Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005679.1

Orthogroup ID

OG0008632

Physical Location & Seq

Genomic Coordinates Forward (+)

62000 .. 66619

Gene Structure 4620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005679.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

atgggcactctctcgcatgcgatcgcgcccaggctcgccgccctccaccaccaccgcctccgtcacggtaatggagtattctcctcctcctccgtctcttcttcttctcgaacctcgctctcttcttcttcttcttctgcttcgggattgacgacgaagaagaagagcagcagcgttcgagtcttggccgggatcaagcacaaccaccgcgacctcgatttcagcgatcctgactggaaatcaaagttccagagcgatttcgagaagcgcttcgccatccctcacatcaccgacgtcttccccggcgccgttcccattccctccaccttctgcctcaagatgagaactccggtcatcgaagacttcgccggcggatatccgtccgacgaggagtggcacggttacataaataacaacgatcgcgtacttctcaagactatatactactcgtcacctacgtctgctggtgccgaatgcattgatcctaactgtacttgggtggagcaatgggttcatcgtgctgggccacgagaaaagatatattttaaacctgaagaagtgaaagcagcaattgtaacatgcggagggctctgtcctggtcttaatgatgtcatcagacagattgtcattacacttgaaatatatggtgtaaaaaagattgttggtattccttacggttatcgtggcttttctgatccagaattagccgaaatgccactctcaaggaaggtggttcaaaatgttcatctttctggtggaagcttgttaggagtttcacgtggaggccccagcgttagtgaaatagtggacaatttagaggaaagagggatcaatatgctctttgttttgggtggaaacggcacacatgctggagccgatgcaatacacactgagtgccgcaaaagacagttaagggtggctatagttggtgtgccgaaaaccatagacaatgacattttgttaatggacaaaacatttggtttcgatactgctgttgaagaagcccagcgagcaataaattcagcatatattgaggcacatagtgcttaccatggtattggcgtcgtgaaattgatgggtcgtagcagtggattcatagcaatgcacgcatccctggctagtggacaaattgacatatgtttgatacctgaggtaccttttcaaatacatggccctcatggtattctgcaccatctgaaatacctgattgaaacaaagggatcagctgtggtctgtgtagcagagggagcagggcagaatttactacagaaaaccaatgctactgatgcatcaggaaatgttgtatttggggatattggagtacatattcaacaagagacaaagaaacattttaaggagcatggtgttcctgttgatgtgaaatatatagaccccacatacatgattcgtgcatgtcgtgcaaatgcatcagatggaattctttgcgctgtgctagggcagaatgccgttcatggtgcatttgctggatatagtggcattacgattggcatatgcaacactcattatgtatatcttccgattcctgaggttatttctcatccccgactggtggatcccaacagtcggatgtggcaccgttgcttgacttcaacaggccagccagacttcatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003872 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008443 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0061615 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

544

Amino Acids

59.09

Weight (kDa)

