Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008632

Physical Location & Seq

Genomic Coordinates Forward (+)

6903188 .. 6908691

Gene Structure 5504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGTTAGAAGTTTGCCTTTTTCTGTCAAGGAAAACAAAAAAGCCGGCTTTCGCAAACGTTGAAAACGCCGAAAAGCAGAGAACGCCAAAAAAGAAAGAGAAAGGCTTTGACAGCTTGGACTTCAAAACCTCCTGCAGCCTGCTAATAAGTCAGCTCGTACGGCCCTCCGTCGTTGCTTTCTATTTTCCCTCCTTAATTATTTATTTACTCTCTCTCCTCTCTTTCTGCAATTCTTCCAACTCTCCCATTGATCAATACAAACTTGAAGAAATCTTAAGTATTATGGCCACTCTCTCGCACGCGATCGCCCCGCCGGGACTCGGCCCCCACCGCCGCGCTTCTCACGGATTCTCTCCGCCGTCTCTGAGACTACTGACTACTTCCAGTGGAGTCGCCAAGAACAGCAGCCGCGTCTTCGCTCAGAGCAAGAGCCATGGCCGGCAGCAGATCGATTTCAGTGATCCCGACTGGAAATCCAAGTTCCAGAAGGATTTCGAGAAGCGGTTTAACATCCCTCACATCACTGATGTCTTCCCTGACGCCGTTCCCATTCCTTCCACCTTCTGCTTACAAATGAGGACTCCGGTGATTGAAGACTTTGCAGGTGGGTACCCGTCGGACGAAGAGTGGCACGGCTACATAAATAACAATGACCGGGTACTCCTTAAGACCATATACTACTCGTCGCATACGTCTGCTGGTGCTGAATGCATTGATCCTAATTGTACTTGGGTGGAGCAATGGGTTCATCGTGCTGGGCCTCGGGAAAAAATATATTTTAAACCAGAAGAAGTGAAAGCAGCAATTGTAACATGCGGAGGGCTCTGCCCTGGTCTTAATGACGTCATCAGACAGATCGTCATTACACTTGAAATATACGGTGTCAAACAGATTGTGGGGATTCCTTATGGTTACCGCGGATTTTCTGAAAATGAATTAGCTGAACTGCCACTATCTAGGAAAGTGGTTCAAAATGTTCATCTTTCTGGTGGAAGCTTGTTAGGAGTTTCACGTGGAGGTCCCAGCGTTAGTGACATTGTGGACAGTTTGGAGGAAAGAGGGATCAACATGGTTTTTATTTTGGGCGGAAACGGCACACATGCTGGAGCCGATGCAATACACAATGAGTGCCGTAAAAGACAGTTAAGAGTGGCTGTAGTTGGTGTGCCGAAAACCATAGACAATGATATTTTGCTGATGGACAAAACTTTTGGTTTCGACACAGCTGTTGAAGAAGCTCAACGGGCAATAAATTCAGCATACATTGAGGCACATAGTGCTTACCATGGCGTTGGCATTGTTAAATTGATGGGTCGTAGCAGTGGATTCATAGCAATGCATGCATCCCTAGCTAGTGGACAAATTGACATATGTTTGATACCTGAGGTACCTTTTCAAATACATGGCCCTCATGGTATTTTGCACCATCTAAAATACCTAATTCAAACAAAGGGATCAGCTGTGGTCTGCGTAGCAGAGGGAGCAGGGCAGAATTTACTAGAGAAAACCAATGCTACTGATGCATCTGGAAATATGGTATTTGGGGATATTGGCGTACATATTCAGCAAGAGACAAAAAAGTATTTTAAAGAGGCTGGTGTTCCCGTTGACGTGAAGTATATAGACCCCACATACATGATCCGTGCATGTCGTGCAAATGCATCAGACGGAATACTTTGCGCTGTATTAGGGCAAAATGCTGTTCACGGGGCGTTCGCTGGATACAGTGGAATCACAGTTGGCACTTGCAACACTCATTATGTATACCTTCCAATTCCTGAGGTCATATCTCATCCCAGGCTGGTGGATCCGAACAGCCGAATGTGGCATCGTTGCTTGACTTCCACAGGTCAGCCGGACTTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003872 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008443 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0061615 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

623

Amino Acids

68.26

Weight (kDa)

7.6

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22480
fragaria_vesca	FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980
malus_domestica	MD01G1037400.v1.1 MD15G1315500.v1.1
prunus_persica	Prupe.6G196200_v2.0.a1
pyrus_communis	pycom01g06530 pycom15g27870
rosa_chinensis	RchiOBHm_Chr2g0111921
rosa_laevigata	RLG00000017938
rosa_multiflora	Rmu_sc0005679.1_g000013 Rmu_sc0006947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131990
