Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016808

Physical Location & Seq

Genomic Coordinates Forward (+)

16240909 .. 16243615

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG087300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTAAGCATGGAGCTATCCTATTTTCTTATGTTTTCCCCACACCATGGATACTTGCAGTTGCAGCAAGTAGTACTGATCGTAGAATCATTGACAACGTTGTTCTCGAAAATGGGACGACATTGGTTGGGGCTACAGTGAACACTTTCACATTAAATGGGACAAGTTTTCCATTGATATATGGAAAAGATGCTTCAAGTCAATGCTCCGAGTCCAAAGCTGAGAGTTGTACAGAAGGCTGCTTAGACAGTGATTTAGTTAAGGGAAAGGTTGTGTTATGTGATGAGCCTTTCGGAGTTTATGAAGCCAATAGTTCTGGAGCAGTAGGCTCGATTCTGAGATTTGATTGGGATGATGTTTCTCCAATTGTACCCTTTCCTGCAACAGGTTTCACCTACGAAGAGCATAGTCTGATCAAGCTGTACATGAACTCCACGAAAGATGCTCGAGTAAACATATTAAAAATGAAAATTCTCAACCAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

162

Amino Acids

17.58

Weight (kDa)

4.93

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37161
malus_domestica	MD09G1128100.v1.1 MD11G1133600.v1.1
pyrus_communis	pycom01g09800 pycom01g09810 pycom03g06640 pycom07g09910
rosa_roxburghii	Rroxscaffold_4G00322790
rosa_samantha	Rh1AG055600 Rh1AG082700 Rh1CG056200 Rh1CG080700 Rh1DG060100 Rh1DG087300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	48
AclI	AACGTT	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	4 cut(s)	76, 232, 372, 425
AfiI	CCNNNNNNNGG	2 cut(s)	48, 386
AgsI	TTSAA	1 cut(s)	198
AluBI	AGCT	3 cut(s)	17, 221, 421
AluI	AGCT	3 cut(s)	17, 221, 421
Ama87I	CYCGRG	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	65, 240
ApoI	RAATTY	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	77, 227
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciVI	GTATCC	1 cut(s)	45
BclI	TGATCA	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	2 cut(s)	66, 241
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	67, 242
BmcAI	AGTACT	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	181, 433
BpmI	CTGGAG	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 386
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	48, 386
BseMII	CTCAG	2 cut(s)	213, 329
BseXI	GCAGC	2 cut(s)	77, 227
BsiHKCI	CYCGRG	1 cut(s)	447
BslFI	GGGAC	2 cut(s)	130, 175
BslI	CCNNNNNNNGG	2 cut(s)	48, 386
BsmFI	GGGAC	2 cut(s)	130, 175
BsoBI	CYCGRG	1 cut(s)	447
Bsp1407I	TGTACA	2 cut(s)	230, 423
Bsp143I	GATC	2 cut(s)	79, 414
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	214, 330
BspQI	GCTCTTC	1 cut(s)	396
BsrGI	TGTACA	2 cut(s)	230, 423
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	79, 414
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	139, 251
Bst6I	CTCTTC	1 cut(s)	396
BstAUI	TGTACA	2 cut(s)	230, 423
BstDEI	CTNAG	4 cut(s)	6, 222, 244, 338
BstDSI	CCRYGG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	82, 417
BstMBI	GATC	2 cut(s)	79, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	77, 227
BsuI	GTATCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	144, 256
Csp6I	GTAC	4 cut(s)	75, 231, 371, 424
CviAII	CATG	3 cut(s)	11, 48, 427
CviJI	RGCY	9 cut(s)	5, 17, 134, 221, 240, 289, 308, 330, 421
CviKI_1	RGCY	9 cut(s)	5, 17, 134, 221, 240, 289, 308, 330, 421
CviQI	GTAC	4 cut(s)	75, 231, 371, 424
DdeI	CTNAG	4 cut(s)	6, 222, 244, 338
DpnI	GATC	2 cut(s)	81, 416
DpnII	GATC	2 cut(s)	79, 414
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	3 cut(s)	14, 51, 430
FaqI	GGGAC	2 cut(s)	130, 175
FatI	CATG	3 cut(s)	10, 47, 426
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	66, 241
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	66, 241
GluI	GCNGC	2 cut(s)	66, 241
GsuI	CTGGAG	1 cut(s)	339
Hin1II	CATG	3 cut(s)	14, 51, 430
HinfI	GANTC	3 cut(s)	87, 212, 334
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	142, 454
Hpy188I	TCNGA	4 cut(s)	211, 296, 339, 414
Hpy188III	TCNNGA	2 cut(s)	107, 318
Hpy8I	GTNNAC	2 cut(s)	142, 454
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	139, 251
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	59, 65, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	4 cut(s)	6, 222, 244, 338
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	14, 51, 430
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	79, 414
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	3 cut(s)	14, 212, 320
LpnPI	CCDG	3 cut(s)	303, 372, 393
Lsp1109I	GCAGC	2 cut(s)	77, 227
LweI	GCATC	2 cut(s)	181, 433
MaeII	ACGT	1 cut(s)	99
MalI	GATC	2 cut(s)	81, 416
MboI	GATC	2 cut(s)	79, 414
MboII	GAAGA	1 cut(s)	413
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	2 cut(s)	366, 471
MlyI	GAGTC	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	3 cut(s)	155, 261, 461
MunI	CAATTG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	79, 414
NlaIII	CATG	3 cut(s)	14, 51, 430
PaeR7I	CTCGAG	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	87, 334
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	67, 242
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp1406I	AACGTT	1 cut(s)	99
PspXI	VCTCGAGB	1 cut(s)	447
RsaI	GTAC	4 cut(s)	76, 232, 372, 425
RsaNI	GTAC	4 cut(s)	75, 231, 371, 424
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	155, 261, 461
SatI	GCNGC	2 cut(s)	66, 241
Sau3AI	GATC	2 cut(s)	79, 414
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	1 cut(s)	221
SetI	ASST	7 cut(s)	19, 102, 223, 273, 391, 398, 423
SfaNI	GCATC	2 cut(s)	181, 433
SfcI	CTRYAG	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	2 cut(s)	366, 471
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	139, 251
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	108, 332, 448
TasI	AATT	2 cut(s)	366, 471
TatI	WGTACW	3 cut(s)	74, 230, 423
TfiI	GAWTC	2 cut(s)	87, 334
Tru1I	TTAA	3 cut(s)	155, 261, 461
Tru9I	TTAA	3 cut(s)	155, 261, 461
TscAI	CASTG	2 cut(s)	144, 256
TseI	GCWGC	2 cut(s)	65, 240
TspDTI	ATGAA	3 cut(s)	318, 443, 482
TspRI	CASTG	2 cut(s)	144, 256
Van91I	CCANNNNNTGG	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	471
XhoI	CTCGAG	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.