Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006947.1

Orthogroup ID

OG0008632

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 948

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006947.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 509 bp

atgggcactctctcgcatgcgatcgcgcccaggctcgccgccctccaccaccaccgcctccgtcacggtaatggagtattctcctcctcctccgtctcttcttcttctcgaacctcgctctcttcttctgcttcttctgcttcgggattgacgacgaagaagaagagcagcagcgttcgagtcttggccgggatcaagcacaaccaccgcgacctcgatttcagcgatcctgactggaaatcaaagttccagagcgatttcgagaagcgcttcgccatccctcacatcaccgacgtcttccccggcgccgttcccattccctccaccttctgcctcaagatgagaactccggtcatcgaagacttcgccggcggatatccgtccgacgaggagtggcacggttacataaataacaacgatcgcgtacttctcaagactatatactactcgtcacctacgtctgctggtgccgaatgcattgatcctaactgtacttgggtggagcaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003872 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008443 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0061615 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

169

Amino Acids

18.55

Weight (kDa)

8.47

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22480
fragaria_vesca	FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980
malus_domestica	MD01G1037400.v1.1 MD15G1315500.v1.1
prunus_persica	Prupe.6G196200_v2.0.a1
pyrus_communis	pycom01g06530 pycom15g27870
rosa_chinensis	RchiOBHm_Chr2g0111921
rosa_laevigata	RLG00000017938
rosa_multiflora	Rmu_sc0005679.1_g000013 Rmu_sc0006947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131990
rosa_rugosa	Rorug02G0177100
rosa_samantha	Rh2AG229500 Rh2BG242300 Rh2CG233600 Rh2DG237200
rosa_wichuraiana	Rw2G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB1I	GGYRCC	2 cut(s)	305, 467
AccII	CGCG	3 cut(s)	26, 210, 423
AciI	CCGC	4 cut(s)	39, 55, 208, 372
AclWI	GGATC	3 cut(s)	200, 221, 476
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	2 cut(s)	294, 306
AfaI	GTAC	2 cut(s)	426, 493
AfeI	AGCGCT	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	3 cut(s)	200, 221, 476
Aor51HI	AGCGCT	1 cut(s)	269
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	168, 171
AsiSI	GCGATCGC	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	28, 270, 308
AsuC2I	CCSGG	2 cut(s)	190, 303
AsuHPI	GGTGA	2 cut(s)	280, 444
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	305, 467
BbsI	GAAGAC	2 cut(s)	289, 366
BbvI	GCAGC	2 cut(s)	180, 183
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	190, 303
BcoDI	GTCTC	1 cut(s)	100
BfoI	RGCGCY	2 cut(s)	271, 309
BisI	GCNGC	3 cut(s)	39, 169, 172
BlsI	GCNGC	3 cut(s)	40, 170, 173
Bme1390I	CCNGG	3 cut(s)	31, 190, 303
BmiI	GGNNCC	2 cut(s)	307, 469
BmrFI	CCNGG	3 cut(s)	31, 190, 303
BpiI	GAAGAC	2 cut(s)	289, 366
BpuEI	CTTGAG	2 cut(s)	320, 416
BpuMI	CCSGG	2 cut(s)	190, 303
BsaHI	GRCGYC	2 cut(s)	294, 306
BsaJI	CCNNGG	2 cut(s)	29, 301
BsaWI	WCCGGW	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	29, 301
BseGI	GGATG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	4 cut(s)	73, 76, 79, 404
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	180, 183
Bsh1236I	CGCG	3 cut(s)	26, 210, 423
Bsh1285I	CGRYCG	2 cut(s)	24, 421
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	2 cut(s)	305, 467
BsiEI	CGRYCG	2 cut(s)	24, 421
BsiSI	CCGG	4 cut(s)	189, 303, 350, 369
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	21, 192, 226, 418, 481
BspACI	CCGC	4 cut(s)	39, 55, 208, 372
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	3 cut(s)	26, 210, 423
BspLI	GGNNCC	2 cut(s)	307, 469
BspPI	GGATC	3 cut(s)	200, 221, 476
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	305, 467
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	29, 301
BssMI	GATC	5 cut(s)	21, 192, 226, 418, 481
BssNI	GRCGYC	2 cut(s)	294, 306
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	68, 401, 491
Bst6I	CTCTTC	3 cut(s)	103, 127, 158
BstACI	GRCGYC	2 cut(s)	294, 306
BstC8I	GCNNGC	3 cut(s)	18, 36, 370
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	3 cut(s)	26, 210, 423
BstH2I	RGCGCY	2 cut(s)	271, 309
BstHHI	GCGC	3 cut(s)	28, 270, 308
BstKTI	GATC	5 cut(s)	24, 195, 229, 421, 484
