Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Forward (+)

2743538 .. 2744539

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGGGAACCCCGGCCAGAGGATGAAAAGGTTGAAACTCTTCCTTCTGACGAAAAGCAGCGGAGAAAACGCAAACGAACAATAATGAATGATATGCAGGTGGAGCTTGTTGAGAGAGCCCTATTGGATGAACCTGATATGCAGCGAAATGCAGCCTCAATACAATCATGGGCTGAGAAATTAAGTTTTCAAGGTTCTGAGGTTACATTTGCACAGCTAAAAAATTGGTTAAACAATCGAAAAGCCAGGCTAGCCCGCACAGCTAAGGATGTTCGTGCAACACCAGAGGCTGACAATGCTTTGCCAGACAAGCAAGGTGGGCGGGGGCAAAGGTCCAACATCTCCCCCGATAGTCCTGGTAGAGATGCTTCCGCCCAACTAAATGCGAGGAGAGATCCTCAAACCATGTTGAGAACTGCTATGGCAGCGGTAGCTGAGAATAACATGGCAGAAGCAGTTGCCAGTTGTCCTGCAGAATTTGCACAGTGCAAGCAAGGTGACTCTGTTGTGCTGGTAGGCGCAAATGGAGAGGAGCTCGGAATAGGAAATGTGTTTCAGGTGCGTGGCCAATGGTACGGTAGGAACTTAGAAGAGCTGAGGACGTATGTTGTGGATGTTAAAGAGCTTAAAGCTCGAAGGGCAATGAGGCTTCCGCACCCATCTATGGCCACGGGCGTTTCATTTGAGGAGGCAGAAACAAAGATTGGCGTAATGAGGGTGTTGTGGGATTCGAACATGACTTTATCGTCCTCAATGAGTTATATGCAAGTAAAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.9

Weight (kDa)

