Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002616

Physical Location & Seq

Genomic Coordinates Forward (+)

14702576 .. 14710587

Gene Structure 8012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGAAATATCGCACTCGTTATCTCAGAGTTGTGCAGTTCTCCGGCGAGTTCTCTGCTCAAGCTCAGGTCTGTATATGTTGGCGGCGTATGTTTGGTAGAATGAAACCGGTTAAAGAAGAGCCGTCGTCATGCAATGCTTCACAAGCCATTGACTTAGTTTCAGCGGTGAAGGAGTTACATGGGCTTAACTCTCAGGAACTGGGTAAATTATTGAGGGACTCTGAAAATTTTACCATAAACTATGGTACTGAAAAGGAATCCAGTCTAAAGATTGACGTTGAAAAGCTTGCCAGTTCTCTCCCTCTGCACCTTATTGCAGTGCTTATATCATCTGACAAAGATGAAGCCCTATTCAGACACTTAACATGTGGCATCAGGCTCTTGCACTCCTTGTGTGATTTAGCACCTCGAAATGCCAAACTTGAACAGATTTTGCTCGATGATGTAAAAGTGTCAGAACAGCTGCTTGACCTGGTGTTCTATATCCTCATTGTTTTGGGTGGTTATGAACAGAAAAATAACAATTTCAGTATGGCACCGCTGATGCATTCTGCACTAGTGGCCTGCAGTTTACATCTACTTACTGGATGTATATCTTCACAGTGGCAAGATCTGGTTCAAGTATTGCTTGCACATCCTAAGGTTGACATATTTATGGAGGCAGCTTTTGGAGCAGTTCATGTTTCCATCAAGTTTCTCAACCTCAAGCTTTCATCTCAACATACTGATTTCTATACGAAATCAAATTTGACTAGTGAACAAATAGTTCACTCTCTCTGCCAGCAATGTGAGGCCTCTTTACAGTTTCTCCAATTGCTGTGCCAGCAAAAATTGTTTCGGGAACGACTACTCAGGAATAAGGAACTATGTGGAAAAGGTGGTGTTCTCTTTCTGGCTCAAGCCATCTTGAAGCTAAACATTGCACCTCATTTTGTAGCATCTGCTAGAATTGTGGCTGCCGTATCTAGGCTGAAAGCAAAAATACTCTCAATTCTGTTGAATCTTTGTGAAGCAGAAAGCATATCTTACCTGGACGAAGTTGCCAGCTCCCCAGGCAGCCTGGATTTGGCAAAGTCTGTTGCATTGGAGATTATTGAGTTATTGAAGTGTGCTCTGGGTAAAGATCCCAGATGTTTTGCTGCTTGTTCTGATCGAAATTATCCAATGGGGCTTGCCCAACTCAATGCCATGCGCCTAGCTGATATCTTATCTGATGATTCAAACTTTCGATCTTACATCACAATACATTTTACTAAAGTGCTGACTGCAATATTTTCGCTCCCTCATGGAGATTTTTTATCCCGTTGGTGTTCATCTGTGCTCCCTGTAAAGGAAGAAGATGGCACTATTGAGTATGATTCCTTTGCAACAGCTGGATGGGTTTTGGATGTAGTTTCATCTATTGAACTGCATAATGCACGAAGTTTAGAATTTTCTGTAACTCGCAACAGTATGACCCAGGCTTCTTATGCACATCAGAGAACATCATTATTTGTGAAAATAATTGCAAACCTCCATTGTTTCATTCCCACTATCTGCGAAGAACAGGAGAGGAACCTTTTTGCTAACAAGTTTATGGAGTGCTTGCAAATGGATCCATCTAACTCATTGCCTGGAATTTCGTTTGCTTCTGATACTCTGAAAGCGGCTACTATCAGCAGAAATCTTTGTTCATTGCTAAGTCATGCCGAATCTCTAATTCCAAACTTTTTGAATGAGGAGGATGTACAGCTCCTGAGGGTTTTCTCTAAGCAATTTGAATCACTACTCACTCCAATGGAGGAGAAGAAATGCGAGGAGTTAAAATATTGGGATAAATTTGCTAAACTCAACATCAGCGAACATCATCAGGAGGTTACTGGAGGATGCTCACCACTACCTTCAATAAGACAACTACCTCTTAGTTTTAGTAGAAGAAGTGGTAACCTGGAGGAAATAAAGTCCGAGAATTCTGCTTTTCAAGATGTGGACCAAGTTGATGTGAACAGTGAGCATATGGATCAGAAGGATGATGCAATGACGGAAGACAAAGGTACATCTGCTAGAAGTGCATCTGGACGATTTACAGCAATCGACAGAGATATTCATAATGTTGAAACAAGTGGTTCAGACACAAGCGAAACAAGAGGGAAAAATGCTGTTGATCCAATGGGAAACAATGATTTTCCAAAGTCAAGTGAACCCATAGAAGAAAGTGGATATGGAGGAACTCGAGAGGATGAAAAGAGTGAACCTCTTCAGTATGAAGAAACGCAGAGAAGAAAACGGAAACGAACAATAATGAATGATGAACAGGTGGCGCTTGTGGAGAAAGCCCTAATAGATGAACCTGATATGCAGCGCAATGCTGCATCACTACAATCATGGGCTGATAAATTAAGTTCTCATGGTTCCGATGTGACATCTTCACAGCTAAAAAATTGGCTGAACAATCGAAAAGCCAGGCTGGCCCGTACAAAGGATGTTCGTGCAGCACCAGAGTTCAATGCACTACCAGATAAGCAAGGTGTGCAAGGACTGAGGTCCAACAACTCAGCCGAGAGTCCTATTGGAAATGCTTCTGCACAACTAAATGTGAGGAGTGATCCTCAAATGAAGCTGAATAGTAGTGTAGTCCAGATCTCTGGGACAAAAGCAGCAGAAGCTATTGCCCGTGGTCCTTCAGAATTTGTTCCATGCAAGCAAGGTGACTGTGTTTTGCTTAAATATAATAACGGAGAGGAGGTTGGCATAGGAAAGGTATTTCAGGCGAGTGGCCAATGGTTTGGGAGGAACTTGGAGGAGTTGAGGGCATATGTTGTGGATATCAAAGAGCTTAAAGTTAGAAGAGCAATGAAGCTTCCATACCCATCTATGGCCACAGGTGGTTCATTTGAGGAGGCTGAAACAAAGATTGGCTTAATGAGAGTCTTATGGGATTCAAGCAAGACTTTCAAATTGCCTCCTCTAAGGTTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

987

Amino Acids

109.97

Weight (kDa)

6.18

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin_N	PF25246	48 - 565	2.5e-262	Nodulin N-terminal domain
HTH_NDX	PF24426	761 - 821	5.4e-35	NDX Homeobox-like domain
Nodulin_C	PF24679	891 - 976	1.8e-35	Nodulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03090 AT4G03090 AT4G03090 AT4G03090 AT4G03090
fragaria_vesca	FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24490 FvH4_2g24530 FvH4_2g24530 FvH4_5g24052
malus_domestica	MD02G1277900.v1.1
prunus_persica	Prupe.8G250800_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1 Prupe.8G267900_v2.0.a1
pyrus_communis	pycom02g23790 pycom07g03300
rosa_chinensis	RchiOBHm_Chr6g0292351
rosa_laevigata	RLG00000012038
rosa_multiflora	Rmu_co8039390.1_g000001 Rmu_sc0001354.1_g000010 Rmu_sc0011092.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175160
rosa_rugosa	Rorug06G0225700 Rorug06G0225700 Rorug06G0225700 Rorug06G0225800 Rorug06G0225800
rosa_samantha	Rh6AG339000 Rh6BG346400 Rh6CG353300 Rh6DG339200
rosa_wichuraiana	Rw6G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	535
AciI	CCGC	4 cut(s)	82, 164, 539, 1646
AclWI	GGATC	6 cut(s)	1118, 1589, 1602, 2007, 2138, 2579
AcoI	YGGCCR	2 cut(s)	2755, 2856
AcsI	RAATTY	7 cut(s)	226, 745, 1430, 1617, 1817, 1948, 2666
AcuI	CTGAAG	2 cut(s)	2222, 2646
AfaI	GTAC	4 cut(s)	247, 1728, 2035, 2455
AfiI	CCNNNNNNNGG	5 cut(s)	966, 1066, 1330, 2458, 2854
AflIII	ACRYGT	1 cut(s)	365