7.67

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22480
fragaria_vesca	FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980 FvH4_1g19980
malus_domestica	MD01G1037400.v1.1 MD15G1315500.v1.1
prunus_persica	Prupe.6G196200_v2.0.a1
pyrus_communis	pycom01g06530 pycom15g27870
rosa_chinensis	RchiOBHm_Chr2g0111921
rosa_laevigata	RLG00000017938
rosa_multiflora	Rmu_sc0005679.1_g000013 Rmu_sc0006947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131990
rosa_rugosa	Rorug02G0177100
rosa_samantha	Rh2AG229500 Rh2BG242300 Rh2CG233600 Rh2DG237200
rosa_wichuraiana	Rw2G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	1153
AccB1I	GGYRCC	4 cut(s)	305, 467, 1153, 1593
AccII	CGCG	3 cut(s)	26, 210, 423
AciI	CCGC	6 cut(s)	39, 55, 208, 372, 582, 898
AclWI	GGATC	8 cut(s)	200, 221, 476, 689, 836, 1228, 1568, 1581
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	1018, 1258, 1437
AcuI	CTGAAG	1 cut(s)	573
AcvI	CACGTG	1 cut(s)	779
AcyI	GRCGYC	3 cut(s)	294, 306, 1062
AdeI	CACNNNGTG	2 cut(s)	894, 1043
AfaI	GTAC	4 cut(s)	426, 493, 1155, 1323
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	1570, 1584
AgsI	TTSAA	7 cut(s)	638, 737, 998, 1163, 1211, 1331, 1611
AhdI	GACNNNNNGTC	1 cut(s)	623
AjnI	CCWGG	3 cut(s)	29, 595, 1113
AluBI	AGCT	2 cut(s)	762, 1226
AluI	AGCT	2 cut(s)	762, 1226
Alw26I	GTCTC	2 cut(s)	100, 1331
AlwI	GGATC	8 cut(s)	200, 221, 476, 689, 836, 1228, 1568, 1581
Aor51HI	AGCGCT	1 cut(s)	269
AoxI	GGCC	5 cut(s)	186, 524, 784, 1171, 1615
ApeKI	GCWGC	3 cut(s)	168, 171, 566
ApoI	RAATTY	3 cut(s)	1018, 1258, 1437
ArsI	GACNNNNNNTTYG	2 cut(s)	959, 991
AsiSI	GCGATCGC	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	1153
AspLEI	GCGC	4 cut(s)	28, 270, 308, 1448
AspS9I	GGNCC	3 cut(s)	524, 785, 1172
AsuC2I	CCSGG	2 cut(s)	190, 303
AsuHPI	GGTGA	2 cut(s)	280, 444
AxyI	CCTNAGG	2 cut(s)	1149, 1545
BaeGI	GKGCMC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	978, 1011
BamHI	GGATCC	1 cut(s)	1573
BanI	GGYRCC	4 cut(s)	305, 467, 1153, 1593
BanII	GRGCYC	1 cut(s)	591
BauI	CACGAG	1 cut(s)	528
BbrPI	CACGTG	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	289, 366
BbvI	GCAGC	3 cut(s)	180, 183, 578
BccI	CCATC	4 cut(s)	284, 1069, 1200, 1427
BceAI	ACGGC	3 cut(s)	293, 874, 1451
BciT130I	CCWGG	3 cut(s)	31, 597, 1115
BcnI	CCSGG	2 cut(s)	190, 303
BcoDI	GTCTC	2 cut(s)	100, 1331
BfaI	CTAG	2 cut(s)	1119, 1454
BfmI	CTRYAG	2 cut(s)	921, 1265
BfoI	RGCGCY	2 cut(s)	271, 309
BisI	GCNGC	5 cut(s)	39, 169, 172, 567, 898
BlsI	GCNGC	5 cut(s)	40, 170, 173, 568, 899
Bme1390I	CCNGG	5 cut(s)	31, 190, 303, 597, 1115
BmeRI	GACNNNNNGTC	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	524, 785, 1172
BmiI	GGNNCC	7 cut(s)	307, 469, 787, 874, 1155, 1575, 1595
BmrFI	CCNGG	5 cut(s)	31, 190, 303, 597, 1115
BmsI	GCATC	5 cut(s)	868, 1118, 1276, 1298, 1436
BpiI	GAAGAC	2 cut(s)	289, 366
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	3 cut(s)	320, 416, 706
BpuMI	CCSGG	2 cut(s)	190, 303
BsaAI	YACGTR	1 cut(s)	779
BsaHI	GRCGYC	3 cut(s)	294, 306, 1062
BsaJI	CCNNGG	4 cut(s)	29, 301, 1051, 1113
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	1570, 1584
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	239, 1572
Bse21I	CCTNAGG	2 cut(s)	1149, 1545
Bse3DI	GCAATG	2 cut(s)	512, 1107
BseBI	CCWGG	3 cut(s)	31, 597, 1115
BseDI	CCNNGG	4 cut(s)	29, 301, 1051, 1113
