Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016808

Physical Location & Seq

Genomic Coordinates Forward (+)

16873678 .. 16876637

Gene Structure 2960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTAAGCATGGAGCTATCCTATTTTCTTATGTTTTCCCCAGTCTTATACTTACCTTGAACTTCTTCCTGTGCAAAGCCATCGATGAAAACAGAAAGGTCCATATTGTGTACCTGGGTTCACTTCCTGATAATGAGGTGTACTCACCATTGTCTCACCACCTTGGTCTACTTGAAAAAGTTGTCGAGAGCAACTCCGCTGCAAATTTCTTGACAAGAAGTTACAAAAGGAGTTTCAATGGATTTGCTGCAAAGCTCACTGACCGCGAAAGGGAAAGGCTTGCTAACATGAAGGAAGTAGTCTCTGTCTTTCCGAACAGAATTCTCCATCCTCAGACAACAAGATCTTGGGACTTTATCGGTTTCAATGAGAAAACCAAACGGAATGCTAGCAACACTGGTCCTGATGATTCTAGTGTTGTAAGTGTAGCACCATGGATACTTGCAGTTGCAGCAAGTAGTACTGATCGTAGAATCATTGACAACGTTGTTCTCGAAAATGGGACGACATTGGTTGGGGCTACAGTGAACACTTTCACATTAAATGGGACAAGTTTTCCATTGATATATGGAAAAGATGCTTCAAGTCAATGCTCCGAGTCCAAAGCTGAGAGTTGTACAGAAGGCTGCTTAGACAGTGATTTAGTTAAGGGAAAGGTTGTGTTATGTGATGAGCCTTTCGGAGTTTATGAAGCCAATAGTTCTGGAGCAGTAGGCTCGATTCTGAGATTTGATTGGGATGATGTTTCTCCAATTGTACCCTTTCCTGCAACAGGTTTCACCTACGAAGAGCATAGTCTGATCAAGCTGTACATGAACTCCACGAAAGATGCTCGAGTAAACATATTAAAAATGAAGAATGTTGGCCTTGCAAACTCCACTTACAATGCTACAGTATTCGCCAACTCTACTGAAGTTGACATCAAAGTGGTGCCTCAAGTTCTTTCCTTCAAGTCATTGGATGAGGAGAAGACCTTTAATGTGACCGTTGCTGGAAAAGTGAAAATTCTCAACCAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

340

Amino Acids

37.41

Weight (kDa)