AgeI	ACCGGT	1 cut(s)	106
AhlI	ACTAGT	2 cut(s)	556, 752
AjnI	CCWGG	8 cut(s)	471, 1029, 1051, 1059, 1458, 1612, 1926, 2441
AjuI	GAANNNNNNNTTGG	2 cut(s)	2877, 2909
Alw21I	GWGCWC	2 cut(s)	1114, 1323
AlwI	GGATC	6 cut(s)	1118, 1589, 1602, 2007, 2138, 2579
AlwNI	CAGNNNCTG	2 cut(s)	199, 1735
Ama87I	CYCGRG	1 cut(s)	2211
AoxI	GGCC	5 cut(s)	561, 792, 2448, 2755, 2856
ApeKI	GCWGC	9 cut(s)	463, 662, 956, 1056, 1139, 2338, 2348, 2471, 2636
ApoI	RAATTY	7 cut(s)	226, 745, 1430, 1617, 1817, 1948, 2666
AsiGI	ACCGGT	1 cut(s)	106
Asp700I	GAANNNNTTC	3 cut(s)	2235, 2557, 2670
AspLEI	GCGC	3 cut(s)	1194, 2302, 2343
AspS9I	GGNCC	4 cut(s)	1969, 2449, 2523, 2657
AsuHPI	GGTGA	3 cut(s)	178, 1863, 2699
AvaI	CYCGRG	1 cut(s)	2211
AvaII	GGWCC	3 cut(s)	1969, 2523, 2657
AxyI	CCTNAGG	2 cut(s)	639, 1736
BalI	TGGCCA	2 cut(s)	2757, 2858
BamHI	GGATCC	1 cut(s)	1594
BanI	GGYRCC	1 cut(s)	535
BarI	GAAGNNNNNNTAC	2 cut(s)	2828, 2860
BbsI	GAAGAC	1 cut(s)	2031
Bbv12I	GWGCWC	2 cut(s)	1114, 1323
BbvI	GCAGC	9 cut(s)	450, 674, 943, 1068, 1126, 2335, 2350, 2483, 2648
BccI	CCATC	6 cut(s)	695, 911, 1334, 1371, 1606, 2857
BceAI	ACGGC	2 cut(s)	106, 944
BcgI	CGANNNNNNTGC	6 cut(s)	35, 69, 1257, 1291, 1934, 1968
BciT130I	CCWGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
BcuI	ACTAGT	2 cut(s)	556, 752
BfaI	CTAG	6 cut(s)	557, 753, 945, 966, 1196, 2043
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	2303
BglI	GCCNNNNNGGC	1 cut(s)	2447
BglII	AGATCT	2 cut(s)	610, 2619
Bme1390I	CCNGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
Bme18I	GGWCC	3 cut(s)	1969, 2523, 2657
BmeT110I	CYCGRG	1 cut(s)	2211
BmgT120I	GGNCC	4 cut(s)	1969, 2449, 2523, 2657
BmiI	GGNNCC	4 cut(s)	537, 1556, 1596, 2392
BmrFI	CCNGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	7 cut(s)	381, 534, 947, 1856, 2002, 2060, 2360
BmuI	ACTGGG	1 cut(s)	209
BoxI	GACNNNNGTC	1 cut(s)	2521
BpiI	GAAGAC	1 cut(s)	2031
BplI	GAGNNNNNCTC	4 cut(s)	2218, 2250, 2572, 2604
BpmI	CTGGAG	2 cut(s)	1881, 1949
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	3 cut(s)	42, 689, 882
BsaBI	GATNNNNATC	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	1051, 1458, 2653
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	792, 822, 2709, 2739
Bsc4I	CCNNNNNNNGG	5 cut(s)	966, 1066, 1330, 2458, 2854
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	5 cut(s)	204, 261, 291, 589, 1864
