Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011092.1

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Forward (+)

3748 .. 10447

Gene Structure 6700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011092.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

atgaaaccggttaaagaagagccgtcgtcatgcaatgcttcacaagccattgacttagtttcagcggtgaaggagttacacgggcttaattctcaggaactgggtaaattattgagggactctgaaaattttaccataaactatggtgctgaaaaggaatcaagtctaaagattgacgttgaaaagcttgccagttctctccctctgcaccttattgcagtgcttatatcatctgacaaagatgaagccctattcagatacttaacatgtggcatcaggctcttgcactccttgtgtgatttagcacctcgaaatgccaaacttgaacagattttgctcgatgatgtaaaagtgtcagaacagctgcttgatctggtgttctatatcctcattgttttgggtggttatgaacagaaaaataacaatttcagtatggcaccgctgatgcattctgcactagtggcctgcagtttacatctacttactggatgtatatcttcacagtggcaagatctggttcaagtattgcttgcacatcctaaggttgacatatttatggaggcagcttttggagcagttaatgtttccatcaagtttctcaaccttaagctttcatctcaacataccgatttctatacaaaatcaaatttgactagtgaacaaatagttcattctctctgccagcaatgtgaggcctctttacagtttctccaattgctgtgccagcaaaaattgtttcgggaacgactactcaggaataaggaactatgtggaaaaggtggtgttctctttctggctcaagccatcttgaagctaaacattgcgcctcattttgtagcatctgctagaattgtggctgctgtatctaggctgaaagcaaaaatactctcaattctgttgaatctttgtgaagcagaaagcatatcttacctggatgaagttgccagctccccaggcagcctggatttggcaaagtctgttgcattggagattattgagttattgaagtgtgctctgggtaaagatcccagatgttttgctgcttgttctgatggaagttatccgatggggcttgcccaactcaatgccatgcgcctagctgatatcttatctgatgattcaaactttcgatcttacattacaatacattttactaaagtgctgactgcaatattttcgctccctcatcgagaatttttatccagttggtgttcatctgtactccctgtaaaggaagaagatggcactattgagtatgattcctttgcaacagctggatgggttttggatgtagtttcatctattgaactgcataatgcacgaagtttagaattttctgtacctcgcaacagtatgacccaggcttcttatgcacatcagagaacatcattatttgtgaaaataattgcaaacctccattgtttcattcccactatctgtgaagaacaggagaggaacctttttgctaacaagtttatggagtgcttgcaaatggatccatctaactcattgtctggaatttcctttgcttctgatactctgaaagcggcaactatcagcagaaatctttgttcattgctaagtcatgccgaatctctaattccaaactttttgaatgaggaggatgtacagctcctgagggttttctctaagcaatttgaatcactactcactccaatggaggagaagaaatgcgaggagttaaaatattgggataaatttgctaaactcaacatcagcgaacatcatcaggaggttactggaggatgctcaccactaccttcaataagacaactacctcttagttttagtagaagaagtggtaacctggaggaaataaagtccgagaattcagcttttcaagatgtggaccaagttgatgtgaacagtgagcatgtggatcagaaggatgatgcaatgacggaagacaaaggtacatctgctagaagtgcatctggacgatttacagcaatcgacagagatattcataatgttgaaacaagtggttcagacacaagtgaaacaagaggtaaaaatgctgttgatccaatgggaaacagtgaatttccaaagtcaagtgaacccatagaagaaagtggatatggaggaactcgagaggatgaaaagagtgaacctcttcagtatgaagaaacgcagagaagaaaacggaaacgaacaataatgaatgatgaacaggtggcacttgtggagaaagccctaatagatgaacctgatatgcagcgcaatgcagcatcactacaatcatgggctgataaattaagttctcatggttccgatgtgacatcttcacagctaaaaaattggctgaacaatcgaaaagccaggctggcccgtacaaaggatgttcgtgcagcaccagagttcaatgcactaccagataagcaaggtgtgcaaggactgaggtccaacaactcagccgagagtcctattggaaatgcttctgcacaactaaatgtgaggagtgatcctcaaatgaagctgaatagtagtgtagtccagatctctgggacaaaagcagcagaagctattgcccgcggtgcttcagaatttgttccatgcaagcaaggtgactgtgttttgcttaaatataataacggagaggaggttggcatgggaaaggtgtttcaggcaagtggccaatggtttgggaggaacttggaggagttgagggcatatgttgtggatatcaaagagcttaaagttagaagagcaatgaagcttccatacccatctatggccacaggtggttcatttgaggaggctgaaacaaagattggcttaatgagagtgttatgggattcaagcaagactttcaaattgcctcctctaaggttaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

953

Amino Acids

105.73

Weight (kDa)

5.75

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AccII	CGCG	1 cut(s)	2556
AciI	CCGC	5 cut(s)	65, 440, 1547, 2554, 2556
AclWI	GGATC	6 cut(s)	1019, 1490, 1503, 1908, 2039, 2480
AcoI	YGGCCR	2 cut(s)	2656, 2757
AcsI	RAATTY	9 cut(s)	127, 646, 1193, 1331, 1518, 1718, 1849, 2063, 2567
AcuI	CTGAAG	2 cut(s)	2123, 2547
AfaI	GTAC	5 cut(s)	1221, 1341, 1629, 1936, 2356
AfiI	CCNNNNNNNGG	4 cut(s)	967, 1231, 2359, 2755
AflII	CTTAAG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	266
AgeI	ACCGGT	1 cut(s)	7
AhlI	ACTAGT	2 cut(s)	457, 653
AjnI	CCWGG	6 cut(s)	930, 952, 960, 1359, 1827, 2342
AjuI	GAANNNNNNNTTGG	2 cut(s)	2778, 2810
Alw21I	GWGCWC	1 cut(s)	1015
AlwI	GGATC	6 cut(s)	1019, 1490, 1503, 1908, 2039, 2480
AlwNI	CAGNNNCTG	2 cut(s)	100, 1636
Ama87I	CYCGRG	1 cut(s)	2112
AoxI	GGCC	5 cut(s)	462, 693, 2349, 2656, 2757
ApeKI	GCWGC	9 cut(s)	364, 563, 857, 957, 1040, 2239, 2249, 2372, 2537
ApoI	RAATTY	9 cut(s)	127, 646, 1193, 1331, 1518, 1718, 1849, 2063, 2567
AsiGI	ACCGGT	1 cut(s)	7
Asp700I	GAANNNNTTC	3 cut(s)	2136, 2458, 2571
AspLEI	GCGC	3 cut(s)	826, 1095, 2244
AspS9I	GGNCC	3 cut(s)	1870, 2350, 2424
AsuHPI	GGTGA	3 cut(s)	79, 1764, 2600
AvaI	CYCGRG	1 cut(s)	2112
AvaII	GGWCC	2 cut(s)	1870, 2424
AxyI	CCTNAGG	2 cut(s)	540, 1637
BalI	TGGCCA	2 cut(s)	2658, 2759
BamHI	GGATCC	1 cut(s)	1495
BanI	GGYRCC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	2729, 2761
BbsI	GAAGAC	1 cut(s)	1932
Bbv12I	GWGCWC	1 cut(s)	1015
BbvI	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2251, 2261, 2384, 2549
BccI	CCATC	8 cut(s)	596, 812, 1046, 1060, 1235, 1272, 1507, 2758
BceAI	ACGGC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	1158, 1192
BciT130I	CCWGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
BcuI	ACTAGT	2 cut(s)	457, 653
BfaI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1944
BfmI	CTRYAG	1 cut(s)	466
BfrI	CTTAAG	1 cut(s)	605
BglI	GCCNNNNNGGC	1 cut(s)	2348
BglII	AGATCT	2 cut(s)	511, 2520