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	5 cut(s)	21, 192, 226, 418, 481
BstMCI	CGRYCG	2 cut(s)	24, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	29, 188, 301
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	26, 210, 423
BstV1I	GCAGC	2 cut(s)	180, 183
BstV2I	GAAGAC	2 cut(s)	289, 366
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	18, 36, 370
CfoI	GCGC	3 cut(s)	28, 270, 308
Cfr10I	RCCGGY	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	425, 492
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	2 cut(s)	34, 188
CviKI_1	RGCY	2 cut(s)	34, 188
CviQI	GTAC	2 cut(s)	425, 492
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	5 cut(s)	23, 194, 228, 420, 483
DpnII	GATC	5 cut(s)	21, 192, 226, 418, 481
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	3 cut(s)	103, 127, 158
EarI	CTCTTC	3 cut(s)	103, 127, 158
EciI	GGCGGA	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	1 cut(s)	20
FaiI	YATR	4 cut(s)	18, 407, 440, 442
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	39, 169, 172
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	39, 169, 172
GlaI	GCGC	3 cut(s)	27, 269, 307
GluI	GCNGC	3 cut(s)	39, 169, 172
HaeII	RGCGCY	2 cut(s)	271, 309
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	4 cut(s)	189, 303, 350, 369
HhaI	GCGC	3 cut(s)	28, 270, 308
Hin1I	GRCGYC	2 cut(s)	294, 306
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	3 cut(s)	26, 268, 306
HinP1I	GCGC	3 cut(s)	26, 268, 306
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	4 cut(s)	189, 303, 350, 369
HphI	GGTGA	2 cut(s)	280, 444
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	7 cut(s)	108, 144, 230, 250, 262, 337, 433
Hpy99I	CGWCG	3 cut(s)	157, 296, 389
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	68, 401, 491
HpyCH4IV	ACGT	2 cut(s)	294, 458
HpyCH4V	TGCA	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	294, 458
Hsp92I	GRCGYC	2 cut(s)	294, 306
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	3 cut(s)	26, 268, 306
KasI	GGCGCC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	21, 192, 226, 418, 481
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	2 cut(s)	180, 183
MaeII	ACGT	2 cut(s)	294, 458
MaeIII	GTNAC	3 cut(s)	62, 401, 450
MalI	GATC	5 cut(s)	23, 194, 228, 420, 483
MboI	GATC	5 cut(s)	21, 192, 226, 418, 481
MhlI	GDGCHC	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	479
MreI	CGCCGGCG	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	4 cut(s)	189, 303, 350, 369
MspR9I	CCNGG	3 cut(s)	31, 190, 303
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	3 cut(s)	26, 210, 423
MwoI	GCNNNNNNNGC	1 cut(s)	137
NaeI	GCCGGC	1 cut(s)	370
NarI	GGCGCC	1 cut(s)	306
NciI	CCSGG	2 cut(s)	190, 303
NdeII	GATC	5 cut(s)	21, 192, 226, 418, 481
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	307, 469
NmuCI	GTSAC	2 cut(s)	62, 450
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 222, 455
PctI	GAATGC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	40, 170, 173
Ple19I	CGATCG	2 cut(s)	24, 421
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	307, 469
PvuI	CGATCG	2 cut(s)	24, 421
RgaI	GCGATCGC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	426, 493
RsaNI	GTAC	2 cut(s)	425, 492
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	3 cut(s)	39, 169, 172
Sau3AI	GATC	5 cut(s)	21, 192, 226, 418, 481
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	3 cut(s)	31, 190, 303
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	116, 216, 297, 329, 457, 461
SfaAI	GCGATCGC	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	307
SgfI	GCGATCGC	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	335, 431
SmoI	CTYRAG	2 cut(s)	335, 431
SphI	GCATGC	1 cut(s)	20
SsiI	CCGC	4 cut(s)	39, 55, 208, 372
SspDI	GGCGCC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	29, 188, 301
TaaI	ACNGT	3 cut(s)	68, 401, 491
TaiI	ACGT	2 cut(s)	297, 461
TaqI	TCGA	5 cut(s)	109, 178, 216, 261, 357
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	62, 450
TseI	GCWGC	2 cut(s)	168, 171
Tsp45I	GTSAC	2 cut(s)	62, 450
TspGWI	ACGGA	3 cut(s)	50, 82, 369
XceI	RCATGY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.