Bse21I	CCTNAGG	2 cut(s)	639, 1736
Bse3DI	GCAATG	8 cut(s)	139, 791, 918, 1607, 1673, 2022, 2350, 2838
Bse8I	GATNNNNATC	1 cut(s)	592
BseBI	CCWGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
BseDI	CCNNGG	3 cut(s)	1051, 1458, 2653
BseGI	GGATG	9 cut(s)	593, 634, 1382, 1393, 1729, 1871, 2014, 2224, 2467
BseJI	GATNNNNATC	1 cut(s)	592
BseLI	CCNNNNNNNGG	5 cut(s)	966, 1066, 1330, 2458, 2854
BseMI	GCAATG	8 cut(s)	139, 791, 918, 1607, 1673, 2022, 2350, 2838
BseMII	CTCAG	7 cut(s)	37, 77, 206, 865, 1727, 2510, 2547
BseNI	ACTGG	5 cut(s)	204, 261, 291, 589, 1864
BseRI	GAGGAG	8 cut(s)	1733, 1796, 1811, 2593, 2735, 2795, 2891, 2934
BseXI	GCAGC	9 cut(s)	450, 674, 943, 1068, 1126, 2335, 2350, 2483, 2648
BsgI	GTGCAG	5 cut(s)	53, 290, 537, 2490, 2547
BshFI	GGCC	5 cut(s)	563, 794, 2450, 2757, 2858
BshNI	GGYRCC	1 cut(s)	535
BshTI	ACCGGT	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	1114, 1323
BsiHKCI	CYCGRG	1 cut(s)	2211
BsiSI	CCGG	2 cut(s)	42, 107
BslFI	GGGAC	2 cut(s)	230, 2641
BslI	CCNNNNNNNGG	5 cut(s)	966, 1066, 1330, 2458, 2854
BsmFI	GGGAC	2 cut(s)	230, 2641
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	5 cut(s)	563, 794, 2450, 2757, 2858
BsoBI	CYCGRG	1 cut(s)	2211
Bsp1286I	GDGCHC	2 cut(s)	1114, 1323
Bsp1407I	TGTACA	1 cut(s)	1726
Bsp143I	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
BspACI	CCGC	4 cut(s)	82, 164, 539, 1646
BspANI	GGCC	5 cut(s)	563, 794, 2450, 2757, 2858
BspCNI	CTCAG	7 cut(s)	36, 76, 205, 864, 1728, 2511, 2546
BspLI	GGNNCC	4 cut(s)	537, 1556, 1596, 2392
BspMAI	CTGCAG	1 cut(s)	569
BspPI	GGATC	6 cut(s)	1118, 1589, 1602, 2007, 2138, 2579
BspQI	GCTCTTC	2 cut(s)	111, 2821
BspT107I	GGYRCC	1 cut(s)	535
BsrDI	GCAATG	8 cut(s)	139, 791, 918, 1607, 1673, 2022, 2350, 2838
BsrFI	RCCGGY	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	1726
BsrI	ACTGG	5 cut(s)	204, 261, 291, 589, 1864
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	1051, 1458, 2653
BssMI	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
Bst2UI	CCWGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
Bst4CI	ACNGT	5 cut(s)	603, 804, 1451, 1988, 2693
Bst6I	CTCTTC	3 cut(s)	111, 2241, 2821
BstAPI	GCANNNNNTGC	1 cut(s)	2509
BstAUI	TGTACA	1 cut(s)	1726
BstDSI	CCRYGG	1 cut(s)	2653
BstEII	GGTNACC	1 cut(s)	1922
BstF5I	GGATG	9 cut(s)	593, 634, 1382, 1393, 1729, 1871, 2014, 2224, 2467
BstH2I	RGCGCY	1 cut(s)	2303