Bme1390I	CCNGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
Bme18I	GGWCC	2 cut(s)	1870, 2424
BmeT110I	CYCGRG	1 cut(s)	2112
BmgT120I	GGNCC	3 cut(s)	1870, 2350, 2424
BmiI	GGNNCC	4 cut(s)	438, 1457, 1497, 2293
BmrFI	CCNGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	7 cut(s)	282, 435, 848, 1757, 1903, 1961, 2261
BmuI	ACTGGG	1 cut(s)	110
BoxI	GACNNNNGTC	1 cut(s)	2422
BpiI	GAAGAC	1 cut(s)	1932
BplI	GAGNNNNNCTC	4 cut(s)	2119, 2151, 2473, 2505
BpmI	CTGGAG	2 cut(s)	1782, 1850
BpuEI	CTTGAG	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	952, 1359, 2554
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 2610, 2640
Bsc4I	CCNNNNNNNGG	4 cut(s)	967, 1231, 2359, 2755
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	5 cut(s)	105, 192, 490, 1203, 1765
Bse21I	CCTNAGG	2 cut(s)	540, 1637
Bse3DI	GCAATG	7 cut(s)	40, 692, 819, 1574, 1923, 2251, 2739
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
BseDI	CCNNGG	3 cut(s)	952, 1359, 2554
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	4 cut(s)	967, 1231, 2359, 2755
BseMI	GCAATG	7 cut(s)	40, 692, 819, 1574, 1923, 2251, 2739
BseMII	CTCAG	5 cut(s)	107, 766, 1628, 2411, 2448
BseNI	ACTGG	5 cut(s)	105, 192, 490, 1203, 1765
BseRI	GAGGAG	8 cut(s)	1634, 1697, 1712, 2494, 2636, 2696, 2792, 2835
BseXI	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2251, 2261, 2384, 2549
BsgI	GTGCAG	4 cut(s)	191, 438, 2391, 2448
Bsh1236I	CGCG	1 cut(s)	2556
BshFI	GGCC	5 cut(s)	464, 695, 2351, 2658, 2759
BshNI	GGYRCC	1 cut(s)	436
BshTI	ACCGGT	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	1015
BsiHKCI	CYCGRG	1 cut(s)	2112
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	131, 2542
BslI	CCNNNNNNNGG	4 cut(s)	967, 1231, 2359, 2755
BsmFI	GGGAC	2 cut(s)	131, 2542
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	5 cut(s)	464, 695, 2351, 2658, 2759
BsoBI	CYCGRG	1 cut(s)	2112
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp1407I	TGTACA	1 cut(s)	1627
Bsp143I	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
BspACI	CCGC	5 cut(s)	65, 440, 1547, 2554, 2556
BspANI	GGCC	5 cut(s)	464, 695, 2351, 2658, 2759
BspCNI	CTCAG	5 cut(s)	106, 765, 1629, 2412, 2447
BspFNI	CGCG	1 cut(s)	2556
BspLI	GGNNCC	4 cut(s)	438, 1457, 1497, 2293
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	6 cut(s)	1019, 1490, 1503, 1908, 2039, 2480
BspQI	GCTCTTC	2 cut(s)	12, 2722
BspT107I	GGYRCC	1 cut(s)	436
BspTI	CTTAAG	1 cut(s)	605
BsrDI	GCAATG	7 cut(s)	40, 692, 819, 1574, 1923, 2251, 2739
BsrFI	RCCGGY	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	1627
BsrI	ACTGG	5 cut(s)	105, 192, 490, 1203, 1765
