTGCAG	1 cut(s)	551
BspPI	GGATC	6 cut(s)	1100, 1571, 1584, 1989, 2120, 2561
BspQI	GCTCTTC	1 cut(s)	2803
BspT107I	GGYRCC	1 cut(s)	517
BsrDI	GCAATG	7 cut(s)	773, 900, 1589, 1655, 2004, 2332, 2820
BsrGI	TGTACA	2 cut(s)	116, 1708
BsrI	ACTGG	5 cut(s)	186, 273, 571, 1284, 1846
BssECI	CCNNGG	3 cut(s)	1033, 1440, 2635
BssMI	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
Bst2UI	CCWGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
Bst4CI	ACNGT	6 cut(s)	585, 786, 1433, 1970, 2141, 2675
Bst6I	CTCTTC	3 cut(s)	74, 2223, 2803
BstAPI	GCANNNNNTGC	1 cut(s)	2491
BstAUI	TGTACA	2 cut(s)	116, 1708
BstDSI	CCRYGG	1 cut(s)	2635
BstF5I	GGATG	9 cut(s)	575, 616, 1364, 1375, 1711, 1853, 1996, 2206, 2449
BstH2I	RGCGCY	1 cut(s)	2285
BstHHI	GCGC	4 cut(s)	907, 1176, 2284, 2325
BstKTI	GATC	8 cut(s)	595, 1108, 1214, 1579, 1984, 2128, 2569, 2604
BstMBI	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
BstMWI	GCNNNNNNNGC	9 cut(s)	542, 653, 805, 1035, 1451, 2030, 2429, 2491, 2624
BstNI	CCWGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
BstNSI	RCATGY	1 cut(s)	351
BstPAI	GACNNNNGTC	1 cut(s)	2503
BstSCI	CCNGG	7 cut(s)	453, 1011, 1033, 1041, 1440, 1594, 2423
BstSFI	CTRYAG	1 cut(s)	547
BstV1I	GCAGC	8 cut(s)	432, 656, 925, 1050, 1108, 2332, 2342, 2630
BstV2I	GAAGAC	1 cut(s)	2013
BstX2I	RGATCY	4 cut(s)	592, 1105, 1576, 2601
BstXI	CCANNNNNNTGG	2 cut(s)	2606, 2747
BstYI	RGATCY	4 cut(s)	592, 1105, 1576, 2601
Bsu36I	CCTNAGG	2 cut(s)	621, 1718
BsuRI	GGCC	7 cut(s)	58, 128, 545, 776, 2432, 2739, 2840
BtgI	CCRYGG	1 cut(s)	2635
BtsCI	GGATG	9 cut(s)	575, 616, 1364, 1375, 1711, 1853, 1996, 2206, 2449
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	4 cut(s)	306, 590, 1975, 2146
CaiI	CAGNNNCTG	2 cut(s)	181, 1717
CfoI	GCGC	4 cut(s)	907, 1176, 2284, 2325
Cfr13I	GGNCC	4 cut(s)	1951, 2431, 2505, 2639
CsiI	ACCWGGT	1 cut(s)	453
Csp6I	GTAC	7 cut(s)	117, 228, 1301, 1709, 2016, 2436, 2456
CviQI	GTAC	7 cut(s)	117, 228, 1301, 1709, 2016, 2436, 2456
DpnI	GATC	8 cut(s)	594, 1107, 1213, 1578, 1983, 2127, 2568, 2603
DpnII	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
EaeI	YGGCCR	3 cut(s)	56, 2737, 2838
Eam1104I	CTCTTC	3 cut(s)	74, 2223, 2803
EarI	CTCTTC	3 cut(s)	74, 2223, 2803
Eco147I	AGGCCT	1 cut(s)	776
Eco24I	GRGCYC	1 cut(s)	2528
Eco32I	GATATC	2 cut(s)	1186, 2788
Eco47I	GGWCC	3 cut(s)	1951, 2505, 2639
Eco57I	CTGAAG	2 cut(s)	2204, 2628
Eco81I	CCTNAGG	2 cut(s)	621, 1718
Eco88I	CYCGRG	1 cut(s)	2193
EcoRI	GAATTC	1 cut(s)	1930
EcoRII	CCWGG	7 cut(s)	453, 1011, 1033, 1041, 1440, 1594, 2423
EcoRV	GATATC	2 cut(s)	1186, 2788
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	2528
FalI	AAGNNNNNCTT	8 cut(s)	594, 626, 991, 1023, 2864, 2896, 2896, 2928
FaqI	GGGAC	2 cut(s)	212, 2623
FauNDI	CATATG	2 cut(s)	1977, 2776
Fnu4HI	GCNGC	9 cut(s)	446, 645, 939, 1039, 1122, 1629, 2321, 2331, 2619
FokI	GGATG	9 cut(s)	582, 603, 1371, 1382, 1718, 1860, 2003, 2213, 2456