BstHHI	GCGC	3 cut(s)	1194, 2302, 2343
BstKTI	GATC	9 cut(s)	613, 1126, 1153, 1232, 1597, 2002, 2146, 2587, 2622
BstMBI	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
BstNI	CCWGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
BstNSI	RCATGY	1 cut(s)	369
BstPAI	GACNNNNGTC	1 cut(s)	2521
BstPI	GGTNACC	1 cut(s)	1922
BstSCI	CCNGG	8 cut(s)	471, 1029, 1051, 1059, 1458, 1612, 1926, 2441
BstSFI	CTRYAG	1 cut(s)	565
BstV1I	GCAGC	9 cut(s)	450, 674, 943, 1068, 1126, 2335, 2350, 2483, 2648
BstV2I	GAAGAC	1 cut(s)	2031
BstX2I	RGATCY	4 cut(s)	610, 1123, 1594, 2619
BstXI	CCANNNNNNTGG	2 cut(s)	2624, 2765
BstYI	RGATCY	4 cut(s)	610, 1123, 1594, 2619
Bsu36I	CCTNAGG	2 cut(s)	639, 1736
BsuRI	GGCC	5 cut(s)	563, 794, 2450, 2757, 2858
BtgI	CCRYGG	1 cut(s)	2653
BtsCI	GGATG	9 cut(s)	593, 634, 1382, 1393, 1729, 1871, 2014, 2224, 2467
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	3 cut(s)	324, 608, 1993
CaiI	CAGNNNCTG	2 cut(s)	199, 1735
CfoI	GCGC	3 cut(s)	1194, 2302, 2343
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	1969, 2449, 2523, 2657
CsiI	ACCWGGT	1 cut(s)	471
Csp6I	GTAC	4 cut(s)	246, 1727, 2034, 2454
CspAI	ACCGGT	1 cut(s)	106
CviQI	GTAC	4 cut(s)	246, 1727, 2034, 2454
DpnI	GATC	9 cut(s)	612, 1125, 1152, 1231, 1596, 2001, 2145, 2586, 2621
DpnII	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
EaeI	YGGCCR	2 cut(s)	2755, 2856
Eam1104I	CTCTTC	3 cut(s)	111, 2241, 2821
EarI	CTCTTC	3 cut(s)	111, 2241, 2821
Eco147I	AGGCCT	1 cut(s)	794
Eco32I	GATATC	2 cut(s)	1204, 2806
Eco47I	GGWCC	3 cut(s)	1969, 2523, 2657
Eco57I	CTGAAG	2 cut(s)	2222, 2646
Eco81I	CCTNAGG	2 cut(s)	639, 1736
Eco88I	CYCGRG	1 cut(s)	2211
Eco91I	GGTNACC	1 cut(s)	1922
EcoO65I	GGTNACC	1 cut(s)	1922
EcoRI	GAATTC	1 cut(s)	1948
EcoRII	CCWGG	8 cut(s)	471, 1029, 1051, 1059, 1458, 1612, 1926, 2441
EcoRV	GATATC	2 cut(s)	1204, 2806
EcoT22I	ATGCAT	1 cut(s)	549
FalI	AAGNNNNNCTT	8 cut(s)	612, 644, 1009, 1041, 2882, 2914, 2914, 2946
FaqI	GGGAC	2 cut(s)	230, 2641
FauNDI	CATATG	2 cut(s)	1995, 2794
FokI	GGATG	9 cut(s)	600, 621, 1389, 1400, 1736, 1878, 2021, 2231, 2474
FspBI	CTAG	6 cut(s)	557, 753, 945, 966, 1196, 2043
GlaI	GCGC	3 cut(s)	1193, 2301, 2342
GsuI	CTGGAG	2 cut(s)	1881, 1949
HaeII	RGCGCY	1 cut(s)	2303
HaeIII	GGCC	5 cut(s)	563, 794, 2450, 2757, 2858
HapII	CCGG	2 cut(s)	42, 107
HhaI	GCGC	3 cut(s)	1194, 2302, 2343