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	3 cut(s)	952, 1359, 2554
BssMI	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
Bst2UI	CCWGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
Bst4CI	ACNGT	6 cut(s)	504, 705, 1352, 1889, 2060, 2594
Bst6I	CTCTTC	3 cut(s)	12, 2142, 2722
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	2410
BstAUI	TGTACA	1 cut(s)	1627
BstDSI	CCRYGG	1 cut(s)	2554
BstEII	GGTNACC	1 cut(s)	1823
BstFNI	CGCG	1 cut(s)	2556
BstHHI	GCGC	3 cut(s)	826, 1095, 2244
BstKTI	GATC	9 cut(s)	373, 514, 1027, 1133, 1498, 1903, 2047, 2488, 2523
BstMBI	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
BstNI	CCWGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
BstNSI	RCATGY	2 cut(s)	270, 1898
BstPAI	GACNNNNGTC	1 cut(s)	2422
BstPI	GGTNACC	1 cut(s)	1823
BstSCI	CCNGG	6 cut(s)	930, 952, 960, 1359, 1827, 2342
BstSFI	CTRYAG	1 cut(s)	466
BstUI	CGCG	1 cut(s)	2556
BstV1I	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2251, 2261, 2384, 2549
BstV2I	GAAGAC	1 cut(s)	1932
BstX2I	RGATCY	4 cut(s)	511, 1024, 1495, 2520
BstXI	CCANNNNNNTGG	2 cut(s)	2525, 2666
BstYI	RGATCY	4 cut(s)	511, 1024, 1495, 2520
Bsu36I	CCTNAGG	2 cut(s)	540, 1637
BsuRI	GGCC	5 cut(s)	464, 695, 2351, 2658, 2759
BtgI	CCRYGG	1 cut(s)	2554
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	4 cut(s)	225, 509, 1894, 2065
CaiI	CAGNNNCTG	2 cut(s)	100, 1636
CfoI	GCGC	3 cut(s)	826, 1095, 2244
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	1870, 2350, 2424
Cfr42I	CCGCGG	1 cut(s)	2557
Csp6I	GTAC	5 cut(s)	1220, 1340, 1628, 1935, 2355
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	9 cut(s)	30, 267, 1090, 1586, 1895, 2265, 2288, 2577, 2632
CviQI	GTAC	5 cut(s)	1220, 1340, 1628, 1935, 2355
DpnI	GATC	9 cut(s)	372, 513, 1026, 1132, 1497, 1902, 2046, 2487, 2522
DpnII	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
EaeI	YGGCCR	2 cut(s)	2656, 2757
Eam1104I	CTCTTC	3 cut(s)	12, 2142, 2722
EarI	CTCTTC	3 cut(s)	12, 2142, 2722
Eco147I	AGGCCT	1 cut(s)	695
Eco32I	GATATC	2 cut(s)	1105, 2707
Eco47I	GGWCC	2 cut(s)	1870, 2424
Eco57I	CTGAAG	2 cut(s)	2123, 2547
Eco81I	CCTNAGG	2 cut(s)	540, 1637
Eco88I	CYCGRG	1 cut(s)	2112
Eco91I	GGTNACC	1 cut(s)	1823
EcoO65I	GGTNACC	1 cut(s)	1823
EcoRI	GAATTC	1 cut(s)	1849
EcoRII	CCWGG	6 cut(s)	930, 952, 960, 1359, 1827, 2342
EcoRV	GATATC	2 cut(s)	1105, 2707
EcoT22I	ATGCAT	1 cut(s)	450
FaeI	CATG	9 cut(s)	33, 270, 1093, 1589, 1898, 2268, 2291, 2580, 2635
FalI	AAGNNNNNCTT	8 cut(s)	513, 545, 910, 942, 2783, 2815, 2815, 2847
FaqI	GGGAC	2 cut(s)	131, 2542
FatI	CATG	9 cut(s)	29, 266, 1089, 1585, 1894, 2264, 2287, 2576, 2631