6.33

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	34 - 110	3.1e-14	Peptidase inhibitor I9
fn3_6	PF17766	284 - 333	6.3e-08	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37161
malus_domestica	MD09G1128100.v1.1 MD11G1133600.v1.1
pyrus_communis	pycom01g09800 pycom01g09810 pycom03g06640 pycom07g09910
rosa_roxburghii	Rroxscaffold_4G00322790
rosa_samantha	Rh1AG055600 Rh1AG082700 Rh1CG056200 Rh1CG080700 Rh1DG060100 Rh1DG087300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	169
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	198, 265
AclI	AACGTT	1 cut(s)	486
AcsI	RAATTY	3 cut(s)	205, 321, 1005
AcuI	CTGAAG	1 cut(s)	933
AfaI	GTAC	6 cut(s)	113, 143, 463, 619, 759, 812
AfiI	CCNNNNNNNGG	2 cut(s)	271, 773
AgsI	TTSAA	6 cut(s)	61, 176, 238, 367, 585, 952
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	17, 256, 608, 808
AluI	AGCT	4 cut(s)	17, 256, 608, 808
Alw26I	GTCTC	2 cut(s)	159, 307
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	1 cut(s)	865
ApeKI	GCWGC	4 cut(s)	200, 248, 452, 627
ApoI	RAATTY	3 cut(s)	205, 321, 1005
Asp700I	GAANNNNTTC	2 cut(s)	65, 533
AspS9I	GGNCC	2 cut(s)	100, 401
AsuHPI	GGTGA	3 cut(s)	138, 149, 772
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	2 cut(s)	100, 401
BanI	GGYRCC	1 cut(s)	931
BbsI	GAAGAC	1 cut(s)	977
BbvI	GCAGC	4 cut(s)	187, 235, 464, 614
BccI	CCATC	2 cut(s)	89, 336
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 699, 733
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	2 cut(s)	159, 307
BfaI	CTAG	2 cut(s)	390, 414
BfmI	CTRYAG	2 cut(s)	522, 891
BfuI	GTATCC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	4 cut(s)	201, 249, 453, 628
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	4 cut(s)	202, 250, 454, 629
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	100, 401
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	2 cut(s)	100, 401
BmiI	GGNNCC	1 cut(s)	933
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	568, 820
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	977
BplI	GAGNNNNNCTC	4 cut(s)	128, 160, 179, 211
BpmI	CTGGAG	1 cut(s)	726
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	921
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	115, 163, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 773
Bse1I	ACTGG	2 cut(s)	42, 403
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	115, 163, 434
BseGI	GGATG	3 cut(s)	328, 745, 967
BseLI	CCNNNNNNNGG	2 cut(s)	271, 773
BseMII	CTCAG	3 cut(s)	347, 600, 716
BseNI	ACTGG	2 cut(s)	42, 403
BseRI	GAGGAG	1 cut(s)	980
BseXI	GCAGC	4 cut(s)	187, 235, 464, 614
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	867
BshNI	GGYRCC	1 cut(s)	931
BshVI	ATCGAT	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	834
BslFI	GGGAC	3 cut(s)	365, 517, 562
BslI	CCNNNNNNNGG	2 cut(s)	271, 773
BsmAI	GTCTC	2 cut(s)	159, 307
BsmFI	GGGAC	3 cut(s)	365, 517, 562
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	867
BsoBI	CYCGRG	1 cut(s)	834
Bsp1407I	TGTACA	2 cut(s)	617, 810
Bsp143I	GATC	3 cut(s)	344, 466, 801
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	434
BspACI	CCGC	2 cut(s)	198, 265
BspANI	GGCC	1 cut(s)	867
BspCNI	CTCAG	3 cut(s)	346, 601, 717
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	933
BspOI	GCTAGC	1 cut(s)	393
BspQI	GCTCTTC	1 cut(s)	783
BspT107I	GGYRCC	1 cut(s)	931
BsrGI	TGTACA	2 cut(s)	617, 810
BsrI	ACTGG	2 cut(s)	42, 403
BssECI	CCNNGG	3 cut(s)	115, 163, 434
BssMI	GATC	3 cut(s)	344, 466, 801
BssT1I	CCWWGG	2 cut(s)	163, 434
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	4 cut(s)	526, 638, 895, 988
Bst6I	CTCTTC	1 cut(s)	783
BstAUI	TGTACA	2 cut(s)	617, 810
BstC8I	GCNNGC	2 cut(s)	282, 391
BstDEI	CTNAG	5 cut(s)	6, 333, 609, 631, 725
BstDSI	CCRYGG	1 cut(s)	434
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	3 cut(s)	328, 745, 967
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	3 cut(s)	347, 469, 804
BstMAI	GTCTC	2 cut(s)	159, 307
BstMBI	GATC	3 cut(s)	344, 466, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	522, 891
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	187, 235, 464, 614
BstV2I	GAAGAC	1 cut(s)	977
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	867
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	328, 745, 967
BtsIMutI	CAGTG	4 cut(s)	258, 396, 531, 643
Cac8I	GCNNGC	2 cut(s)	282, 391
Cfr13I	GGNCC	2 cut(s)	100, 401
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	6 cut(s)	112, 142, 462, 618, 758, 811
CviAII	CATG	4 cut(s)	11, 289, 435, 814