rosa_rugosa	Rorug02G0177100
rosa_samantha	Rh2AG229500 Rh2BG242300 Rh2CG233600 Rh2DG237200
rosa_wichuraiana	Rw2G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
AatII	GACGTC	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	593
Acc65I	GGTACC	2 cut(s)	609, 1387
AccB1I	GGYRCC	2 cut(s)	609, 1387
AccI	GTMKAC	1 cut(s)	1764
AccII	CGCG	4 cut(s)	302, 336, 411, 918
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	7 cut(s)	455, 710, 1070, 1462, 1633, 1802, 1815
AcoI	YGGCCR	2 cut(s)	285, 436
AcsI	RAATTY	2 cut(s)	1252, 1492
AcvI	CACGTG	1 cut(s)	1013
AcyI	GRCGYC	2 cut(s)	540, 843
AdeI	CACNNNGTG	1 cut(s)	1277
AfaI	GTAC	6 cut(s)	159, 611, 660, 727, 1389, 1557
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflII	CTTAAG	2 cut(s)	274, 665
AgsI	TTSAA	9 cut(s)	62, 124, 266, 593, 872, 971, 1232, 1397, 1445
AhdI	GACNNNNNGTC	1 cut(s)	857
AjiI	CACGTC	1 cut(s)	1612
AjnI	CCWGG	2 cut(s)	829, 1796
AluBI	AGCT	8 cut(s)	114, 154, 941, 996, 1226, 1238, 1352, 1460
AluI	AGCT	8 cut(s)	114, 154, 941, 996, 1226, 1238, 1352, 1460
Alw26I	GTCTC	3 cut(s)	361, 366, 1565
AlwI	GGATC	7 cut(s)	455, 710, 1070, 1462, 1633, 1802, 1815
Ama87I	CYCGRG	1 cut(s)	762
AoxI	GGCC	6 cut(s)	161, 285, 322, 436, 758, 1405
ApeKI	GCWGC	4 cut(s)	135, 405, 442, 800
ApoI	RAATTY	2 cut(s)	1252, 1492
ArsI	GACNNNNNNTTYG	2 cut(s)	1193, 1225
AsiSI	GCGATCGC	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	491
Asp718I	GGTACC	2 cut(s)	609, 1387
AspLEI	GCGC	2 cut(s)	338, 1682
AspS9I	GGNCC	5 cut(s)	162, 323, 758, 1019, 1406
AsuC2I	CCSGG	2 cut(s)	315, 656
AsuHPI	GGTGA	1 cut(s)	598
AvaI	CYCGRG	1 cut(s)	762
AvaII	GGWCC	1 cut(s)	1019
AxyI	CCTNAGG	2 cut(s)	1383, 1779
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	1807
BanI	GGYRCC	2 cut(s)	609, 1387
BanII	GRGCYC	1 cut(s)	825
BbrPI	CACGTG	1 cut(s)	1013
BbsI	GAAGAC	3 cut(s)	406, 523, 600
BbvI	GCAGC	4 cut(s)	147, 417, 454, 812
BccI	CCATC	3 cut(s)	1192, 1303, 1434
BceAI	ACGGC	6 cut(s)	176, 343, 527, 649, 1108, 1116
BciT130I	CCWGG	2 cut(s)	831, 1798
BciVI	GTATCC	1 cut(s)	1715
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	315, 656
BcoDI	GTCTC	3 cut(s)	361, 366, 1565
BfaI	CTAG	5 cut(s)	957, 1349, 1353, 1499, 1867
BfmI	CTRYAG	2 cut(s)	133, 1155
BfrI	CTTAAG	2 cut(s)	274, 665
BfuAI	ACCTGC	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	1715
BisI	GCNGC	6 cut(s)	136, 334, 406, 409, 443, 801
BlsI	GCNGC	6 cut(s)	137, 335, 407, 410, 444, 802
Bme1390I	CCNGG	4 cut(s)	315, 656, 831, 1798
Bme18I	GGWCC	1 cut(s)	1019
BmeRI	GACNNNNNGTC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	762
BmgBI	CACGTC	1 cut(s)	1612
BmgT120I	GGNCC	5 cut(s)	162, 323, 758, 1019, 1406
BmiI	GGNNCC	6 cut(s)	325, 611, 1021, 1108, 1389, 1809
BmrFI	CCNGG	4 cut(s)	315, 656, 831, 1798