FauI	CCCGC	1 cut(s)	2561
FauNDI	CATATG	1 cut(s)	2695
FspBI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1944
GlaI	GCGC	3 cut(s)	825, 1094, 2243
GsuI	CTGGAG	2 cut(s)	1782, 1850
HaeIII	GGCC	5 cut(s)	464, 695, 2351, 2658, 2759
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	3 cut(s)	826, 1095, 2244
Hin1II	CATG	9 cut(s)	33, 270, 1093, 1589, 1898, 2268, 2291, 2580, 2635
Hin6I	GCGC	3 cut(s)	824, 1093, 2242
HinP1I	GCGC	3 cut(s)	824, 1093, 2242
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	3 cut(s)	185, 608, 2738
HinfI	GANTC	9 cut(s)	119, 158, 901, 1118, 1259, 1592, 1661, 2443, 2819
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	79, 1764, 2600
Hpy166II	GTNNAC	7 cut(s)	473, 547, 659, 1870, 1885, 2081, 2132
Hpy8I	GTNNAC	7 cut(s)	473, 547, 659, 1870, 1885, 2081, 2132
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	64, 1791, 1900
HpyCH4III	ACNGT	6 cut(s)	504, 705, 1352, 1889, 2060, 2594
HpyCH4IV	ACGT	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	9 cut(s)	33, 270, 1093, 1589, 1898, 2268, 2291, 2580, 2635
HspAI	GCGC	3 cut(s)	824, 1093, 2242
KspI	CCGCGG	1 cut(s)	2557
Kzo9I	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
LguI	GCTCTTC	2 cut(s)	12, 2722
LmnI	GCTCC	4 cut(s)	572, 953, 1185, 1638
Lsp1109I	GCAGC	9 cut(s)	351, 575, 844, 969, 1027, 2251, 2261, 2384, 2549
LweI	GCATC	7 cut(s)	282, 435, 848, 1757, 1903, 1961, 2261
MaeI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1944
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	5 cut(s)	75, 1756, 1823, 2299, 2588
MalI	GATC	9 cut(s)	372, 513, 1026, 1132, 1497, 1902, 2046, 2487, 2522
MboI	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	4 cut(s)	511, 1024, 1495, 2520
MhlI	GDGCHC	1 cut(s)	1015
MlsI	TGGCCA	2 cut(s)	2658, 2759
MluNI	TGGCCA	2 cut(s)	2658, 2759
MlyI	GAGTC	2 cut(s)	113, 2452
MmeI	TCCRAC	1 cut(s)	2451
Mox20I	TGGCCA	2 cut(s)	2658, 2759
Mph1103I	ATGCAT	1 cut(s)	450
MroXI	GAANNNNTTC	3 cut(s)	2136, 2458, 2571
MscI	TGGCCA	2 cut(s)	2658, 2759
MslI	CAYNNNNRTG	2 cut(s)	554, 1676
Msp20I	TGGCCA	2 cut(s)	2658, 2759
MspA1I	CMGCKG	5 cut(s)	65, 364, 442, 1274, 2556
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
MvnI	CGCG	1 cut(s)	2556
NdeI	CATATG	1 cut(s)	2695
NdeII	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
NlaIII	CATG	9 cut(s)	33, 270, 1093, 1589, 1898, 2268, 2291, 2580, 2635
NlaIV	GGNNCC	4 cut(s)	438, 1457, 1497, 2293
NmeAIII	GCCGAG	1 cut(s)	2464
NmuCI	GTSAC	2 cut(s)	2299, 2588
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	2 cut(s)	270, 1898
PaeR7I	CTCGAG	1 cut(s)	2112
PceI	AGGCCT	1 cut(s)	695
PciI	ACATGT	1 cut(s)	266