FriOI	GRGCYC	1 cut(s)	2528
Fsp4HI	GCNGC	9 cut(s)	446, 645, 939, 1039, 1122, 1629, 2321, 2331, 2619
FspBI	CTAG	6 cut(s)	539, 735, 927, 948, 1178, 2025
GlaI	GCGC	4 cut(s)	906, 1175, 2283, 2324
GluI	GCNGC	9 cut(s)	446, 645, 939, 1039, 1122, 1629, 2321, 2331, 2619
GsuI	CTGGAG	1 cut(s)	1863
HaeII	RGCGCY	1 cut(s)	2285
HaeIII	GGCC	7 cut(s)	58, 128, 545, 776, 2432, 2739, 2840
HhaI	GCGC	4 cut(s)	907, 1176, 2284, 2325
Hin6I	GCGC	4 cut(s)	905, 1174, 2282, 2323
HinP1I	GCGC	4 cut(s)	905, 1174, 2282, 2323
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	2 cut(s)	689, 2819
HinfI	GANTC	9 cut(s)	66, 200, 239, 982, 1199, 1340, 1673, 1742, 2900
HphI	GGTGA	3 cut(s)	160, 1845, 2681
Hpy166II	GTNNAC	7 cut(s)	554, 628, 740, 1951, 1966, 2162, 2213
Hpy8I	GTNNAC	7 cut(s)	554, 628, 740, 1951, 1966, 2162, 2213
HpyAV	CCTTC	4 cut(s)	145, 1872, 1981, 2652
HpyCH4III	ACNGT	6 cut(s)	585, 786, 1433, 1970, 2141, 2675
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	9 cut(s)	542, 653, 805, 1035, 1451, 2030, 2429, 2491, 2624
HpySE526I	ACGT	1 cut(s)	258
HspAI	GCGC	4 cut(s)	905, 1174, 2282, 2323
Kzo9I	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
LguI	GCTCTTC	1 cut(s)	2803
LmnI	GCTCC	4 cut(s)	653, 1034, 1266, 1719
Lsp1109I	GCAGC	8 cut(s)	432, 656, 925, 1050, 1108, 2332, 2342, 2630
LweI	GCATC	7 cut(s)	363, 516, 929, 1838, 1984, 2042, 2342
MabI	ACCWGGT	1 cut(s)	453
MaeI	CTAG	6 cut(s)	539, 735, 927, 948, 1178, 2025
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	6 cut(s)	156, 1420, 1837, 1904, 2380, 2669
MalI	GATC	8 cut(s)	594, 1107, 1213, 1578, 1983, 2127, 2568, 2603
MboI	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
MfeI	CAATTG	1 cut(s)	794
MflI	RGATCY	4 cut(s)	592, 1105, 1576, 2601
MhlI	GDGCHC	2 cut(s)	1096, 2528
MlsI	TGGCCA	3 cut(s)	58, 2739, 2840
MluNI	TGGCCA	3 cut(s)	58, 2739, 2840
MlyI	GAGTC	2 cut(s)	60, 194
MmeI	TCCRAC	1 cut(s)	2532
Mox20I	TGGCCA	3 cut(s)	58, 2739, 2840
Mph1103I	ATGCAT	1 cut(s)	531
MroXI	GAANNNNTTC	4 cut(s)	101, 2217, 2539, 2652
MscI	TGGCCA	3 cut(s)	58, 2739, 2840
MseI	TTAA	9 cut(s)	168, 344, 1784, 2360, 2685, 2799, 2882, 2936, 2941
MslI	CAYNNNNRTG	2 cut(s)	635, 1757
Msp20I	TGGCCA	3 cut(s)	58, 2739, 2840
MspA1I	CMGCKG	4 cut(s)	146, 445, 523, 1355
MspR9I	CCNGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
MunI	CAATTG	1 cut(s)	794
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
MwoI	GCNNNNNNNGC	9 cut(s)	542, 653, 805, 1035, 1451, 2030, 2429, 2491, 2624
NdeI	CATATG	2 cut(s)	1977, 2776
NdeII	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
NlaIV	GGNNCC	4 cut(s)	519, 1538, 1578, 2374
NmeAIII	GCCGAG	1 cut(s)	2545
NmuCI	GTSAC	2 cut(s)	2380, 2669
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	2193
PceI	AGGCCT	1 cut(s)	776
PciI	ACATGT	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	2803
