Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004284

Physical Location & Seq

Genomic Coordinates Forward (+)

5267990 .. 5270147

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAATATGGCGATATCGGTGGCCGTCGCCAACTCTTCCCTTTTCACGTCGGTGGCGGAAAAGCCTCCGGTGGGACCTCCAGGGTACATCTCCATTTCGAGAAAGAGGTTCATGAACTTGAAGAACCTAGACAGTTTCAATGGAGCTGAAAGAATGAACTCTCGGGTGGACTCAATGAGAGCTTCTTCTCCCACTCATATAAAGCCCTCATCTTTTCTGAAAGAAGACTGGATTCTTCATCACCCATCAGCCTTGGACATGTTTGAGCAGATTATCGATGCTTCGAAAGGGAAGCAAATAGTTATGTTTTTGGACTATGACGGCACACTGTCACCCATAGTTGAAGACCCAGATCGAGCTTTCATGTCTGATGCAATGAGAAAGACAGTGAAGAAAGTTGCTAGATGTTTTCCCACTGCCATAGTGAGTGGAAGATGCAGAGATAAGGTTTACAAATTTGTAAGGTTGGCAGAGCTGTACTATGCTGGTAGCCATGGAATGGATATTCAAGGTCCAGCGAAAGGTTCCAAATACATGAAGGTTTGTCAAGGTGTTCTTTGCCAGCCAGCAAGTGAGTTCCTTCCAATGATTGATGAGGTTTACAGACTGCTTGTTGACAAGACCAAATCGACTCCTGGAGCCAAAGTGGAGAACAACAAATTCTGCCTCTCTGTGCACTTTCGATGTGTTGATGAAAAGAAATGGAACGAACTGTTCATGCAAGTTAGATCAATTCTGAAGGAGTATTCAATGCTCAAACTTACCCAAGGAAGAAAGGTCTTAGAAATCCGTCCAACCATCAAATGGGACAAGGGGAAGGCTCTTGAATTTATACTGGAGTCACTTGGATATGCCAATTGCACGGATGTATTTCCTGTATATATTGGAGATGATCGAACGGATGAGGATGCATTCAAGGTATTAAGAGAAAGAGGACAAGGTTTTGGCATTTTGGTGTCAAAAGTTCCCAAGGAAACCAACGCAACTTATTCTTTACAAGAACCAGCTGAGGTGAGGGGACTTTCTTCAGAGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

347

Amino Acids

38.94

Weight (kDa)