Hin6I	GCGC	3 cut(s)	1192, 2300, 2341
HinP1I	GCGC	3 cut(s)	1192, 2300, 2341
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	3 cut(s)	284, 707, 2837
HpaII	CCGG	2 cut(s)	42, 107
HphI	GGTGA	3 cut(s)	178, 1863, 2699
Hpy166II	GTNNAC	8 cut(s)	572, 646, 758, 769, 1969, 1984, 2180, 2231
Hpy8I	GTNNAC	8 cut(s)	572, 646, 758, 769, 1969, 1984, 2180, 2231
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	163, 1890, 1999, 2670
HpyCH4III	ACNGT	5 cut(s)	603, 804, 1451, 1988, 2693
HpyCH4IV	ACGT	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	276
HspAI	GCGC	3 cut(s)	1192, 2300, 2341
Kzo9I	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
LguI	GCTCTTC	2 cut(s)	111, 2821
LmnI	GCTCC	5 cut(s)	671, 1052, 1284, 1326, 1737
Lsp1109I	GCAGC	9 cut(s)	450, 674, 943, 1068, 1126, 2335, 2350, 2483, 2648
LweI	GCATC	7 cut(s)	381, 534, 947, 1856, 2002, 2060, 2360
MabI	ACCWGGT	1 cut(s)	471
MaeI	CTAG	6 cut(s)	557, 753, 945, 966, 1196, 2043
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	6 cut(s)	174, 1438, 1855, 1922, 2398, 2687
MalI	GATC	9 cut(s)	612, 1125, 1152, 1231, 1596, 2001, 2145, 2586, 2621
MboI	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
MfeI	CAATTG	1 cut(s)	812
MflI	RGATCY	4 cut(s)	610, 1123, 1594, 2619
MhlI	GDGCHC	2 cut(s)	1114, 1323
MlsI	TGGCCA	2 cut(s)	2757, 2858
MluNI	TGGCCA	2 cut(s)	2757, 2858
MlyI	GAGTC	3 cut(s)	212, 2551, 2916
MmeI	TCCRAC	1 cut(s)	2550
Mox20I	TGGCCA	2 cut(s)	2757, 2858
Mph1103I	ATGCAT	1 cut(s)	549
MroXI	GAANNNNTTC	3 cut(s)	2235, 2557, 2670
MscI	TGGCCA	2 cut(s)	2757, 2858
MslI	CAYNNNNRTG	2 cut(s)	653, 1775
Msp20I	TGGCCA	2 cut(s)	2757, 2858
MspA1I	CMGCKG	4 cut(s)	164, 463, 541, 1373
MspI	CCGG	2 cut(s)	42, 107
MspR9I	CCNGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
MunI	CAATTG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
NdeI	CATATG	2 cut(s)	1995, 2794
NdeII	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
NlaIV	GGNNCC	4 cut(s)	537, 1556, 1596, 2392
NmeAIII	GCCGAG	1 cut(s)	2563
NmuCI	GTSAC	2 cut(s)	2398, 2687
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	369
PaeR7I	CTCGAG	1 cut(s)	2211
PceI	AGGCCT	1 cut(s)	794
PciI	ACATGT	1 cut(s)	365
PciSI	GCTCTTC	2 cut(s)	111, 2821
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	3 cut(s)	2235, 2557, 2670
PfeI	GAWTC	7 cut(s)	257, 1000, 1217, 1358, 1691, 1760, 2918
PinAI	ACCGGT	1 cut(s)	106