BmsI	GCATC	6 cut(s)	1102, 1352, 1510, 1532, 1670, 1837
BpiI	GAAGAC	3 cut(s)	406, 523, 600
BpmI	CTGGAG	1 cut(s)	1125
BpuMI	CCSGG	2 cut(s)	315, 656
Bsa29I	ATCGAT	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	1013
BsaHI	GRCGYC	2 cut(s)	540, 843
BsaJI	CCNNGG	6 cut(s)	433, 761, 829, 916, 1285, 1796
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	2 cut(s)	43, 438
Bse1I	ACTGG	2 cut(s)	384, 473
Bse21I	CCTNAGG	2 cut(s)	1383, 1779
Bse3DI	GCAATG	2 cut(s)	746, 1341
BseBI	CCWGG	2 cut(s)	831, 1798
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	6 cut(s)	433, 761, 829, 916, 1285, 1796
BseGI	GGATG	3 cut(s)	510, 1343, 1792
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	746, 1341
BseMII	CTCAG	4 cut(s)	356, 434, 1374, 1770
BseNI	ACTGG	2 cut(s)	384, 473
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	4 cut(s)	147, 417, 454, 812
BseYI	CCCAGC	2 cut(s)	755, 1022
Bsh1236I	CGCG	4 cut(s)	302, 336, 411, 918
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	6 cut(s)	163, 287, 324, 438, 760, 1407
BshNI	GGYRCC	2 cut(s)	609, 1387
BshVI	ATCGAT	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	762
BsiSI	CCGG	6 cut(s)	44, 314, 439, 584, 655, 1856
BsiWI	CGTACG	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	330, 1005
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	3 cut(s)	361, 366, 1565
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	330, 1005
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	6 cut(s)	163, 287, 324, 438, 760, 1407
BsoBI	CYCGRG	1 cut(s)	762
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp19I	CCATGG	2 cut(s)	433, 1285
BspANI	GGCC	6 cut(s)	163, 287, 324, 438, 760, 1407
BspCNI	CTCAG	4 cut(s)	357, 433, 1375, 1771
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	4 cut(s)	302, 336, 411, 918
BspLI	GGNNCC	6 cut(s)	325, 611, 1021, 1108, 1389, 1809
BspMAI	CTGCAG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	7 cut(s)	455, 710, 1070, 1462, 1633, 1802, 1815
BspT107I	GGYRCC	2 cut(s)	609, 1387
BspTI	CTTAAG	2 cut(s)	274, 665
BsrDI	GCAATG	2 cut(s)	746, 1341
BsrFI	RCCGGY	2 cut(s)	43, 438
BsrI	ACTGG	2 cut(s)	384, 473
BssAI	RCCGGY	2 cut(s)	43, 438
BssECI	CCNNGG	6 cut(s)	433, 761, 829, 916, 1285, 1796
BssNAI	GTATAC	1 cut(s)	1765
BssNI	GRCGYC	2 cut(s)	540, 843
BssT1I	CCWWGG	2 cut(s)	433, 1285
Bst1107I	GTATAC	1 cut(s)	1765
Bst2UI	CCWGG	2 cut(s)	831, 1798
Bst4CI	ACNGT	5 cut(s)	881, 1046, 1143, 1727, 1738
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	2 cut(s)	540, 843
BstAFI	CTTAAG	2 cut(s)	274, 665
BstAPI	GCANNNNNTGC	3 cut(s)	1277, 1340, 1652
BstBAI	YACGTR	1 cut(s)	1013
BstC8I	GCNNGC	5 cut(s)	45, 140, 300, 440, 1341
BstDEI	CTNAG	4 cut(s)	365, 420, 1383, 1779
BstDSI	CCRYGG	3 cut(s)	433, 916, 1285
BstEII	GGTNACC	1 cut(s)	911
BstF5I	GGATG	3 cut(s)	510, 1343, 1792
BstFNI	CGCG	4 cut(s)	302, 336, 411, 918
