Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016808

Physical Location & Seq

Genomic Coordinates Reverse (-)

5203708 .. 5204694

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATCCGTGCAATGTTGTTAAGGATTTAAATTTTTATGGACTAGCAAACGGTACTGCAAGAGGAGGCGTTCCTGCTGCAAAAATTGCAGCATATCAAGTCTGTATTCCACGCTGCCAAGATCACACCTTACTGGCTGCTTTTGATGATGCTATTGCTGATGGAGTTAAGATCATTACAATTTCACTTGGACAATTAGATCCGATTGGTTTGGATGAGGATGCCATTGCAATTGGTGCTTTTCATGCAATGAAGAAAGGGATAATGACTTCACAGGCTGCAGGCAATTTGGGTCTTGGTATTGCTTCTGTGTCAAGTGTAGCACCATGGATATTGACAGTTGCGGCAAGTAACATGGATCGCTACTTCGTTGACAAGATTGTTCTTGCAAGTGGAACCACCCTTGTTGGTAATTCAATTAACACTTTCATATTAAATGGAACAAGTTTTCCTCTGATATATGGAAAAGATGCTGGAACGAAATATTGCACTGCAGAAGATGCACGAAATTGTGAAGAAGGATGCTTGGATAGTGATTTGGTTAAGGGAAAGATAGTGGTATGCGATGAGATACAAGGAGATAGAGCGGCATACAAATCTGGAGCACTTGGTTCAGTTACACTTAATGAAGTTGGATATAATGTTTCTCTTGTTCCCTTATTGGCCTCAACAACGTTAATGAAGGAAGAGTATAATTTGGTCAGGTCCTACATGAACTCCACCAGGTATCGATTCTTTCGATACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

250

Amino Acids

26.52

Weight (kDa)

5.21

Isoelectric Point (pI)

