pycom01g13840

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008794
Physical Location & Seq
Reverse (-)
14189899 .. 14194287
4389 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1053 bp
ATGCCTGATTCATCTGTTTCTGTTTCTGAGGCTTCGGTTGGGGGATCTGAAGGCGGTGAGGTAAAGGAGGAACAAGTTGAAGCAAGATGTCAAAGTTCAGAGAGACCAGCTGAAAGAGGCTCAGATGCGTCACCAACCAATTTGAAGGAAACGTCTTCATTGGAGAGTGTTGAAACTTTGAAAAACAGAAAAACAGAATCCACTGAAACTAAACGTAAGAGTGTAAAGCGTACCTTTAAATCAGAAAAGGAGTTCATAGAATTCACCTTGAAGTATCAACAAGCTCTTGCCGAAAGAGATTCGGCCATTTCTGTTCGAGATAAGCTTGAGTCCTTGTGCAGGGAGTTACAACGCCAGAACAAAGTATTAATGGATGAGTGCAAACGGGTGTCAACAGAGGGGCAGAACTTGAGATTAGATTTATCAGTCAAGTTCCAAGATGCAATAAAGGATGTGAGCACTAAACTGGATGAGCAAAAGGAAGAATGTATCTCTCAGCTAAAGGAGAATGAAATGTTAAGAACTAAGCTCCAGCAGCTTACTTATCAGCATGCTCTTTCTGAACAACAATATGAACAGAAGTTAAAGCAGAAATCACTGGAGCTTCAAATTGCTGATTTGAAGACTAAGCAGCATGAAGAGAAATTACTCCAGGAAGAGTCCCAGATGAAATTATATGCTGAACAGGTGTCACAGTTACTATCAACTGAAAAGAATTTGCGCTTACAGTTGACGGCTGATGGGGAGAAATTCCAACAGTTTCAGGACGCATTGTTGAAAAGCAATGAAGTTTTTGAGACATTTAAACAGGAGATTGAAAAGATGGCAAAGTCCATCAAGGAACTCAAGAAGGAAAACTTATTCTTGAAGAGCAAATGTGAGAAAACAGATGTCACTCTTATAGAACTTGTAGACGAGCGTGAACGGTTGAAGAAACAGTTGGTGAAAACAAAGAACCAGAAAGAAATGCTTGAATCATTGTGCAGGTCACTTCAAGCAGAAAGGAAACAGAACTCCACTGGGAGCAACAACTCCGATTCTGTTCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

351

Amino Acids

40.33

Weight (kDa)