8.98

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	103 - 335	1.8e-75	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22210 AT1G78090 AT1G78090 AT2G22190 AT2G22190 AT4G39770 AT4G39770 AT5G10100 AT5G10100 AT5G10100 AT5G10100 AT5G65140 AT5G65140 AT5G65140
fragaria_vesca	FvH4_1g21200 FvH4_1g21200 FvH4_1g21200 FvH4_1g21200
malus_domestica	MD15G1326700.v1.1
prunus_persica	Prupe.6G182400_v2.0.a1
pyrus_communis	pycom01g05510 pycom15g28800
rosa_chinensis	RchiOBHm_Chr2g0115021
rosa_laevigata	RLG00000018138
rosa_multiflora	Rmu_sc0000784.1_g000004
rosa_roxburghii	Rroxscaffold_2G00130490
rosa_rugosa	Rorug02G0192300
rosa_samantha	Rh2AG250900 Rh2BG260300 Rh2CG255200 Rh2DG259000
rosa_wichuraiana	Rw2G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	499, 804
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	3 cut(s)	455, 659, 827
AcuI	CTGAAG	2 cut(s)	758, 1011
AfaI	GTAC	2 cut(s)	86, 479
AfiI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	7 cut(s)	121, 139, 344, 509, 750, 827, 916
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	2 cut(s)	79, 634
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	146, 182, 359, 475, 1007
AluI	AGCT	5 cut(s)	146, 182, 359, 475, 1007
Alw21I	GWGCWC	1 cut(s)	678
Alw44I	GTGCAC	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	674
ApoI	RAATTY	3 cut(s)	455, 659, 827
AspS9I	GGNCC	2 cut(s)	74, 512
AsuHPI	GGTGA	3 cut(s)	233, 324, 1024
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	2 cut(s)	74, 512
BaeGI	GKGCMC	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	231, 351
Bbv12I	GWGCWC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	1008
BccI	CCATC	2 cut(s)	253, 806
BceAI	ACGGC	2 cut(s)	8, 337
BciT130I	CCWGG	2 cut(s)	81, 636
BfaI	CTAG	2 cut(s)	128, 402
Bme1390I	CCNGG	2 cut(s)	81, 636
Bme18I	GGWCC	2 cut(s)	74, 512
BmeT110I	CYCGRG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	74, 512
BmiI	GGNNCC	3 cut(s)	75, 526, 640
BmrFI	CCNGG	2 cut(s)	81, 636
BmsI	GCATC	4 cut(s)	268, 361, 425, 898
BpiI	GAAGAC	2 cut(s)	231, 351
BpmI	CTGGAG	3 cut(s)	63, 657, 857
Bpu10I	CCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
Bse1I	ACTGG	2 cut(s)	233, 840
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	81, 636
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BseGI	GGATG	3 cut(s)	871, 907, 913
BseLI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	999
BseNI	ACTGG	2 cut(s)	233, 840
BseSI	GKGCMC	1 cut(s)	678
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	3 cut(s)	87, 821, 1032
BslI	CCNNNNNNNGG	4 cut(s)	71, 499, 521, 804
BsmFI	GGGAC	3 cut(s)	87, 821, 1032
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	352, 728, 892
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	1000
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	75, 526, 640
BspT104I	TTCGAA	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	233, 840
BssECI	CCNNGG	5 cut(s)	80, 252, 493, 766, 969
BssMI	GATC	3 cut(s)	352, 728, 892
BssT1I	CCWWGG	4 cut(s)	252, 493, 766, 969
Bst2UI	CCWGG	2 cut(s)	81, 636
Bst4CI	ACNGT	4 cut(s)	134, 330, 388, 714
Bst6I	CTCTTC	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	563, 567
BstDEI	CTNAG	2 cut(s)	781, 1008
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	871, 907, 913
BstKTI	GATC	3 cut(s)	355, 731, 895
BstMBI	GATC	3 cut(s)	352, 728, 892
BstNI	CCWGG	2 cut(s)	81, 636
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	79, 634
BstSLI	GKGCMC	1 cut(s)	678
BstV2I	GAAGAC	2 cut(s)	231, 351
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	493
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	871, 907, 913
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	326, 393, 414
Cac8I	GCNNGC	2 cut(s)	563, 567
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	74, 512
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	85, 478
CviAII	CATG	6 cut(s)	112, 259, 364, 494, 535, 718
CviQI	GTAC	2 cut(s)	85, 478
DdeI	CTNAG	2 cut(s)	781, 1008
DpnI	GATC	3 cut(s)	354, 730, 894
