Rh1AG055600

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016808
Physical Location & Seq
Reverse (-)
9062932 .. 9084543
21612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG055600.1

Sequence Viewer

Length: 390 bp
ATGTGCGATATCTACTTTCAAGTGTTAACAAGGAAATGCTGTAAAGGATGTGAGCTTTTATGGACTAGCACAAGGATCGAAACAGCAAGAAGTGTAGTTCCCTCTGCGAGAATTGCTGCATATATAGTCTGCAGTCCCATTCTAGGGTGCTATTCAAATTCTATCTTGGCTGCTTTTGAAGACGTTATTGCTGACGGTGTTGACATCATTACAATTTCAATTGGAGGCAGGGAACCAATGCGTTTCCAGGAAGATGTGATTGTTATCGGTGCTTTCCAAGCATCGGTGAAAGGGATACTAACCATAAACTCTGCAGGAAACAGTGGTCCTAGAGCTAGTTCTGTAACAAGCGTGGCACCATGGTTGCTCTCAGTGGCAGGCTGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

129

Amino Acids

13.66

Weight (kDa)

6.16

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 30 - 117 3.1e-06 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 157
AfiI CCNNNNNNNGG 3 cut(s) 143, 144, 283
AgsI TTSAA 4 cut(s) 20, 156, 179, 219
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 55, 335, 387
AluI AGCT 3 cut(s) 55, 335, 387
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 116, 170, 381, 384
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 3 cut(s) 103, 157, 368
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 288
BfaI CTAG 5 cut(s) 66, 143, 330, 336, 388
BfmI CTRYAG 3 cut(s) 130, 312, 382
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 4 cut(s) 117, 171, 382, 385
BlsI GCNGC 4 cut(s) 118, 172, 383, 386
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 234, 357
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 144, 283
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 53
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 3 cut(s) 143, 144, 283
BseMII CTCAG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 103, 157, 368
BshNI GGYRCC 1 cut(s) 355
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 3 cut(s) 143, 144, 283
BsmFI GGGAC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 234, 357
BspMAI CTGCAG 3 cut(s) 134, 316, 386
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 197, 323
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 113, 278
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 3 cut(s) 130, 312, 382
BstV1I GCAGC 3 cut(s) 103, 157, 368
BstV2I GAAGAC 1 cut(s) 186
BsuI GTATCC 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 328, 378
Cac8I GCNNGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 326
CviAII CATG 1 cut(s) 360
CviJI RGCY 5 cut(s) 55, 170, 335, 381, 387
CviKI_1 RGCY 5 cut(s) 55, 170, 335, 381, 387
DdeI CTNAG 1 cut(s) 370
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 359
Eco32I GATATC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 1 cut(s) 363
FaiI YATR 6 cut(s) 61, 121, 123, 125, 305, 361
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 359
Fnu4HI GCNGC 4 cut(s) 117, 171, 382, 385
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 4 cut(s) 117, 171, 382, 385
FspBI CTAG 5 cut(s) 66, 143, 330, 336, 388
GluI GCNGC 4 cut(s) 117, 171, 382, 385
Hin1II CATG 1 cut(s) 363
HincII GTYRAC 2 cut(s) 27, 202
HindII GTYRAC 2 cut(s) 27, 202
HpaI GTTAAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 27, 202
Hpy8I GTNNAC 2 cut(s) 27, 202
HpyCH4III ACNGT 2 cut(s) 197, 323
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 119, 132, 314, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 278
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 5 cut(s) 214, 233, 260, 300, 363
Lsp1109I GCAGC 3 cut(s) 103, 157, 368
LweI GCATC 1 cut(s) 290
MaeI CTAG 5 cut(s) 66, 143, 330, 336, 388
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 191, 263
MfeI CAATTG 1 cut(s) 219
MluCI AATT 4 cut(s) 111, 157, 213, 219
MnlI CCTC 2 cut(s) 112, 218
MseI TTAA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 113, 278
NcoI CCATGG 1 cut(s) 359
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 2 cut(s) 234, 357
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 4 cut(s) 118, 172, 383, 386
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 234, 357
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 3 cut(s) 134, 316, 386
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 4 cut(s) 117, 171, 382, 385
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 248
SetI ASST 4 cut(s) 57, 186, 337, 389
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 3 cut(s) 130, 312, 382
SinI GGWCC 1 cut(s) 326
Sse9I AATT 4 cut(s) 111, 157, 213, 219
SspMI CTAG 5 cut(s) 66, 143, 330, 336, 388
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 197, 323
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 78
TasI AATT 4 cut(s) 111, 157, 213, 219
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 328, 378
TseI GCWGC 4 cut(s) 116, 170, 381, 384
TspRI CASTG 2 cut(s) 328, 378
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 157
XspI CTAG 5 cut(s) 66, 143, 330, 336, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.