PciSI	GCTCTTC	2 cut(s)	12, 2722
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	3 cut(s)	2136, 2458, 2571
PfeI	GAWTC	7 cut(s)	158, 901, 1118, 1259, 1592, 1661, 2819
PinAI	ACCGGT	1 cut(s)	7
PleI	GAGTC	2 cut(s)	113, 2451
PpsI	GAGTC	2 cut(s)	113, 2451
PscI	ACATGT	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	2422
Psp6I	CCWGG	6 cut(s)	930, 952, 960, 1359, 1827, 2342
PspEI	GGTNACC	1 cut(s)	1823
PspGI	CCWGG	6 cut(s)	930, 952, 960, 1359, 1827, 2342
PspN4I	GGNNCC	4 cut(s)	438, 1457, 1497, 2293
PspPI	GGNCC	3 cut(s)	1870, 2350, 2424
PstI	CTGCAG	1 cut(s)	470
PstNI	CAGNNNCTG	2 cut(s)	100, 1636
PsuI	RGATCY	4 cut(s)	511, 1024, 1495, 2520
PvuII	CAGCTG	2 cut(s)	364, 1274
RsaI	GTAC	5 cut(s)	1221, 1341, 1629, 1936, 2356
RsaNI	GTAC	5 cut(s)	1220, 1340, 1628, 1935, 2355
RseI	CAYNNNNRTG	2 cut(s)	554, 1676
SacII	CCGCGG	1 cut(s)	2557
SapI	GCTCTTC	2 cut(s)	12, 2722
Sau3AI	GATC	9 cut(s)	370, 511, 1024, 1130, 1495, 1900, 2044, 2485, 2520
Sau96I	GGNCC	3 cut(s)	1870, 2350, 2424
SchI	GAGTC	2 cut(s)	113, 2452
ScrFI	CCNGG	6 cut(s)	932, 954, 962, 1361, 1829, 2344
SduI	GDGCHC	1 cut(s)	1015
SfaNI	GCATC	7 cut(s)	282, 435, 848, 1757, 1903, 1961, 2261
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	2112
Sfr303I	CCGCGG	1 cut(s)	2557
SgrBI	CCGCGG	1 cut(s)	2557
SinI	GGWCC	2 cut(s)	1870, 2424
SlaI	CTCGAG	1 cut(s)	2112
SmiMI	CAYNNNNRTG	2 cut(s)	554, 1676
SmlI	CTYRAG	3 cut(s)	605, 798, 2112
SmoI	CTYRAG	3 cut(s)	605, 798, 2112
SpeI	ACTAGT	2 cut(s)	457, 653
SseBI	AGGCCT	1 cut(s)	695
SsiI	CCGC	5 cut(s)	65, 440, 1547, 2554, 2556
SspI	AATATT	2 cut(s)	1173, 1709
SspMI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1944
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	6 cut(s)	930, 952, 960, 1359, 1827, 2342
TaaI	ACNGT	6 cut(s)	504, 705, 1352, 1889, 2060, 2594
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	7 cut(s)	310, 339, 1129, 1189, 1974, 2113, 2335
TatI	WGTACW	2 cut(s)	1219, 1627
TauI	GCSGC	1 cut(s)	1550
TfiI	GAWTC	7 cut(s)	158, 901, 1118, 1259, 1592, 1661, 2819
TscAI	CASTG	4 cut(s)	225, 509, 1894, 2065
TseFI	GTSAC	2 cut(s)	2299, 2588
TseI	GCWGC	9 cut(s)	364, 563, 857, 957, 1040, 2239, 2249, 2372, 2537
Tsp45I	GTSAC	2 cut(s)	2299, 2588
TspGWI	ACGGA	3 cut(s)	1937, 2182, 2631
TspRI	CASTG	4 cut(s)	225, 509, 1894, 2065
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	1870, 2424
XapI	RAATTY	9 cut(s)	127, 646, 1193, 1331, 1518, 1718, 1849, 2063, 2567
XceI	RCATGY	2 cut(s)	270, 1898
XhoI	CTCGAG	1 cut(s)	2112
XmnI	GAANNNNTTC	3 cut(s)	2136, 2458, 2571
XspI	CTAG	6 cut(s)	458, 654, 846, 867, 1097, 1944
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.