BseGI	GGATG	4 cut(s)	276, 1109, 1558, 1593
BseLI	CCNNNNNNNGG	2 cut(s)	1570, 1584
BseMI	GCAATG	2 cut(s)	512, 1107
BseMII	CTCAG	3 cut(s)	882, 1140, 1536
BseNI	ACTGG	2 cut(s)	239, 1572
BseRI	GAGGAG	4 cut(s)	73, 76, 79, 404
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	180, 183, 578
BseYI	CCCAGC	3 cut(s)	521, 788, 1005
BsgI	GTGCAG	1 cut(s)	1172
Bsh1236I	CGCG	3 cut(s)	26, 210, 423
Bsh1285I	CGRYCG	2 cut(s)	24, 421
BshFI	GGCC	5 cut(s)	188, 526, 786, 1173, 1617
BshNI	GGYRCC	4 cut(s)	305, 467, 1153, 1593
BsiEI	CGRYCG	2 cut(s)	24, 421
BsiSI	CCGG	4 cut(s)	189, 303, 350, 369
BslI	CCNNNNNNNGG	2 cut(s)	1570, 1584
BsmAI	GTCTC	2 cut(s)	100, 1331
BsmBI	CGTCTC	1 cut(s)	100
BsmI	GAATGC	2 cut(s)	479, 1468
BsnI	GGCC	5 cut(s)	188, 526, 786, 1173, 1617
Bsp1286I	GDGCHC	2 cut(s)	8, 591
Bsp143I	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
Bsp19I	CCATGG	1 cut(s)	1051
BspACI	CCGC	6 cut(s)	39, 55, 208, 372, 582, 898
BspANI	GGCC	5 cut(s)	188, 526, 786, 1173, 1617
BspCNI	CTCAG	3 cut(s)	883, 1141, 1537
BspFNI	CGCG	3 cut(s)	26, 210, 423
BspLI	GGNNCC	7 cut(s)	307, 469, 787, 874, 1155, 1575, 1595
BspPI	GGATC	8 cut(s)	200, 221, 476, 689, 836, 1228, 1568, 1581
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	4 cut(s)	305, 467, 1153, 1593
BsrDI	GCAATG	2 cut(s)	512, 1107
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	239, 1572
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	4 cut(s)	29, 301, 1051, 1113
BssMI	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
BssNI	GRCGYC	3 cut(s)	294, 306, 1062
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	1051
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	31, 597, 1115
Bst4CI	ACNGT	7 cut(s)	68, 401, 491, 677, 909, 1583, 1598
Bst6I	CTCTTC	3 cut(s)	103, 127, 158
BstACI	GRCGYC	3 cut(s)	294, 306, 1062
BstAPI	GCANNNNNTGC	2 cut(s)	1043, 1418
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	6 cut(s)	18, 36, 370, 1011, 1107, 1619
BstDEI	CTNAG	3 cut(s)	891, 1149, 1545
BstDSI	CCRYGG	1 cut(s)	1051
BstF5I	GGATG	4 cut(s)	276, 1109, 1558, 1593
BstFNI	CGCG	3 cut(s)	26, 210, 423
BstH2I	RGCGCY	2 cut(s)	271, 309
BstHHI	GCGC	4 cut(s)	28, 270, 308, 1448
BstKTI	GATC	9 cut(s)	24, 195, 229, 421, 484, 697, 831, 1223, 1576
BstMAI	GTCTC	2 cut(s)	100, 1331
BstMBI	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
BstMCI	CGRYCG	2 cut(s)	24, 421
BstMWI	GCNNNNNNNGC	7 cut(s)	1010, 1043, 1106, 1115, 1247, 1286, 1418
BstNI	CCWGG	3 cut(s)	31, 597, 1115
BstNSI	RCATGY	4 cut(s)	20, 582, 869, 1416
BstSCI	CCNGG	5 cut(s)	29, 188, 301, 595, 1113
BstSFI	CTRYAG	2 cut(s)	921, 1265
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	26, 210, 423
BstV1I	GCAGC	3 cut(s)	180, 183, 578
BstV2I	GAAGAC	2 cut(s)	289, 366
BstX2I	RGATCY	1 cut(s)	1573
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BstYI	RGATCY	1 cut(s)	1573
Bsu36I	CCTNAGG	2 cut(s)	1149, 1545
BsuRI	GGCC	5 cut(s)	188, 526, 786, 1173, 1617
BtgI	CCRYGG	1 cut(s)	1051
BtsCI	GGATG	4 cut(s)	276, 1109, 1558, 1593
BtsI	GCAGTG	1 cut(s)	1093
BtsIMutI	CAGTG	2 cut(s)	888, 1093
Cac8I	GCNNGC	6 cut(s)	18, 36, 370, 1011, 1107, 1619
CfoI	GCGC	4 cut(s)	28, 270, 308, 1448
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	524, 785, 1172
CseI	GACGC	1 cut(s)	1051
Csp6I	GTAC	4 cut(s)	425, 492, 1154, 1322
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviQI	GTAC	4 cut(s)	425, 492, 1154, 1322