BstHHI	GCGC	2 cut(s)	338, 1682
BstMAI	GTCTC	3 cut(s)	361, 366, 1565
BstMCI	CGRYCG	1 cut(s)	306
BstNI	CCWGG	2 cut(s)	831, 1798
BstNSI	RCATGY	4 cut(s)	816, 1103, 1343, 1650
BstPI	GGTNACC	1 cut(s)	911
BstSCI	CCNGG	4 cut(s)	313, 654, 829, 1796
BstSFI	CTRYAG	2 cut(s)	133, 1155
BstUI	CGCG	4 cut(s)	302, 336, 411, 918
BstV1I	GCAGC	4 cut(s)	147, 417, 454, 812
BstV2I	GAAGAC	3 cut(s)	406, 523, 600
BstX2I	RGATCY	1 cut(s)	1807
BstXI	CCANNNNNNTGG	2 cut(s)	1292, 1804
BstYI	RGATCY	1 cut(s)	1807
BstZ17I	GTATAC	1 cut(s)	1765
Bsu15I	ATCGAT	1 cut(s)	450
Bsu36I	CCTNAGG	2 cut(s)	1383, 1779
BsuI	GTATCC	1 cut(s)	1715
BsuRI	GGCC	6 cut(s)	163, 287, 324, 438, 760, 1407
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	3 cut(s)	433, 916, 1285
BtrI	CACGTC	1 cut(s)	1612
BtsCI	GGATG	3 cut(s)	510, 1343, 1792
BtsI	GCAGTG	1 cut(s)	1327
BtsIMutI	CAGTG	5 cut(s)	391, 463, 522, 1327, 1732
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	5 cut(s)	45, 140, 300, 440, 1341
CfoI	GCGC	2 cut(s)	338, 1682
Cfr10I	RCCGGY	2 cut(s)	43, 438
Cfr13I	GGNCC	5 cut(s)	162, 323, 758, 1019, 1406
Cfr42I	CCGCGG	1 cut(s)	919
ClaI	ATCGAT	1 cut(s)	450
CseI	GACGC	2 cut(s)	400, 548
Csp6I	GTAC	6 cut(s)	158, 610, 659, 726, 1388, 1556
CviQI	GTAC	6 cut(s)	158, 610, 659, 726, 1388, 1556
DdeI	CTNAG	4 cut(s)	365, 420, 1383, 1779
DraI	TTTAAA	2 cut(s)	781, 1588
DraIII	CACNNNGTG	1 cut(s)	1277
DriI	GACNNNNNGTC	1 cut(s)	857
EaeI	YGGCCR	2 cut(s)	285, 436
Eam1104I	CTCTTC	1 cut(s)	618
Eam1105I	GACNNNNNGTC	1 cut(s)	857
EarI	CTCTTC	1 cut(s)	618
EciI	GGCGGA	2 cut(s)	345, 1101
Eco130I	CCWWGG	2 cut(s)	433, 1285
Eco24I	GRGCYC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	1019
Eco72I	CACGTG	1 cut(s)	1013
Eco81I	CCTNAGG	2 cut(s)	1383, 1779
Eco88I	CYCGRG	1 cut(s)	762
Eco91I	GGTNACC	1 cut(s)	911
EcoO109I	RGGNCCY	1 cut(s)	1019
EcoO65I	GGTNACC	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	829, 1796
EcoT14I	CCWWGG	2 cut(s)	433, 1285
EcoT22I	ATGCAT	5 cut(s)	713, 1341, 1345, 1525, 1663
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	2 cut(s)	433, 1285
Esp3I	CGTCTC	1 cut(s)	366
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	330, 1005
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	1370
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	1764
Fnu4HI	GCNGC	6 cut(s)	136, 334, 406, 409, 443, 801
FokI	GGATG	3 cut(s)	497, 1330, 1779
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	6 cut(s)	136, 334, 406, 409, 443, 801
FspBI	CTAG	5 cut(s)	957, 1349, 1353, 1499, 1867
GlaI	GCGC	2 cut(s)	337, 1681
GluI	GCNGC	6 cut(s)	136, 334, 406, 409, 443, 801
GsaI	CCCAGC	2 cut(s)	759, 1026
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	6 cut(s)	163, 287, 324, 438, 760, 1407
HapII	CCGG	6 cut(s)	44, 314, 439, 584, 655, 1856
HgaI	GACGC	2 cut(s)	400, 548