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	4 cut(s)	101, 2217, 2539, 2652
PfeI	GAWTC	7 cut(s)	239, 982, 1199, 1340, 1673, 1742, 2900
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	9 cut(s)	447, 646, 940, 1040, 1123, 1630, 2322, 2332, 2620
PleI	GAGTC	2 cut(s)	60, 194
PpsI	GAGTC	2 cut(s)	60, 194
PscI	ACATGT	1 cut(s)	347
PshAI	GACNNNNGTC	1 cut(s)	2503
Psp6I	CCWGG	7 cut(s)	453, 1011, 1033, 1041, 1440, 1594, 2423
PspGI	CCWGG	7 cut(s)	453, 1011, 1033, 1041, 1440, 1594, 2423
PspN4I	GGNNCC	4 cut(s)	519, 1538, 1578, 2374
PspPI	GGNCC	4 cut(s)	1951, 2431, 2505, 2639
PstI	CTGCAG	1 cut(s)	551
PstNI	CAGNNNCTG	2 cut(s)	181, 1717
PsuI	RGATCY	4 cut(s)	592, 1105, 1576, 2601
PvuII	CAGCTG	2 cut(s)	445, 1355
RsaI	GTAC	7 cut(s)	118, 229, 1302, 1710, 2017, 2437, 2457
RsaNI	GTAC	7 cut(s)	117, 228, 1301, 1709, 2016, 2436, 2456
RseI	CAYNNNNRTG	2 cut(s)	635, 1757
SapI	GCTCTTC	1 cut(s)	2803
SaqAI	TTAA	9 cut(s)	168, 344, 1784, 2360, 2685, 2799, 2882, 2936, 2941
SatI	GCNGC	9 cut(s)	446, 645, 939, 1039, 1122, 1629, 2321, 2331, 2619
Sau3AI	GATC	8 cut(s)	592, 1105, 1211, 1576, 1981, 2125, 2566, 2601
Sau96I	GGNCC	4 cut(s)	1951, 2431, 2505, 2639
SchI	GAGTC	2 cut(s)	60, 194
ScrFI	CCNGG	7 cut(s)	455, 1013, 1035, 1043, 1442, 1596, 2425
SduI	GDGCHC	2 cut(s)	1096, 2528
SexAI	ACCWGGT	1 cut(s)	453
SfaNI	GCATC	7 cut(s)	363, 516, 929, 1838, 1984, 2042, 2342
SfcI	CTRYAG	1 cut(s)	547
Sfr274I	CTCGAG	1 cut(s)	2193
SinI	GGWCC	3 cut(s)	1951, 2505, 2639
SlaI	CTCGAG	1 cut(s)	2193
SmiMI	CAYNNNNRTG	2 cut(s)	635, 1757
SmlI	CTYRAG	4 cut(s)	80, 686, 879, 2193
SmoI	CTYRAG	4 cut(s)	80, 686, 879, 2193
SpeI	ACTAGT	2 cut(s)	538, 734
SseBI	AGGCCT	1 cut(s)	776
SsiI	CCGC	3 cut(s)	146, 521, 1628
SspI	AATATT	2 cut(s)	1254, 1790
SspMI	CTAG	6 cut(s)	539, 735, 927, 948, 1178, 2025
StuI	AGGCCT	1 cut(s)	776
StyD4I	CCNGG	7 cut(s)	453, 1011, 1033, 1041, 1440, 1594, 2423
TaaI	ACNGT	6 cut(s)	585, 786, 1433, 1970, 2141, 2675
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	6 cut(s)	76, 391, 420, 1210, 2194, 2416
TatI	WGTACW	3 cut(s)	116, 1300, 1708
TauI	GCSGC	1 cut(s)	1631
TfiI	GAWTC	7 cut(s)	239, 982, 1199, 1340, 1673, 1742, 2900
Tru1I	TTAA	9 cut(s)	168, 344, 1784, 2360, 2685, 2799, 2882, 2936, 2941
Tru9I	TTAA	9 cut(s)	168, 344, 1784, 2360, 2685, 2799, 2882, 2936, 2941
TscAI	CASTG	4 cut(s)	306, 590, 1975, 2146
TseFI	GTSAC	2 cut(s)	2380, 2669
TseI	GCWGC	8 cut(s)	445, 644, 938, 1038, 1121, 2320, 2330, 2618
Tsp45I	GTSAC	2 cut(s)	2380, 2669
TspGWI	ACGGA	3 cut(s)	2018, 2263, 2712
TspRI	CASTG	4 cut(s)	306, 590, 1975, 2146
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	3 cut(s)	1951, 2505, 2639
XapI	RAATTY	8 cut(s)	208, 727, 1412, 1599, 1799, 1930, 2144, 2648
XceI	RCATGY	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	2193
XmnI	GAANNNNTTC	4 cut(s)	101, 2217, 2539, 2652
XspI	CTAG	6 cut(s)	539, 735, 927, 948, 1178, 2025
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.