DdeI	CTNAG	3 cut(s)	891, 1149, 1545
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	9 cut(s)	23, 194, 228, 420, 483, 696, 830, 1222, 1575
DpnII	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
DraI	TTTAAA	1 cut(s)	547
DraIII	CACNNNGTG	2 cut(s)	894, 1043
DriI	GACNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	3 cut(s)	103, 127, 158
Eam1105I	GACNNNNNGTC	1 cut(s)	623
EarI	CTCTTC	3 cut(s)	103, 127, 158
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	1051
Eco24I	GRGCYC	1 cut(s)	591
Eco32I	GATATC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	573
Eco72I	CACGTG	1 cut(s)	779
Eco81I	CCTNAGG	2 cut(s)	1149, 1545
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	1437
EcoRII	CCWGG	3 cut(s)	29, 595, 1113
EcoRV	GATATC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	1051
EcoT22I	ATGCAT	3 cut(s)	479, 1291, 1429
EcoT38I	GRGCYC	1 cut(s)	591
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	1051
Esp3I	CGTCTC	1 cut(s)	100
FauNDI	CATATG	2 cut(s)	1136, 1511
Fnu4HI	GCNGC	5 cut(s)	39, 169, 172, 567, 898
FokI	GGATG	4 cut(s)	263, 1096, 1545, 1600
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	5 cut(s)	39, 169, 172, 567, 898
FspBI	CTAG	2 cut(s)	1119, 1454
GlaI	GCGC	4 cut(s)	27, 269, 307, 1447
GluI	GCNGC	5 cut(s)	39, 169, 172, 567, 898
GsaI	CCCAGC	3 cut(s)	525, 792, 1009
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	2 cut(s)	271, 309
HaeIII	GGCC	5 cut(s)	188, 526, 786, 1173, 1617
HapII	CCGG	4 cut(s)	189, 303, 350, 369
HgaI	GACGC	1 cut(s)	1051
HhaI	GCGC	4 cut(s)	28, 270, 308, 1448
Hin1I	GRCGYC	3 cut(s)	294, 306, 1062
Hin6I	GCGC	4 cut(s)	26, 268, 306, 1446
HinP1I	GCGC	4 cut(s)	26, 268, 306, 1446
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	4 cut(s)	180, 1092, 1405, 1540
HpaII	CCGG	4 cut(s)	189, 303, 350, 369
HphI	GGTGA	2 cut(s)	280, 444
Hpy166II	GTNNAC	2 cut(s)	808, 1124
Hpy188I	TCNGA	7 cut(s)	385, 617, 694, 1197, 1432, 1539, 1587
Hpy8I	GTNNAC	2 cut(s)	808, 1124
Hpy99I	CGWCG	4 cut(s)	157, 296, 389, 1067
HpyAV	CCTTC	2 cut(s)	337, 721
HpyCH4III	ACNGT	7 cut(s)	68, 401, 491, 677, 909, 1583, 1598
HpyCH4IV	ACGT	3 cut(s)	294, 458, 778
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1010, 1043, 1106, 1115, 1247, 1286, 1418
HpyF3I	CTNAG	3 cut(s)	891, 1149, 1545
HpySE526I	ACGT	3 cut(s)	294, 458, 778
Hsp92I	GRCGYC	3 cut(s)	294, 306, 1062
HspAI	GCGC	4 cut(s)	26, 268, 306, 1446
KasI	GGCGCC	1 cut(s)	305
KpnI	GGTACC	1 cut(s)	1157
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Kzo9I	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	4 cut(s)	502, 872, 1247, 1357
Lsp1109I	GCAGC	3 cut(s)	180, 183, 578
LweI	GCATC	5 cut(s)	868, 1118, 1276, 1298, 1436
MaeI	CTAG	2 cut(s)	1119, 1454
MaeII	ACGT	3 cut(s)	294, 458, 778
MaeIII	GTNAC	4 cut(s)	62, 401, 450, 574
MalI	GATC	9 cut(s)	23, 194, 228, 420, 483, 696, 830, 1222, 1575
MboI	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	1573
MhlI	GDGCHC	2 cut(s)	8, 591
MluCI	AATT	8 cut(s)	570, 701, 811, 1018, 1070, 1128, 1258, 1437
Mly113I	GGCGCC	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	408, 1565
Mph1103I	ATGCAT	3 cut(s)	479, 1291, 1429
MreI	CGCCGGCG	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	5 cut(s)	546, 603, 911, 962, 1353
MslI	CAYNNNNRTG	3 cut(s)	69, 1100, 1400
MspA1I	CMGCKG	1 cut(s)	1226
MspI	CCGG	4 cut(s)	189, 303, 350, 369
MspR9I	CCNGG	5 cut(s)	31, 190, 303, 597, 1115