HhaI	GCGC	2 cut(s)	338, 1682
Hin1I	GRCGYC	2 cut(s)	540, 843
Hin6I	GCGC	2 cut(s)	336, 1680
HinP1I	GCGC	2 cut(s)	336, 1680
HincII	GTYRAC	1 cut(s)	1609
HindII	GTYRAC	1 cut(s)	1609
HindIII	AAGCTT	1 cut(s)	994
HinfI	GANTC	7 cut(s)	318, 348, 390, 580, 901, 1326, 1731
HpaII	CCGG	6 cut(s)	44, 314, 439, 584, 655, 1856
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	5 cut(s)	1042, 1358, 1609, 1705, 1765
Hpy188I	TCNGA	7 cut(s)	366, 423, 619, 851, 928, 1666, 1812
Hpy188III	TCNNGA	6 cut(s)	464, 484, 496, 764, 1527, 1778
Hpy8I	GTNNAC	5 cut(s)	1042, 1358, 1609, 1705, 1765
Hpy99I	CGWCG	3 cut(s)	173, 619, 688
HpyAV	CCTTC	4 cut(s)	481, 564, 571, 1778
HpyCH4III	ACNGT	5 cut(s)	881, 1046, 1143, 1727, 1738
HpyCH4IV	ACGT	5 cut(s)	57, 692, 843, 1012, 1611
HpyF3I	CTNAG	4 cut(s)	365, 420, 1383, 1779
HpySE526I	ACGT	5 cut(s)	57, 692, 843, 1012, 1611
Hsp92I	GRCGYC	2 cut(s)	540, 843
HspAI	GCGC	2 cut(s)	336, 1680
KpnI	GGTACC	2 cut(s)	613, 1391
KroI	GCCGGC	2 cut(s)	43, 438
KroNI	GCCGGC	2 cut(s)	45, 440
Ksp22I	TGATCA	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	919
LmnI	GCTCC	3 cut(s)	736, 1106, 1481
Lsp1109I	GCAGC	4 cut(s)	147, 417, 454, 812
LweI	GCATC	6 cut(s)	1102, 1352, 1510, 1532, 1670, 1837
MaeI	CTAG	5 cut(s)	957, 1349, 1353, 1499, 1867
MaeII	ACGT	5 cut(s)	57, 692, 843, 1012, 1611
MaeIII	GTNAC	3 cut(s)	808, 911, 1031
MboII	GAAGA	8 cut(s)	225, 278, 406, 523, 605, 635, 800, 1244
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	1 cut(s)	1807
MhlI	GDGCHC	1 cut(s)	825
MlsI	TGGCCA	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	3 cut(s)	312, 399, 574
MmeI	TCCRAC	2 cut(s)	261, 597
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	5 cut(s)	713, 1341, 1345, 1525, 1663
MroNI	GCCGGC	2 cut(s)	43, 438
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	9 cut(s)	194, 275, 507, 666, 780, 837, 1145, 1302, 1587
MslI	CAYNNNNRTG	2 cut(s)	1334, 1634
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	3 cut(s)	918, 1226, 1460
MspCI	CTTAAG	2 cut(s)	274, 665
MspI	CCGG	6 cut(s)	44, 314, 439, 584, 655, 1856
MspR9I	CCNGG	4 cut(s)	315, 656, 831, 1798
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	831, 1798
MvnI	CGCG	4 cut(s)	302, 336, 411, 918
NaeI	GCCGGC	2 cut(s)	45, 440
NciI	CCSGG	2 cut(s)	315, 656
NcoI	CCATGG	2 cut(s)	433, 1285
NdeI	CATATG	1 cut(s)	1370
NgoMIV	GCCGGC	2 cut(s)	43, 438
NlaIV	GGNNCC	6 cut(s)	325, 611, 1021, 1108, 1389, 1809
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	1031
NsiI	ATGCAT	5 cut(s)	713, 1341, 1345, 1525, 1663
NspI	RCATGY	4 cut(s)	816, 1103, 1343, 1650
PaeI	GCATGC	1 cut(s)	1343
PaqCI	CACCTGC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	1 cut(s)	689
PctI	GAATGC	1 cut(s)	713
PdiI	GCCGGC	2 cut(s)	45, 440
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	4 cut(s)	348, 901, 1326, 1731
