Rh1DG060100

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016808
Physical Location & Seq
Reverse (-)
10333325 .. 10333660
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG060100.1

Sequence Viewer

Length: 336 bp
ATGGCAAAGGGGATACTTACATCAAACTCGGCAGGCAATAATGGTCCTAGAGCTAGTACCGTAACAAGTGTAGCACCATGGTTACTTACAGATGCAGCAAGTACTACAGATCGTAGAATGATTGACAAGGTTGTTCTTGGAAATGGTACAACTGTAGTTGGGGCTTCAGTGAACTCTTTCCAAATGACTGGGACAAGTTTTCCATTAATATATGGAAAAGATGCTACAACTCAATGCCTAGAGTTTGATGCTCGGAAGTGTATACAAGACTGCTTAGACCGTGGTTTAGTGAAGGGAAAGGTTGTGTTATGTGACGAGTCATATGGCCGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

111

Amino Acids

11.75

Weight (kDa)

8.42

Isoelectric Point (pI)

11.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 3 cut(s) 58, 103, 148
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 95
AseI ATTAAT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BbvI GCAGC 1 cut(s) 107
BciVI GTATCC 1 cut(s) 6
BfaI CTAG 3 cut(s) 48, 54, 239
BfmI CTRYAG 2 cut(s) 105, 153
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 3 cut(s) 82, 211, 238
BmuI ACTGGG 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 77, 280
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 77, 280
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 327
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 77
BspANI GGCC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 77, 280
BssMI GATC 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 77
Bst1107I GTATAC 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 61, 154, 281
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 274
BstDSI CCRYGG 2 cut(s) 77, 280
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstSFI CTRYAG 2 cut(s) 105, 153
BstV1I GCAGC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 188
BstZ17I GTATAC 1 cut(s) 263
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 2 cut(s) 77, 280
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 57, 102, 147
CviAII CATG 1 cut(s) 78
CviJI RGCY 3 cut(s) 53, 164, 327
CviKI_1 RGCY 3 cut(s) 53, 164, 327
CviQI GTAC 3 cut(s) 57, 102, 147
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 1 cut(s) 81
FaiI YATR 7 cut(s) 79, 211, 213, 263, 310, 322, 324
FaqI GGGAC 1 cut(s) 205
FatI CATG 1 cut(s) 77
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 3 cut(s) 48, 54, 239
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 328
Hin1II CATG 1 cut(s) 81
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 328
Hpy166II GTNNAC 2 cut(s) 172, 263
Hpy188I TCNGA 1 cut(s) 255
Hpy8I GTNNAC 2 cut(s) 172, 263
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 61, 154, 281
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 274
Hsp92II CATG 1 cut(s) 81
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 18, 174
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 3 cut(s) 82, 211, 238
MaeI CTAG 3 cut(s) 48, 54, 239
MaeIII GTNAC 3 cut(s) 61, 81, 311
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 206
MspI CCGG 1 cut(s) 328
NcoI CCATGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 81
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 206
PspPI GGNCC 1 cut(s) 44
RsaI GTAC 3 cut(s) 58, 103, 148
RsaNI GTAC 3 cut(s) 57, 102, 147
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 1 cut(s) 326
SetI ASST 3 cut(s) 55, 132, 303
SfaNI GCATC 3 cut(s) 82, 211, 238
SfcI CTRYAG 2 cut(s) 105, 153
SinI GGWCC 1 cut(s) 44
Sse9I AATT 1 cut(s) 331
SspMI CTAG 3 cut(s) 48, 54, 239
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 3 cut(s) 61, 154, 281
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 101
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 311
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 3 cut(s) 48, 54, 239
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.