PleI	GAGTC	3 cut(s)	212, 2550, 2915
PpsI	GAGTC	3 cut(s)	212, 2550, 2915
PscI	ACATGT	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	2521
Psp6I	CCWGG	8 cut(s)	471, 1029, 1051, 1059, 1458, 1612, 1926, 2441
PspEI	GGTNACC	1 cut(s)	1922
PspGI	CCWGG	8 cut(s)	471, 1029, 1051, 1059, 1458, 1612, 1926, 2441
PspN4I	GGNNCC	4 cut(s)	537, 1556, 1596, 2392
PspPI	GGNCC	4 cut(s)	1969, 2449, 2523, 2657
PstI	CTGCAG	1 cut(s)	569
PstNI	CAGNNNCTG	2 cut(s)	199, 1735
PsuI	RGATCY	4 cut(s)	610, 1123, 1594, 2619
PvuII	CAGCTG	2 cut(s)	463, 1373
RsaI	GTAC	4 cut(s)	247, 1728, 2035, 2455
RsaNI	GTAC	4 cut(s)	246, 1727, 2034, 2454
RseI	CAYNNNNRTG	2 cut(s)	653, 1775
SapI	GCTCTTC	2 cut(s)	111, 2821
Sau3AI	GATC	9 cut(s)	610, 1123, 1150, 1229, 1594, 1999, 2143, 2584, 2619
Sau96I	GGNCC	4 cut(s)	1969, 2449, 2523, 2657
SchI	GAGTC	3 cut(s)	212, 2551, 2916
ScrFI	CCNGG	8 cut(s)	473, 1031, 1053, 1061, 1460, 1614, 1928, 2443
SduI	GDGCHC	2 cut(s)	1114, 1323
SexAI	ACCWGGT	1 cut(s)	471
SfaNI	GCATC	7 cut(s)	381, 534, 947, 1856, 2002, 2060, 2360
SfcI	CTRYAG	1 cut(s)	565
Sfr274I	CTCGAG	1 cut(s)	2211
SinI	GGWCC	3 cut(s)	1969, 2523, 2657
SlaI	CTCGAG	1 cut(s)	2211
SmiMI	CAYNNNNRTG	2 cut(s)	653, 1775
SmlI	CTYRAG	4 cut(s)	57, 704, 897, 2211
SmoI	CTYRAG	4 cut(s)	57, 704, 897, 2211
SpeI	ACTAGT	2 cut(s)	556, 752
SseBI	AGGCCT	1 cut(s)	794
SsiI	CCGC	4 cut(s)	82, 164, 539, 1646
SspI	AATATT	2 cut(s)	1272, 1808
SspMI	CTAG	6 cut(s)	557, 753, 945, 966, 1196, 2043
StuI	AGGCCT	1 cut(s)	794
StyD4I	CCNGG	8 cut(s)	471, 1029, 1051, 1059, 1458, 1612, 1926, 2441
TaaI	ACNGT	5 cut(s)	603, 804, 1451, 1988, 2693
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	7 cut(s)	409, 438, 1153, 1228, 2073, 2212, 2434
TatI	WGTACW	1 cut(s)	1726
TauI	GCSGC	2 cut(s)	85, 1649
TfiI	GAWTC	7 cut(s)	257, 1000, 1217, 1358, 1691, 1760, 2918
TscAI	CASTG	3 cut(s)	324, 608, 1993
TseFI	GTSAC	2 cut(s)	2398, 2687
TseI	GCWGC	9 cut(s)	463, 662, 956, 1056, 1139, 2338, 2348, 2471, 2636
Tsp45I	GTSAC	2 cut(s)	2398, 2687
TspGWI	ACGGA	3 cut(s)	2036, 2281, 2730
TspRI	CASTG	3 cut(s)	324, 608, 1993
VpaK11BI	GGWCC	3 cut(s)	1969, 2523, 2657
XapI	RAATTY	7 cut(s)	226, 745, 1430, 1617, 1817, 1948, 2666
XceI	RCATGY	1 cut(s)	369
XhoI	CTCGAG	1 cut(s)	2211
XmnI	GAANNNNTTC	3 cut(s)	2235, 2557, 2670
XspI	CTAG	6 cut(s)	557, 753, 945, 966, 1196, 2043
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.