8.51

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
AasI	GACNNNNNNGTC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	6 cut(s)	61, 256, 322, 372, 428, 653
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	3 cut(s)	14, 565, 666
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	19, 664
AgsI	TTSAA	2 cut(s)	35, 191
AjnI	CCWGG	2 cut(s)	245, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	8 cut(s)	106, 217, 263, 434, 535, 595, 625, 632
AluI	AGCT	8 cut(s)	106, 217, 263, 434, 535, 595, 625, 632
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	14, 565, 666
ApeKI	GCWGC	4 cut(s)	58, 142, 152, 425
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	731
AsuNHI	GCTAGC	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	333
BalI	TGGCCA	2 cut(s)	567, 668
BanII	GRGCYC	2 cut(s)	121, 537
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	596
BbvI	GCAGC	4 cut(s)	70, 154, 164, 437
BccI	CCATC	1 cut(s)	667
BciT130I	CCWGG	2 cut(s)	247, 357
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	4 cut(s)	59, 143, 153, 426
BlsI	GCNGC	4 cut(s)	60, 144, 154, 427
Bme1390I	CCNGG	3 cut(s)	13, 247, 357
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	13, 247, 357
BmsI	GCATC	1 cut(s)	355
BmtI	GCTAGC	1 cut(s)	254
BplI	GAGNNNNNCTC	4 cut(s)	382, 414, 519, 551
Bpu10I	CCTNAGC	2 cut(s)	264, 596
Bpu14I	TTCGAA	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	11, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 664
Bse1I	ACTGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	247, 357
BseDI	CCNNGG	2 cut(s)	11, 669
BseGI	GGATG	4 cut(s)	28, 133, 274, 619
BseLI	CCNNNNNNNGG	2 cut(s)	19, 664
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	4 cut(s)	165, 189, 426, 587
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	3 cut(s)	403, 545, 701
BseXI	GCAGC	4 cut(s)	70, 154, 164, 437
BshFI	GGCC	3 cut(s)	16, 567, 668
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	19, 664
BsnI	GGCC	3 cut(s)	16, 567, 668
Bsp119I	TTCGAA	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	121, 537
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	6 cut(s)	61, 256, 322, 372, 428, 653
BspANI	GGCC	3 cut(s)	16, 567, 668
BspCNI	CTCAG	4 cut(s)	166, 190, 427, 588
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	88
BspOI	GCTAGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	389
BspQI	GCTCTTC	1 cut(s)	585
BspT104I	TTCGAA	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	2 cut(s)	11, 669
BssMI	GATC	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	247, 357
Bst4CI	ACNGT	2 cut(s)	486, 578
Bst6I	CTCTTC	2 cut(s)	45, 585
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	252, 256, 491
BstDEI	CTNAG	6 cut(s)	174, 198, 264, 435, 586, 596
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	4 cut(s)	28, 133, 274, 619
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstNI	CCWGG	2 cut(s)	247, 357
BstSCI	CCNGG	3 cut(s)	11, 245, 355
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	4 cut(s)	70, 154, 164, 437
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	16, 567, 668
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	4 cut(s)	28, 133, 274, 619
BtsIMutI	CAGTG	1 cut(s)	491
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	252, 256, 491
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	4 cut(s)	168, 406, 445, 736
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	6 cut(s)	174, 198, 264, 435, 586, 596
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
DrdI	GACNNNNNNGTC	1 cut(s)	745
DseDI	GACNNNNNNGTC	1 cut(s)	745
EaeI	YGGCCR	3 cut(s)	14, 565, 666
Eam1104I	CTCTTC	2 cut(s)	45, 585
EarI	CTCTTC	2 cut(s)	45, 585
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	2 cut(s)	121, 537
Eco47I	GGWCC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	245, 355
EcoT38I	GRGCYC	2 cut(s)	121, 537
FaeI	CATG	4 cut(s)	171, 409, 448, 739
FatI	CATG	4 cut(s)	167, 405, 444, 735
FauI	CCCGC	2 cut(s)	263, 315
Fnu4HI	GCNGC	4 cut(s)	59, 143, 153, 426
FokI	GGATG	4 cut(s)	35, 140, 281, 626
FriOI	GRGCYC	2 cut(s)	121, 537
Fsp4HI	GCNGC	4 cut(s)	59, 143, 153, 426
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	4 cut(s)	59, 143, 153, 426
HaeIII	GGCC	3 cut(s)	16, 567, 668
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	171, 409, 448, 739
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	500, 728
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	3 cut(s)	49, 199, 539
HpyAV	CCTTC	2 cut(s)	54, 630
HpyCH4III	ACNGT	2 cut(s)	486, 578
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	9 cut(s)	97, 142, 152, 212, 278, 473, 482, 489, 766
HpyF3I	CTNAG	6 cut(s)	174, 198, 264, 435, 586, 596
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	4 cut(s)	171, 409, 448, 739
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	394
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	2 cut(s)	103, 532
Lsp1109I	GCAGC	4 cut(s)	70, 154, 164, 437
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	202, 497
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	2 cut(s)	32, 602
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	121, 537
MlsI	TGGCCA	2 cut(s)	567, 668
MluCI	AATT	3 cut(s)	179, 223, 476
MluNI	TGGCCA	2 cut(s)	567, 668
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	360
Mox20I	TGGCCA	2 cut(s)	567, 668
MroXI	GAANNNNTTC	1 cut(s)	39
MscI	TGGCCA	2 cut(s)	567, 668
MseI	TTAA	5 cut(s)	182, 230, 618, 627, 778
Msp20I	TGGCCA	2 cut(s)	567, 668
MspA1I	CMGCKG	2 cut(s)	61, 428
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	13, 247, 357
MvaI	CCWGG	2 cut(s)	247, 357
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	1 cut(s)	394
NheI	GCTAGC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	171, 409, 448, 739
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	731
PaqCI	CACCTGC	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	60, 144, 154, 427
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	2 cut(s)	245, 355
PspGI	CCWGG	2 cut(s)	245, 355
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SacI	GAGCTC	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	5 cut(s)	182, 230, 618, 627, 778
SatI	GCNGC	4 cut(s)	59, 143, 153, 426
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	13, 247, 357
SduI	GDGCHC	2 cut(s)	121, 537
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	471
SfuI	TTCGAA	1 cut(s)	731
SinI	GGWCC	1 cut(s)	333
Sse9I	AATT	3 cut(s)	179, 223, 476
SsiI	CCGC	6 cut(s)	61, 256, 322, 372, 428, 653
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	3 cut(s)	11, 245, 355
TaaI	ACNGT	2 cut(s)	486, 578
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	3 cut(s)	238, 634, 731
TasI	AATT	3 cut(s)	179, 223, 476
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	5 cut(s)	182, 230, 618, 627, 778
Tru9I	TTAA	5 cut(s)	182, 230, 618, 627, 778
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	58, 142, 152, 425
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	39, 101, 144, 669
TspRI	CASTG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.