Pfl23II	CGTACG	1 cut(s)	157
PkrI	GCNGC	6 cut(s)	137, 335, 407, 410, 444, 802
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	3 cut(s)	312, 398, 574
PmaCI	CACGTG	1 cut(s)	1013
PmlI	CACGTG	1 cut(s)	1013
PpsI	GAGTC	3 cut(s)	312, 398, 574
Ppu21I	YACGTR	1 cut(s)	1013
PpuMI	RGGWCCY	1 cut(s)	1019
Psp1406I	AACGTT	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	1019
Psp6I	CCWGG	2 cut(s)	829, 1796
PspCI	CACGTG	1 cut(s)	1013
PspEI	GGTNACC	1 cut(s)	911
PspFI	CCCAGC	2 cut(s)	755, 1022
PspGI	CCWGG	2 cut(s)	829, 1796
PspLI	CGTACG	1 cut(s)	157
PspN4I	GGNNCC	6 cut(s)	325, 611, 1021, 1108, 1389, 1809
PspPI	GGNCC	5 cut(s)	162, 323, 758, 1019, 1406
PspPPI	RGGWCCY	1 cut(s)	1019
PstI	CTGCAG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	1807
PvuI	CGATCG	1 cut(s)	306
PvuII	CAGCTG	2 cut(s)	1226, 1460
RgaI	GCGATCGC	1 cut(s)	306
RsaI	GTAC	6 cut(s)	159, 611, 660, 727, 1389, 1557
RsaNI	GTAC	6 cut(s)	158, 610, 659, 726, 1388, 1556
RseI	CAYNNNNRTG	2 cut(s)	1334, 1634
SacII	CCGCGG	1 cut(s)	919
SaqAI	TTAA	9 cut(s)	194, 275, 507, 666, 780, 837, 1145, 1302, 1587
SatI	GCNGC	6 cut(s)	136, 334, 406, 409, 443, 801
Sau96I	GGNCC	5 cut(s)	162, 323, 758, 1019, 1406
SchI	GAGTC	3 cut(s)	312, 399, 574
ScrFI	CCNGG	4 cut(s)	315, 656, 831, 1798
SduI	GDGCHC	1 cut(s)	825
SfaAI	GCGATCGC	1 cut(s)	306
SfaNI	GCATC	6 cut(s)	1102, 1352, 1510, 1532, 1670, 1837
SfcI	CTRYAG	2 cut(s)	133, 1155
Sfr303I	CCGCGG	1 cut(s)	919
SgfI	GCGATCGC	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	919
SinI	GGWCC	1 cut(s)	1019
SmiMI	CAYNNNNRTG	2 cut(s)	1334, 1634
SmlI	CTYRAG	2 cut(s)	274, 665
SmoI	CTYRAG	2 cut(s)	274, 665
SphI	GCATGC	1 cut(s)	1343
SspMI	CTAG	5 cut(s)	957, 1349, 1353, 1499, 1867
StyD4I	CCNGG	4 cut(s)	313, 654, 829, 1796
StyI	CCWWGG	2 cut(s)	433, 1285
TaaI	ACNGT	5 cut(s)	881, 1046, 1143, 1727, 1738
TaiI	ACGT	5 cut(s)	60, 695, 846, 1015, 1614
TaqI	TCGA	3 cut(s)	450, 495, 1218
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	2 cut(s)	336, 411
TfiI	GAWTC	4 cut(s)	348, 901, 1326, 1731
Tru1I	TTAA	9 cut(s)	194, 275, 507, 666, 780, 837, 1145, 1302, 1587
Tru9I	TTAA	9 cut(s)	194, 275, 507, 666, 780, 837, 1145, 1302, 1587
TscAI	CASTG	5 cut(s)	391, 463, 529, 1327, 1732
TseFI	GTSAC	1 cut(s)	1031
TseI	GCWGC	4 cut(s)	135, 405, 442, 800
Tsp45I	GTSAC	1 cut(s)	1031
TspDTI	ATGAA	4 cut(s)	737, 948, 968, 1318
TspGWI	ACGGA	4 cut(s)	157, 360, 1631, 1683
TspRI	CASTG	5 cut(s)	391, 463, 529, 1327, 1732
Vha464I	CTTAAG	2 cut(s)	274, 665
VpaK11BI	GGWCC	1 cut(s)	1019
XapI	RAATTY	2 cut(s)	1252, 1492
XceI	RCATGY	4 cut(s)	816, 1103, 1343, 1650
XmiI	GTMKAC	1 cut(s)	1764
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	5 cut(s)	957, 1349, 1353, 1499, 1867
ZraI	GACGTC	1 cut(s)	844
Zsp2I	ATGCAT	5 cut(s)	713, 1341, 1345, 1525, 1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.