CviQI	GTAC	6 cut(s)	112, 142, 462, 618, 758, 811
DdeI	CTNAG	5 cut(s)	6, 333, 609, 631, 725
DpnI	GATC	3 cut(s)	346, 468, 803
DpnII	GATC	3 cut(s)	344, 466, 801
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Eco130I	CCWWGG	2 cut(s)	163, 434
Eco47I	GGWCC	2 cut(s)	100, 401
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	834
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoRI	GAATTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	163, 434
ErhI	CCWWGG	2 cut(s)	163, 434
FaeI	CATG	4 cut(s)	14, 292, 438, 817
FaqI	GGGAC	3 cut(s)	365, 517, 562
FatI	CATG	4 cut(s)	10, 288, 434, 813
FbaI	TGATCA	1 cut(s)	801
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	201, 249, 453, 628
FokI	GGATG	3 cut(s)	315, 752, 974
Fsp4HI	GCNGC	4 cut(s)	201, 249, 453, 628
FspBI	CTAG	2 cut(s)	390, 414
GluI	GCNGC	4 cut(s)	201, 249, 453, 628
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	867
Hin1II	CATG	4 cut(s)	14, 292, 438, 817
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HinfI	GANTC	4 cut(s)	410, 474, 599, 721
HphI	GGTGA	3 cut(s)	138, 149, 772
Hpy166II	GTNNAC	7 cut(s)	112, 122, 142, 170, 529, 841, 919
Hpy188I	TCNGA	6 cut(s)	315, 336, 598, 683, 726, 801
Hpy188III	TCNNGA	6 cut(s)	128, 187, 211, 404, 494, 705
Hpy8I	GTNNAC	7 cut(s)	112, 122, 142, 170, 529, 841, 919
HpyAV	CCTTC	3 cut(s)	286, 617, 958
HpyCH4III	ACNGT	4 cut(s)	526, 638, 895, 988
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	7 cut(s)	75, 203, 251, 446, 452, 770, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	5 cut(s)	6, 333, 609, 631, 725
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	14, 292, 438, 817
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	3 cut(s)	344, 466, 801
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	3 cut(s)	14, 599, 707
Lsp1109I	GCAGC	4 cut(s)	187, 235, 464, 614
LweI	GCATC	2 cut(s)	568, 820
MaeI	CTAG	2 cut(s)	390, 414
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	221, 982
MalI	GATC	3 cut(s)	346, 468, 803
MboI	GATC	3 cut(s)	344, 466, 801
MboII	GAAGA	4 cut(s)	58, 800, 868, 982
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	4 cut(s)	205, 321, 753, 1005
MlyI	GAGTC	1 cut(s)	608
MnlI	CCTC	4 cut(s)	130, 342, 945, 958
MroXI	GAANNNNTTC	2 cut(s)	65, 533
MseI	TTAA	4 cut(s)	542, 648, 848, 978
MslI	CAYNNNNRTG	1 cut(s)	926
MspA1I	CMGCKG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	3 cut(s)	344, 466, 801
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	14, 292, 438, 817
NlaIV	GGNNCC	1 cut(s)	933
NmuCI	GTSAC	1 cut(s)	982
PaeR7I	CTCGAG	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	2 cut(s)	65, 533
PfeI	GAWTC	3 cut(s)	410, 474, 721
PkrI	GCNGC	4 cut(s)	202, 250, 454, 629
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	933
PspPI	GGNCC	2 cut(s)	100, 401
PspXI	VCTCGAGB	1 cut(s)	834
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	6 cut(s)	113, 143, 463, 619, 759, 812
RsaNI	GTAC	6 cut(s)	112, 142, 462, 618, 758, 811
RseI	CAYNNNNRTG	1 cut(s)	926
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	542, 648, 848, 978
SatI	GCNGC	4 cut(s)	201, 249, 453, 628
Sau3AI	GATC	3 cut(s)	344, 466, 801
Sau96I	GGNCC	2 cut(s)	100, 401
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	116
SfaNI	GCATC	2 cut(s)	568, 820
SfcI	CTRYAG	2 cut(s)	522, 891
Sfr274I	CTCGAG	1 cut(s)	834
SinI	GGWCC	2 cut(s)	100, 401
SlaI	CTCGAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	926
SmlI	CTYRAG	2 cut(s)	834, 936
SmoI	CTYRAG	2 cut(s)	834, 936
Sse9I	AATT	4 cut(s)	205, 321, 753, 1005
SsiI	CCGC	2 cut(s)	198, 265
SspMI	CTAG	2 cut(s)	390, 414
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	163, 434
TaaI	ACNGT	4 cut(s)	526, 638, 895, 988
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	5 cut(s)	84, 186, 495, 719, 835
TasI	AATT	4 cut(s)	205, 321, 753, 1005
TatI	WGTACW	4 cut(s)	141, 461, 617, 810
TfiI	GAWTC	3 cut(s)	410, 474, 721
Tru1I	TTAA	4 cut(s)	542, 648, 848, 978
Tru9I	TTAA	4 cut(s)	542, 648, 848, 978
TscAI	CASTG	4 cut(s)	265, 403, 531, 643
TseFI	GTSAC	1 cut(s)	982
TseI	GCWGC	4 cut(s)	200, 248, 452, 627
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	5 cut(s)	102, 305, 705, 830, 869
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	4 cut(s)	265, 403, 531, 643
VpaK11BI	GGWCC	2 cut(s)	100, 401
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	3 cut(s)	205, 321, 1005
XhoI	CTCGAG	1 cut(s)	834
XmiI	GTMKAC	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	65, 533
XspI	CTAG	2 cut(s)	390, 414
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.