Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016808

Physical Location & Seq

Genomic Coordinates Reverse (-)

10604883 .. 10605729

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGAAAAGGATACTAACTTCACAGTCTGCTAGAACCATATTTAATAGTTATAAGGTTGGTTCTGTGTCAAGTGTAGCACCATGGATATTCACAGTTGCAGCTAGTACCACATATCGCCGGATTAACAGCACTGTTCTTGCAAACGGAAAGAAACTAGTCGGGCACTCTACGAACACGTTCACATTAAATGGAACAAATTTTCCTCTCATATATGGAAAAGATGCTTCAAGAACAAATTGCTCTCAAATGCTAGCTAGTATATGTTGGGAAGGTTGCCTGGACCCTAATTTAGTTAAGGGAAAGATATTTGTATGTGAGAAGAACACTGGAATTCTTGGGGCTTACAGATCTGGGGTAGTTGGGATAATTTTTGTTAATTTTATGAACAAAACTTTTTCTCAAGTTCTCCCATTTCCTGGGCTAAATGTGGTCAAGTCCTACATGAACTCCACCAGGTATAGATTCATTTCAATACTGTTAAGTCATAAAAGATGTTGTTGCGCCTCTTGTTTCTATCACGTCTGCTACTGGACCGAATTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

183

Amino Acids

20.33

Weight (kDa)

9.76

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37161
malus_domestica	MD09G1128100.v1.1 MD11G1133600.v1.1
pyrus_communis	pycom01g09800 pycom01g09810 pycom03g06640 pycom07g09910
rosa_roxburghii	Rroxscaffold_4G00322790
rosa_samantha	Rh1AG055600 Rh1AG082700 Rh1CG056200 Rh1CG080700 Rh1DG060100 Rh1DG087300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	419
AcsI	RAATTY	3 cut(s)	199, 333, 539
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	231, 474
AhlI	ACTAGT	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	3 cut(s)	279, 418, 455
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	2 cut(s)	104, 257
AluI	AGCT	2 cut(s)	104, 257
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	3 cut(s)	199, 333, 539
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	283, 534
AsuNHI	GCTAGC	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	283, 534
BaeGI	GKGCMC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	281, 420, 457
BciVI	GTATCC	1 cut(s)	6
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	5 cut(s)	33, 105, 158, 254, 258
BfuI	GTATCC	1 cut(s)	6
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	281, 420, 457
Bme18I	GGWCC	2 cut(s)	283, 534
BmgBI	CACGTC	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	283, 534
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	3 cut(s)	281, 420, 457
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	83, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	334, 536
BseBI	CCWGG	3 cut(s)	281, 420, 457
BseDI	CCNNGG	2 cut(s)	83, 419
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	334, 536
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	350
Bsp19I	CCATGG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	285
BspOI	GCTAGC	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	334, 536
BssECI	CCNNGG	2 cut(s)	83, 419
BssMI	GATC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	3 cut(s)	281, 420, 457
Bst4CI	ACNGT	4 cut(s)	27, 97, 136, 480
BstC8I	GCNNGC	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	350
BstNI	CCWGG	3 cut(s)	281, 420, 457
BstSCI	CCNGG	3 cut(s)	279, 418, 455
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	132, 327
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	283, 534
CsiI	ACCWGGT	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	84, 445
CviJI	RGCY	4 cut(s)	104, 257, 344, 424
CviKI_1	RGCY	4 cut(s)	104, 257, 344, 424
CviQI	GTAC	1 cut(s)	108
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	283, 534
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	3 cut(s)	279, 418, 455
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	2 cut(s)	87, 448
FatI	CATG	2 cut(s)	83, 444
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	5 cut(s)	33, 105, 158, 254, 258
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	102
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	2 cut(s)	87, 448
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	465
HpaII	CCGG	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	4 cut(s)	27, 97, 136, 480
HpyCH4IV	ACGT	2 cut(s)	179, 522
HpyCH4V	TGCA	2 cut(s)	101, 143
HpySE526I	ACGT	2 cut(s)	179, 522
Hsp92II	CATG	2 cut(s)	87, 448
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	350
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	455
MaeI	CTAG	5 cut(s)	33, 105, 158, 254, 258
MaeII	ACGT	2 cut(s)	179, 522
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	2 cut(s)	16, 334
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	7 cut(s)	199, 238, 289, 333, 369, 379, 539
MnlI	CCTC	2 cut(s)	216, 517
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	6 cut(s)	45, 126, 188, 297, 378, 482
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	281, 420, 457
MvaI	CCWGG	3 cut(s)	281, 420, 457
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	350
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	87, 448
NlaIV	GGNNCC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	465
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	279, 418, 455
PspGI	CCWGG	3 cut(s)	279, 418, 455
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	283, 534
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	6 cut(s)	45, 126, 188, 297, 378, 482
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	2 cut(s)	283, 534
ScrFI	CCNGG	3 cut(s)	281, 420, 457
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	7 cut(s)	60, 106, 182, 259, 277, 461, 525
SexAI	ACCWGGT	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	2 cut(s)	283, 534
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	7 cut(s)	199, 238, 289, 333, 369, 379, 539
SspMI	CTAG	5 cut(s)	33, 105, 158, 254, 258
StyD4I	CCNGG	3 cut(s)	279, 418, 455
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	4 cut(s)	27, 97, 136, 480
TaiI	ACGT	2 cut(s)	182, 525
TasI	AATT	7 cut(s)	199, 238, 289, 333, 369, 379, 539
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	6 cut(s)	45, 126, 188, 297, 378, 482
Tru9I	TTAA	6 cut(s)	45, 126, 188, 297, 378, 482
TscAI	CASTG	2 cut(s)	139, 334
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	17, 401, 457, 461
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	139, 334
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	283, 534
XapI	RAATTY	3 cut(s)	199, 333, 539
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	5 cut(s)	33, 105, 158, 254, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.