DpnII	GATC	3 cut(s)	352, 728, 892
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	4 cut(s)	252, 493, 766, 969
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	74, 512
Eco57I	CTGAAG	2 cut(s)	758, 1011
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	79, 634
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	4 cut(s)	252, 493, 766, 969
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	4 cut(s)	252, 493, 766, 969
FaeI	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	3 cut(s)	87, 821, 1032
FatI	CATG	6 cut(s)	111, 258, 363, 493, 534, 717
FokI	GGATG	3 cut(s)	878, 914, 920
FspBI	CTAG	2 cut(s)	128, 402
GsuI	CTGGAG	3 cut(s)	63, 657, 857
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	4 cut(s)	170, 232, 631, 839
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	3 cut(s)	233, 324, 1024
Hpy166II	GTNNAC	5 cut(s)	169, 451, 601, 616, 676
Hpy188I	TCNGA	4 cut(s)	219, 370, 738, 1030
Hpy188III	TCNNGA	3 cut(s)	99, 112, 824
Hpy8I	GTNNAC	5 cut(s)	169, 451, 601, 616, 676
Hpy99I	CGWCG	2 cut(s)	29, 52
HpyAV	CCTTC	4 cut(s)	532, 590, 733, 811
HpyCH4III	ACNGT	4 cut(s)	134, 330, 388, 714
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	374, 438, 676, 721, 861, 911
HpyF3I	CTNAG	2 cut(s)	781, 1008
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
Kzo9I	GATC	3 cut(s)	352, 728, 892
LmnI	GCTCC	2 cut(s)	143, 638
LweI	GCATC	4 cut(s)	268, 361, 425, 898
MaeI	CTAG	2 cut(s)	128, 402
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	330, 840
MalI	GATC	3 cut(s)	354, 730, 894
MboI	GATC	3 cut(s)	352, 728, 892
MfeI	CAATTG	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	5 cut(s)	455, 659, 732, 827, 856
MlyI	GAGTC	3 cut(s)	164, 625, 848
MmeI	TCCRAC	1 cut(s)	818
Mph1103I	ATGCAT	1 cut(s)	913
MseI	TTAA	1 cut(s)	923
MslI	CAYNNNNRTG	2 cut(s)	50, 953
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	81, 636
MunI	CAATTG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	81, 636
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	352, 728, 892
NlaIII	CATG	6 cut(s)	115, 262, 367, 497, 538, 721
NlaIV	GGNNCC	3 cut(s)	75, 526, 640
NmuCI	GTSAC	2 cut(s)	330, 840
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	258
PctI	GAATGC	1 cut(s)	911
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	2 cut(s)	499, 804
PfoI	TCCNGGA	1 cut(s)	634
PleI	GAGTC	3 cut(s)	164, 625, 847
PpsI	GAGTC	3 cut(s)	164, 625, 847
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	79, 634
PspGI	CCWGG	2 cut(s)	79, 634
PspN4I	GGNNCC	3 cut(s)	75, 526, 640
PspPI	GGNCC	2 cut(s)	74, 512
PspPPI	RGGWCCY	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	86, 479
RsaNI	GTAC	2 cut(s)	85, 478
RseI	CAYNNNNRTG	2 cut(s)	50, 953
SaqAI	TTAA	1 cut(s)	923
Sau3AI	GATC	3 cut(s)	352, 728, 892
Sau96I	GGNCC	2 cut(s)	74, 512
SchI	GAGTC	3 cut(s)	164, 625, 848
ScrFI	CCNGG	2 cut(s)	81, 636
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	4 cut(s)	268, 361, 425, 898
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	2 cut(s)	74, 512
SmiMI	CAYNNNNRTG	2 cut(s)	50, 953
Sse9I	AATT	5 cut(s)	455, 659, 732, 827, 856
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	128, 402
StyD4I	CCNGG	2 cut(s)	79, 634
StyI	CCWWGG	4 cut(s)	252, 493, 766, 969
TaaI	ACNGT	4 cut(s)	134, 330, 388, 714
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	7 cut(s)	98, 276, 284, 355, 629, 682, 895
TasI	AATT	5 cut(s)	455, 659, 732, 827, 856
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	923
Tru9I	TTAA	1 cut(s)	923
TscAI	CASTG	3 cut(s)	333, 393, 421
TseFI	GTSAC	2 cut(s)	330, 840
Tsp45I	GTSAC	2 cut(s)	330, 840
TspDTI	ATGAA	9 cut(s)	17, 100, 128, 170, 227, 352, 551, 706, 708
TspGWI	ACGGA	3 cut(s)	779, 878, 914
TspRI	CASTG	3 cut(s)	333, 393, 421
Van91I	CCANNNNNTGG	2 cut(s)	499, 804
VneI	GTGCAC	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	74, 512
XapI	RAATTY	3 cut(s)	455, 659, 827
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XspI	CTAG	2 cut(s)	128, 402
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.