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	2 cut(s)	479, 1468
MvaI	CCWGG	3 cut(s)	31, 597, 1115
MvnI	CGCG	3 cut(s)	26, 210, 423
MwoI	GCNNNNNNNGC	7 cut(s)	1010, 1043, 1106, 1115, 1247, 1286, 1418
NaeI	GCCGGC	1 cut(s)	370
NarI	GGCGCC	1 cut(s)	306
NciI	CCSGG	2 cut(s)	190, 303
NcoI	CCATGG	1 cut(s)	1051
NdeI	CATATG	2 cut(s)	1136, 1511
NdeII	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
NgoMIV	GCCGGC	1 cut(s)	368
NlaIV	GGNNCC	7 cut(s)	307, 469, 787, 874, 1155, 1575, 1595
NmuCI	GTSAC	2 cut(s)	62, 450
NsiI	ATGCAT	3 cut(s)	479, 1291, 1429
NspI	RCATGY	4 cut(s)	20, 582, 869, 1416
PaeI	GCATGC	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	4 cut(s)	149, 222, 455, 1414
PctI	GAATGC	2 cut(s)	479, 1468
PdiI	GCCGGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	1092, 1405, 1540
PkrI	GCNGC	5 cut(s)	40, 170, 173, 568, 899
Ple19I	CGATCG	2 cut(s)	24, 421
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	779
PmlI	CACGTG	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	779
Psp6I	CCWGG	3 cut(s)	29, 595, 1113
PspCI	CACGTG	1 cut(s)	779
PspFI	CCCAGC	3 cut(s)	521, 788, 1005
PspGI	CCWGG	3 cut(s)	29, 595, 1113
PspN4I	GGNNCC	7 cut(s)	307, 469, 787, 874, 1155, 1575, 1595
PspPI	GGNCC	3 cut(s)	524, 785, 1172
PsuI	RGATCY	1 cut(s)	1573
PvuI	CGATCG	2 cut(s)	24, 421
PvuII	CAGCTG	1 cut(s)	1226
RgaI	GCGATCGC	1 cut(s)	24
RsaI	GTAC	4 cut(s)	426, 493, 1155, 1323
RsaNI	GTAC	4 cut(s)	425, 492, 1154, 1322
RseI	CAYNNNNRTG	3 cut(s)	69, 1100, 1400
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	546, 603, 911, 962, 1353
SatI	GCNGC	5 cut(s)	39, 169, 172, 567, 898
Sau3AI	GATC	9 cut(s)	21, 192, 226, 418, 481, 694, 828, 1220, 1573
Sau96I	GGNCC	3 cut(s)	524, 785, 1172
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	5 cut(s)	31, 190, 303, 597, 1115
SduI	GDGCHC	2 cut(s)	8, 591
SfaAI	GCGATCGC	1 cut(s)	24
SfaNI	GCATC	5 cut(s)	868, 1118, 1276, 1298, 1436
SfcI	CTRYAG	2 cut(s)	921, 1265
SfoI	GGCGCC	1 cut(s)	307
SgfI	GCGATCGC	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	368
SmiMI	CAYNNNNRTG	3 cut(s)	69, 1100, 1400
SmlI	CTYRAG	3 cut(s)	335, 431, 721
SmoI	CTYRAG	3 cut(s)	335, 431, 721
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	8 cut(s)	570, 701, 811, 1018, 1070, 1128, 1258, 1437
SsiI	CCGC	6 cut(s)	39, 55, 208, 372, 582, 898
SspDI	GGCGCC	1 cut(s)	305
SspMI	CTAG	2 cut(s)	1119, 1454
StyD4I	CCNGG	5 cut(s)	29, 188, 301, 595, 1113
StyI	CCWWGG	1 cut(s)	1051
TaaI	ACNGT	7 cut(s)	68, 401, 491, 677, 909, 1583, 1598
TaiI	ACGT	3 cut(s)	297, 461, 781
TaqI	TCGA	6 cut(s)	109, 178, 216, 261, 357, 984
TasI	AATT	8 cut(s)	570, 701, 811, 1018, 1070, 1128, 1258, 1437
TatI	WGTACW	2 cut(s)	491, 1321
TauI	GCSGC	2 cut(s)	41, 900
TfiI	GAWTC	3 cut(s)	1092, 1405, 1540
Tru1I	TTAA	5 cut(s)	546, 603, 911, 962, 1353
Tru9I	TTAA	5 cut(s)	546, 603, 911, 962, 1353
TscAI	CASTG	2 cut(s)	895, 1093
TseFI	GTSAC	2 cut(s)	62, 450
TseI	GCWGC	3 cut(s)	168, 171, 566
Tsp45I	GTSAC	2 cut(s)	62, 450
TspDTI	ATGAA	5 cut(s)	503, 734, 1084, 1460, 1618
TspGWI	ACGGA	3 cut(s)	50, 82, 369
TspRI	CASTG	2 cut(s)	895, 1093
XapI	RAATTY	3 cut(s)	1018, 1258, 1437
XceI	RCATGY	4 cut(s)	20, 582, 869, 1416
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	2 cut(s)	1119, 1454
ZraI	GACGTC	1 cut(s)	295
Zsp2I	ATGCAT	3 cut(s)	479, 1291, 1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.