15.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37161
malus_domestica	MD09G1128100.v1.1 MD11G1133600.v1.1
pyrus_communis	pycom01g09800 pycom01g09810 pycom03g06640 pycom07g09910
rosa_roxburghii	Rroxscaffold_4G00322790
rosa_samantha	Rh1AG055600 Rh1AG082700 Rh1CG056200 Rh1CG080700 Rh1DG060100 Rh1DG087300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	587
AciI	CCGC	2 cut(s)	344, 587
AclI	AACGTT	1 cut(s)	674
AclWI	GGATC	3 cut(s)	12, 194, 366
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	722
AloI	GAACNNNNNNTCC	2 cut(s)	433, 465
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	3 cut(s)	12, 194, 366
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	5 cut(s)	77, 89, 114, 137, 278
ApoI	RAATTY	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	705
AvaII	GGWCC	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	5 cut(s)	64, 101, 101, 124, 265
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	724
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	2 cut(s)	279, 492
BisI	GCNGC	7 cut(s)	78, 90, 115, 138, 279, 345, 588
BlsI	GCNGC	7 cut(s)	79, 91, 116, 139, 280, 346, 589
Bme1390I	CCNGG	1 cut(s)	724
Bme18I	GGWCC	1 cut(s)	705
BmgT120I	GGNCC	1 cut(s)	705
BmiI	GGNNCC	2 cut(s)	6, 397
BmrFI	CCNGG	1 cut(s)	724
BmsI	GCATC	5 cut(s)	139, 211, 460, 490, 512
BpmI	CTGGAG	1 cut(s)	621
Bsa29I	ATCGAT	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	3 cut(s)	19, 225, 255
BseBI	CCWGG	1 cut(s)	724
BseCI	ATCGAT	1 cut(s)	730
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	3 cut(s)	220, 226, 527
BseMI	GCAATG	3 cut(s)	19, 225, 255
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	5 cut(s)	64, 101, 101, 124, 265
BshFI	GGCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	730
BsiHKAI	GWGCWC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	4, 121, 171, 199, 358
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	2 cut(s)	344, 587
BspANI	GGCC	1 cut(s)	665
BspDI	ATCGAT	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	6, 397
BspMAI	CTGCAG	2 cut(s)	283, 496
BspPI	GGATC	3 cut(s)	12, 194, 366
BsrBI	CCGCTC	1 cut(s)	587
BsrDI	GCAATG	3 cut(s)	19, 225, 255
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	5 cut(s)	4, 121, 171, 199, 358
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	2 cut(s)	53, 340
Bst6I	CTCTTC	1 cut(s)	681
BstAPI	GCANNNNNTGC	3 cut(s)	86, 236, 500
BstC8I	GCNNGC	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	220, 226, 527
BstKTI	GATC	5 cut(s)	7, 124, 174, 202, 361
BstMBI	GATC	5 cut(s)	4, 121, 171, 199, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 236, 245, 500
BstNI	CCWGG	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	722
BstSFI	CTRYAG	2 cut(s)	279, 492
BstV1I	GCAGC	5 cut(s)	64, 101, 101, 124, 265
BstX2I	RGATCY	2 cut(s)	4, 199
BstYI	RGATCY	2 cut(s)	4, 199
Bsu15I	ATCGAT	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	665
BsuTUI	ATCGAT	1 cut(s)	730
BtgI	CCRYGG	1 cut(s)	326
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	220, 226, 527
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	705
ClaI	ATCGAT	1 cut(s)	730
CsiI	ACCWGGT	1 cut(s)	722
Csp6I	GTAC	1 cut(s)	54
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	4 cut(s)	245, 327, 355, 712
CviJI	RGCY	3 cut(s)	137, 278, 665
CviKI_1	RGCY	3 cut(s)	137, 278, 665
CviQI	GTAC	1 cut(s)	54
DpnI	GATC	5 cut(s)	6, 123, 173, 201, 360
DpnII	GATC	5 cut(s)	4, 121, 171, 199, 358
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	705
EcoO109I	RGGNCCY	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	4 cut(s)	248, 330, 358, 715
FatI	CATG	4 cut(s)	244, 326, 354, 711
Fnu4HI	GCNGC	7 cut(s)	78, 90, 115, 138, 279, 345, 588
FokI	GGATG	3 cut(s)	227, 233, 534
Fsp4HI	GCNGC	7 cut(s)	78, 90, 115, 138, 279, 345, 588
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	7 cut(s)	78, 90, 115, 138, 279, 345, 588
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	665
Hin1II	CATG	4 cut(s)	248, 330, 358, 715
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	732
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	204, 456
Hpy188III	TCNNGA	1 cut(s)	600
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	512, 676
HpyCH4III	ACNGT	2 cut(s)	53, 340
HpyCH4IV	ACGT	1 cut(s)	674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 236, 245, 500
HpySE526I	ACGT	1 cut(s)	674
Hsp92II	CATG	4 cut(s)	248, 330, 358, 715
Kzo9I	GATC	5 cut(s)	4, 121, 171, 199, 358
LmnI	GCTCC	1 cut(s)	602
LpnPI	CCDG	9 cut(s)	87, 119, 260, 267, 459, 585, 688, 709, 736
Lsp1109I	GCAGC	5 cut(s)	64, 101, 101, 124, 265
LweI	GCATC	5 cut(s)	139, 211, 460, 490, 512
MabI	ACCWGGT	1 cut(s)	722
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	2 cut(s)	350, 616
MalI	GATC	5 cut(s)	6, 123, 173, 201, 360
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	5 cut(s)	4, 121, 171, 199, 358
MboII	GAAGA	4 cut(s)	265, 509, 527, 698
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	2 cut(s)	4, 199
MhlI	GDGCHC	1 cut(s)	607
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	5 cut(s)	56, 59, 211, 462, 676
MseI	TTAA	8 cut(s)	21, 29, 168, 420, 434, 543, 624, 677
MspR9I	CCNGG	1 cut(s)	724
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	724
MwoI	GCNNNNNNNGC	4 cut(s)	86, 236, 245, 500
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	5 cut(s)	4, 121, 171, 199, 358
NlaIII	CATG	4 cut(s)	248, 330, 358, 715
NlaIV	GGNNCC	2 cut(s)	6, 397
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PfeI	GAWTC	1 cut(s)	732
PkrI	GCNGC	7 cut(s)	79, 91, 116, 139, 280, 346, 589
PpuMI	RGGWCCY	1 cut(s)	705
Psp1406I	AACGTT	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	2 cut(s)	6, 397
PspPI	GGNCC	1 cut(s)	705
PspPPI	RGGWCCY	1 cut(s)	705
PstI	CTGCAG	2 cut(s)	283, 496
PsuI	RGATCY	2 cut(s)	4, 199
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	8 cut(s)	21, 29, 168, 420, 434, 543, 624, 677
SatI	GCNGC	7 cut(s)	78, 90, 115, 138, 279, 345, 588
Sau3AI	GATC	5 cut(s)	4, 121, 171, 199, 358
Sau96I	GGNCC	1 cut(s)	705
ScrFI	CCNGG	1 cut(s)	724
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	4 cut(s)	131, 677, 707, 728
SexAI	ACCWGGT	1 cut(s)	722
SfaNI	GCATC	5 cut(s)	139, 211, 460, 490, 512
SfcI	CTRYAG	2 cut(s)	279, 492
SinI	GGWCC	1 cut(s)	705
SmiI	ATTTAAAT	1 cut(s)	30
SsiI	CCGC	2 cut(s)	344, 587
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	722
StyI	CCWWGG	1 cut(s)	326
SwaI	ATTTAAAT	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	53, 340
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	2 cut(s)	730, 739
TauI	GCSGC	2 cut(s)	347, 590
TfiI	GAWTC	1 cut(s)	732
Tru1I	TTAA	8 cut(s)	21, 29, 168, 420, 434, 543, 624, 677
Tru9I	TTAA	8 cut(s)	21, 29, 168, 420, 434, 543, 624, 677
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	5 cut(s)	77, 89, 114, 137, 278
TspDTI	ATGAA	6 cut(s)	233, 266, 418, 642, 695, 728
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.