pycom01g10390

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002732
Physical Location & Seq
Forward (+)
11196090 .. 11198586
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGCTTGTTTTTCACAAAATGGAGCATTCAGCAGGAGAATGGCAACATAGGGCAGCAATTGAGATTACAAAAGATTGGAATGGGGTAGAACAAGTGGTGCTTCAGAACCAGCAAGGGGCTTCGGCACGGGTTAGCTTACTTGGAGGACAGGTCACTTCATGGAGGAATAAGCATGGCGAAGAACTCCTATTCACTAGCAGCAAGGCAATCTTCCAGCCCCCAAAAGCGATGCGAGGAGGAATTCCCATTTGTTTCCCACAGTTTGGGAACTGTGGATCGCTGGAAAAGCATGGTTTTGCAAGGAACAAGGTGTGGGCAATTGATGATAATCCTGAAATGCGTCAACCAAATGATTCCAATGGAAAATCCTTTATTGATCTACTACTAAAACCGTCTGAAGACGACCTGAAGTGTTGGCCCCATAGTTTTGAGTTTCGACTTAGGGTGTCTCTTGCAACAAATGGAGATCTGAACCTGACATCAAGAGTTAGAAATGTCAATGGAAAGCCGTTTAGTTTCTCCTTTGCCTACCACACTTATTTTTCGGTTTCTGATATAAGTTCTGTCCCTAGTGAGGTGAGGATAGAAGGGCTGGAGACACTTGACTACTTAGACAACCTTTGTGAAAGACAACGTTTTACAGAACAAGGAGATGCCATAACTTTTGAGTCTGAGGTCAGTCGACTTTATCTAAGTTCGCCCAATGTGGTTGCAGTCCTTGATCATGAGAAAAAGCGAACATATGTAATCCGAAAGGAAGGACTACCAGATGTTGTTGTTTGGAATCCGTGGGAGAAGAAATCGAAATCTATGGTTGATTTTGGTGACGAGGAGTACAAGCAGATGCTTTGTGTGGATGGGGCAGCGATAGAGAAACCTATCACTTTGAAGCCAGGCAAGGAATGGACAGGGCGACTGCAGCTCTCAGTTGTGCCTTCGAGTTTCTGCAGCGAGCACCTTGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

323

Amino Acids

36.53

Weight (kDa)