6.09

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Taxilin PF09728 48 - 334 2.9e-73 Myosin-like coiled-coil protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 975
AccI GTMKAC 1 cut(s) 912
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 3 cut(s) 260, 715, 749
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 339
AjnI CCWGG 1 cut(s) 651
AjuI GAANNNNNNNTTGG 2 cut(s) 923, 955
AluBI AGCT 7 cut(s) 110, 284, 325, 499, 529, 538, 604
AluI AGCT 7 cut(s) 110, 284, 325, 499, 529, 538, 604
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 97, 791
AlwI GGATC 1 cut(s) 52
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 535, 631
ApoI RAATTY 3 cut(s) 260, 715, 749
AseI ATTAAT 1 cut(s) 368
AspLEI GCGC 1 cut(s) 723
AsuHPI GGTGA 4 cut(s) 68, 123, 256, 955
BarI GAAGNNNNNNTAC 2 cut(s) 630, 662
BbsI GAAGAC 2 cut(s) 147, 629
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 547, 643
BccI CCATC 3 cut(s) 734, 817, 842
BceAI ACGGC 1 cut(s) 750
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 97, 791
BfuAI ACCTGC 1 cut(s) 975
BisI GCNGC 2 cut(s) 536, 632
BlsI GCNGC 2 cut(s) 537, 633
Bme1390I CCNGG 1 cut(s) 653
BmrFI CCNGG 1 cut(s) 653
BmrI ACTGGG 1 cut(s) 1029
BmsI GCATC 2 cut(s) 115, 430
BmuI ACTGGG 1 cut(s) 1029
BpiI GAAGAC 2 cut(s) 147, 629
BpmI CTGGAG 3 cut(s) 515, 620, 635
BpuEI CTTGAG 3 cut(s) 347, 430, 830
BsaI GGTCTC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 3 cut(s) 471, 603, 1024
Bse3DI GCAATG 1 cut(s) 790
BseBI CCWGG 1 cut(s) 653
BseGI GGATG 3 cut(s) 379, 457, 475
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 3 cut(s) 18, 135, 509
BseNI ACTGG 3 cut(s) 471, 603, 1024
BseXI GCAGC 2 cut(s) 547, 643
BsgI GTGCAG 2 cut(s) 358, 1003
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 461
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 97, 791
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 3 cut(s) 19, 134, 508
BspMI ACCTGC 1 cut(s) 975
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 863
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 790
BsrI ACTGG 3 cut(s) 471, 603, 1024
BssMI GATC 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 5 cut(s) 696, 729, 759, 927, 939
Bst6I CTCTTC 3 cut(s) 633, 651, 863
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 5 cut(s) 27, 121, 495, 525, 627
BstENI CCTNNNNNAGG 1 cut(s) 337
BstF5I GGATG 3 cut(s) 379, 457, 475
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 2 cut(s) 97, 791
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 651
BstV1I GCAGC 2 cut(s) 547, 643
BstV2I GAAGAC 2 cut(s) 147, 629
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 3 cut(s) 379, 457, 475
BtsIMutI CAGTG 3 cut(s) 201, 596, 1017
BveI ACCTGC 1 cut(s) 975
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 1 cut(s) 723
CseI GACGC 2 cut(s) 117, 776
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 551, 635
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 5 cut(s) 27, 121, 495, 525, 627
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DraI TTTAAA 2 cut(s) 238, 805
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 633, 651, 863
EarI CTCTTC 3 cut(s) 633, 651, 863
Eco31I GGTCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 651
FaeI CATG 2 cut(s) 554, 638
FaiI YATR 7 cut(s) 257, 552, 573, 636, 676, 678, 902
FalI AAGNNNNNCTT 6 cut(s) 218, 250, 842, 874, 954, 986
FaqI GGGAC 1 cut(s) 646
FatI CATG 2 cut(s) 550, 634
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 2 cut(s) 536, 632
FokI GGATG 3 cut(s) 386, 464, 482
Fsp4HI GCNGC 2 cut(s) 536, 632
GlaI GCGC 1 cut(s) 722
GluI GCNGC 2 cut(s) 536, 632
GsuI CTGGAG 3 cut(s) 515, 620, 635
HaeIII GGCC 1 cut(s) 305
HgaI GACGC 2 cut(s) 117, 776
HhaI GCGC 1 cut(s) 723
Hin1II CATG 2 cut(s) 554, 638
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HincII GTYRAC 2 cut(s) 393, 732
HindII GTYRAC 2 cut(s) 393, 732
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 7 cut(s) 8, 197, 299, 329, 659, 974, 1037
HphI GGTGA 4 cut(s) 68, 123, 256, 955
Hpy166II GTNNAC 4 cut(s) 393, 732, 913, 923
Hpy188I TCNGA 7 cut(s) 28, 49, 100, 124, 244, 562, 1036
Hpy188III TCNNGA 5 cut(s) 317, 764, 847, 865, 1050
Hpy8I GTNNAC 4 cut(s) 393, 732, 913, 923
HpyAV CCTTC 3 cut(s) 44, 139, 844
HpyCH4III ACNGT 5 cut(s) 696, 729, 759, 927, 939
HpyCH4IV ACGT 2 cut(s) 152, 214
HpyCH4V TGCA 4 cut(s) 339, 381, 443, 984
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 5 cut(s) 27, 121, 495, 525, 627
HpySE526I ACGT 2 cut(s) 152, 214
Hsp92II CATG 2 cut(s) 554, 638
HspAI GCGC 1 cut(s) 721
Kzo9I GATC 1 cut(s) 44
LguI GCTCTTC 1 cut(s) 863
LmnI GCTCC 3 cut(s) 534, 601, 1023
Lsp1109I GCAGC 2 cut(s) 547, 643
LweI GCATC 2 cut(s) 115, 430
MaeII ACGT 2 cut(s) 152, 214
MaeIII GTNAC 6 cut(s) 129, 345, 690, 696, 892, 987
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 7 cut(s) 147, 494, 634, 650, 668, 880, 943
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 7 cut(s) 139, 260, 609, 644, 671, 715, 749
MlyI GAGTC 2 cut(s) 338, 668
MmeI TCCRAC 1 cut(s) 778
MnlI CCTC 5 cut(s) 22, 52, 61, 110, 391
MseI TTAA 5 cut(s) 237, 368, 518, 584, 804
MspA1I CMGCKG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 535
NdeII GATC 1 cut(s) 44
NlaIII CATG 2 cut(s) 554, 638
NmuCI GTSAC 4 cut(s) 129, 690, 892, 987
NspI RCATGY 1 cut(s) 554
PaeI GCATGC 1 cut(s) 554
PciSI GCTCTTC 1 cut(s) 863
PfeI GAWTC 5 cut(s) 8, 197, 299, 974, 1037
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 2 cut(s) 537, 633
PleI GAGTC 2 cut(s) 337, 667
PpsI GAGTC 2 cut(s) 337, 667
PshBI ATTAAT 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 863
SaqAI TTAA 5 cut(s) 237, 368, 518, 584, 804
SatI GCNGC 2 cut(s) 536, 632
Sau3AI GATC 1 cut(s) 44
SchI GAGTC 2 cut(s) 338, 668
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 2 cut(s) 115, 430
SmlI CTYRAG 3 cut(s) 326, 409, 845
SmoI CTYRAG 3 cut(s) 326, 409, 845
SphI GCATGC 1 cut(s) 554
Sse9I AATT 7 cut(s) 139, 260, 609, 644, 671, 715, 749
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 651
TaaI ACNGT 5 cut(s) 696, 729, 759, 927, 939
TaiI ACGT 2 cut(s) 155, 217
TaqI TCGA 1 cut(s) 316
TasI AATT 7 cut(s) 139, 260, 609, 644, 671, 715, 749
TfiI GAWTC 5 cut(s) 8, 197, 299, 974, 1037
Tru1I TTAA 5 cut(s) 237, 368, 518, 584, 804
Tru9I TTAA 5 cut(s) 237, 368, 518, 584, 804
TscAI CASTG 3 cut(s) 208, 603, 1024
TseFI GTSAC 4 cut(s) 129, 690, 892, 987
TseI GCWGC 2 cut(s) 535, 631
Tsp45I GTSAC 4 cut(s) 129, 690, 892, 987
TspDTI ATGAA 7 cut(s) 147, 244, 525, 588, 651, 683, 801
TspRI CASTG 3 cut(s) 208, 603, 1024
VspI ATTAAT 1 cut(s) 368
XagI CCTNNNNNAGG 1 cut(s) 337
XapI RAATTY 3 cut(s) 260, 715, 749
XceI RCATGY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.