6.03

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 31 - 308 3.6e-67 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AccI GTMKAC 1 cut(s) 682
AclI AACGTT 1 cut(s) 634
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 3 cut(s) 86, 417, 428
AfaI GTAC 1 cut(s) 836
AfiI CCNNNNNNNGG 3 cut(s) 115, 263, 574
AgsI TTSAA 1 cut(s) 889
AjnI CCWGG 1 cut(s) 892
AluBI AGCT 2 cut(s) 135, 922
AluI AGCT 2 cut(s) 135, 922
Alw21I GWGCWC 1 cut(s) 957
Alw26I GTCTC 2 cut(s) 453, 590
AlwI GGATC 1 cut(s) 283
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 5 cut(s) 53, 198, 863, 919, 948
ApoI RAATTY 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 589, 836
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 957
BbvI GCAGC 5 cut(s) 65, 210, 875, 931, 960
BccI CCATC 1 cut(s) 851
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 894
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 453, 590
BfaI CTAG 2 cut(s) 195, 570
BfmI CTRYAG 2 cut(s) 917, 946
BglII AGATCT 1 cut(s) 466
BisI GCNGC 5 cut(s) 54, 199, 864, 920, 949
BlsI GCNGC 5 cut(s) 55, 200, 865, 921, 950
Bme1390I CCNGG 1 cut(s) 894
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 894
BmsI GCATC 3 cut(s) 219, 643, 834
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 788
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 263, 574
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 894
BseDI CCNNGG 1 cut(s) 788
BseGI GGATG 1 cut(s) 862
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 115, 263, 574
BseMII CTCAG 2 cut(s) 663, 939
BseRI GAGGAG 2 cut(s) 249, 845
BseXI GCAGC 5 cut(s) 65, 210, 875, 931, 960
BshFI GGCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 957
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 3 cut(s) 115, 263, 574
BsmAI GTCTC 2 cut(s) 453, 590
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 957
Bsp143I GATC 5 cut(s) 275, 376, 466, 721, 961
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 2 cut(s) 664, 938
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 419
BspMAI CTGCAG 2 cut(s) 921, 950
BspPI GGATC 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 788
BssMI GATC 5 cut(s) 275, 376, 466, 721, 961
Bst2UI CCWGG 1 cut(s) 894
Bst4CI ACNGT 3 cut(s) 261, 272, 393
BstC8I GCNNGC 1 cut(s) 953
BstDEI CTNAG 5 cut(s) 440, 610, 672, 692, 925
BstDSI CCRYGG 1 cut(s) 788
BstF5I GGATG 1 cut(s) 862
BstKTI GATC 5 cut(s) 278, 379, 469, 724, 964
BstMAI GTCTC 2 cut(s) 453, 590
BstMBI GATC 5 cut(s) 275, 376, 466, 721, 961
BstMWI GCNNNNNNNGC 2 cut(s) 286, 919
BstNI CCWGG 1 cut(s) 894
BstSCI CCNGG 1 cut(s) 892
BstSFI CTRYAG 2 cut(s) 917, 946
BstV1I GCAGC 5 cut(s) 65, 210, 875, 931, 960
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 788
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 862
Cac8I GCNNGC 1 cut(s) 953
CciI TCATGA 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 417
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 835
CviAII CATG 4 cut(s) 159, 173, 290, 725
CviJI RGCY 8 cut(s) 119, 135, 217, 418, 508, 592, 892, 922
CviKI_1 RGCY 8 cut(s) 119, 135, 217, 418, 508, 592, 892, 922
CviQI GTAC 1 cut(s) 835
DdeI CTNAG 5 cut(s) 440, 610, 672, 692, 925
DpnI GATC 5 cut(s) 277, 378, 468, 723, 963
DpnII GATC 5 cut(s) 275, 376, 466, 721, 961
Eco57I CTGAAG 3 cut(s) 86, 417, 428
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 892
FaeI CATG 4 cut(s) 162, 176, 293, 728
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 194, 226
FaqI GGGAC 1 cut(s) 551
FatI CATG 4 cut(s) 158, 172, 289, 724
FauNDI CATATG 1 cut(s) 742
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 1 cut(s) 682
Fnu4HI GCNGC 5 cut(s) 54, 199, 864, 920, 949
FokI GGATG 1 cut(s) 869
Fsp4HI GCNGC 5 cut(s) 54, 199, 864, 920, 949
FspBI CTAG 2 cut(s) 195, 570
GluI GCNGC 5 cut(s) 54, 199, 864, 920, 949
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 1 cut(s) 418
HgaI GACGC 1 cut(s) 329
Hin1II CATG 4 cut(s) 162, 176, 293, 728
HincII GTYRAC 2 cut(s) 344, 683
HindII GTYRAC 2 cut(s) 344, 683
HinfI GANTC 3 cut(s) 353, 668, 784
HphI GGTGA 2 cut(s) 589, 836
Hpy166II GTNNAC 2 cut(s) 344, 683
Hpy188I TCNGA 6 cut(s) 105, 397, 471, 553, 673, 752
Hpy188III TCNNGA 3 cut(s) 332, 483, 725
Hpy8I GTNNAC 2 cut(s) 344, 683
HpyAV CCTTC 3 cut(s) 581, 752, 945
HpyCH4III ACNGT 3 cut(s) 261, 272, 393
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 5 cut(s) 299, 455, 713, 919, 948
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 919
HpyF3I CTNAG 5 cut(s) 440, 610, 672, 692, 925
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 4 cut(s) 162, 176, 293, 728
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 5 cut(s) 275, 376, 466, 721, 961
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 5 cut(s) 65, 210, 875, 931, 960
LweI GCATC 3 cut(s) 219, 643, 834
MaeI CTAG 2 cut(s) 195, 570
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 151, 824
MalI GATC 5 cut(s) 277, 378, 468, 723, 963
MboI GATC 5 cut(s) 275, 376, 466, 721, 961
MboII GAAGA 4 cut(s) 191, 202, 410, 808
MfeI CAATTG 2 cut(s) 57, 318
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 957
MluCI AATT 3 cut(s) 57, 240, 318
MlyI GAGTC 1 cut(s) 677
MnlI CCTC 8 cut(s) 137, 156, 227, 230, 568, 573, 667, 823
MspR9I CCNGG 1 cut(s) 894
MunI CAATTG 2 cut(s) 57, 318
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 1 cut(s) 894
MwoI GCNNNNNNNGC 2 cut(s) 286, 919
NdeI CATATG 1 cut(s) 742
NdeII GATC 5 cut(s) 275, 376, 466, 721, 961
NlaIII CATG 4 cut(s) 162, 176, 293, 728
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 2 cut(s) 151, 824
PagI TCATGA 1 cut(s) 724
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 353, 784
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 5 cut(s) 55, 200, 865, 921, 950
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
Psp1406I AACGTT 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 892
PspGI CCWGG 1 cut(s) 892
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 417
PstI CTGCAG 2 cut(s) 921, 950
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 836
RsaNI GTAC 1 cut(s) 835
SalI GTCGAC 1 cut(s) 681
SatI GCNGC 5 cut(s) 54, 199, 864, 920, 949
Sau3AI GATC 5 cut(s) 275, 376, 466, 721, 961
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 1 cut(s) 894
SduI GDGCHC 1 cut(s) 957
SfaNI GCATC 3 cut(s) 219, 643, 834
SfcI CTRYAG 2 cut(s) 917, 946
Sse9I AATT 3 cut(s) 57, 240, 318
SspMI CTAG 2 cut(s) 195, 570
StyD4I CCNGG 1 cut(s) 892
TaaI ACNGT 3 cut(s) 261, 272, 393
TaiI ACGT 1 cut(s) 637
TaqI TCGA 4 cut(s) 436, 682, 803, 938
TasI AATT 3 cut(s) 57, 240, 318
TatI WGTACW 1 cut(s) 834
TfiI GAWTC 2 cut(s) 353, 784
TseFI GTSAC 2 cut(s) 151, 824
TseI GCWGC 5 cut(s) 53, 198, 863, 919, 948
Tsp45I GTSAC 2 cut(s) 151, 824
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 777
Van91I CCANNNNNTGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 900
XmiI GTMKAC 1 cut(s) 682
XspI CTAG 2 cut(s) 195, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.