Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003478

Physical Location & Seq

Genomic Coordinates Reverse (-)

14346439 .. 14348020

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGATGAGCAAAAGGATACGGATGTTGCTGTGGGTAGTGGGTCAGAGTCCACTGTGAGTGTAAGTGGACATGTAGCTGGTGAAACCGTAGCTGGGGCCGAGGCTTGTGTGAGTGAGGGTCAGGTTGAGGGGTCTTTTGTGGAGGATGTTGGTGACGATGAAGGCGGTGATTGTGAGGGGGATGATATAATGGTGGAGGTTCTGGGTTCTAATGTCTATGTTGGTGGAGTTTGCACCAATGGGGATGGGGGCGATGAGGGGGTGGGACGTGATGAGTCGGTTGAGGTTGATACGGGGTCGGAGGGAAATGTGAGATCTTCCGGAGGAGATGGTGGTAAAGTGGGTGAGCTGGATTCTGTGGCTGCAGATGTTAGTTCAACGGTTATAGAAACCCAGGTTGTTCATTTTGAGGAAGCTGAGATGGTTGTGAGGCAGGATGTGGATTCAGAGGAAGTTAATGTTTCGGATGAAAAAGCACAGGATGCCACAGCAGAAAATGGACTTGGGGGTTCCTTCATTGGACCTGTAGGTAGTGAAACACAAGTTATCGTCAGTGAAGTAGTTGTGAGGGAAAGTGTAGAAGTTTCCGGGGGTGGATTGGTGGAGGTTGTGGAACATGAAAAGAAGTTGGTTGTTGGTGAGGTTGATGCACTCAATGATTTGAAGGCACAAAAAGCTGGTGTTTCAGATGATGAAGTATGGAATCCTGGAATTGAAAAAGCTACAGTGACTGTTAATGAAGAAGGTAATCCCAAACCCTCAAGTGAACAAAGCCAAGTTTCTGCTGGTGGTGGTGATGTTGCCGGGGTGGACAATGTAGATATTCTGACTTCCAAAGTTGCAGGTAAGGAAACTGATAAAACTAACGAAAATTCGAGTAAACCAGTTGAAGAACAGCTGGTTAAGATTGAGCCAGTAGGTGGTAGCACCCATAGTGGCAGCAATGTACCTGAAAATTCAGTGTCTTTTCCTATGCCGCCTCAAGTAGTTCTTGGAAGTGACACGGGAGCAACAGGTGCACAAGATTCGGAAAAAAATCAGTTCTTGAAACCTGAAGAGAGTGTAGAGGACATGGTTCATGATATTGCTTTGGTTTCAACTACCTTATCTCTGCCAGCTCAAGTAATGCCGGGAGGTGTAGTTTCAGTAACAGATGGAAGGGGCCTTTTGAATTCTGAAAAAGAACTGCACTTGAAACCTGAAGAGAGTCTAGGCAAGAACACGTTCCATGATACTGTGCTGGTTGAATCAAATACAGAGCAAGAGATGGAAAAGGACAGCCACGGTAATGGTACTGAACAGGTTGGCGTAGATGGAGCAGATCAATCCCTGGAGTCTGAAAAGTGTTTAGAAAAGTCTGCGACTGCTTATGTTGCTCCAGTTCATCCCGATATGGAAGCAGAGAAAGTCAATGAACAAGTGAGTGATGCTGAGGGTGTATTAAATGGAGGGGAACAGATAGAAGATGAAGGGGATATTACTCCCATGGACACTGAGGAGGAGTTAAAGAACAATTTACTGATGCTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

511

Amino Acids

52.9

Weight (kDa)

4.05

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003478)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250
malus_domestica	MD01G1112200.v1.1 MD07G1179800.v1.1
prunus_persica	Prupe.2G219200_v2.0.a1 Prupe.2G219200_v2.0.a1
pyrus_communis	pycom01g14070 pycom07g17330
rosa_chinensis	RchiOBHm_Chr1g0364181
rosa_laevigata	RLG00000027509
rosa_multiflora	Rmu_co8522441.1_g000001 Rmu_sc0000071.1_g000013 Rmu_sc0000071.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292580
rosa_rugosa	Rorug01G0314200 Rorug01G0314200 Rorug01G0314300 Rorug01G0314400
rosa_samantha	Rh1AG321600 Rh1BG284700 Rh1CG301100 Rh1DG316100
rosa_wichuraiana	Rw1G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	833
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	2 cut(s)	165, 977
AcsI	RAATTY	3 cut(s)	871, 955, 1171
AcuI	CTGAAG	2 cut(s)	1074, 1221
AfaI	GTAC	2 cut(s)	948, 1294
AfiI	CCNNNNNNNGG	2 cut(s)	93, 920
AflIII	ACRYGT	2 cut(s)	70, 1221
AgsI	TTSAA	9 cut(s)	378, 664, 716, 890, 1048, 1098, 1171, 1195, 1247
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	393, 706, 1329
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	8 cut(s)	77, 92, 349, 416, 677, 722, 898, 1118
AluI	AGCT	8 cut(s)	77, 92, 349, 416, 677, 722, 898, 1118
Alw21I	GWGCWC	1 cut(s)	1021
Alw44I	GTGCAC	1 cut(s)	1017
AlwNI	CAGNNNCTG	1 cut(s)	731
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	96, 1162
ApaLI	GTGCAC	1 cut(s)	1017
ApeKI	GCWGC	2 cut(s)	362, 939
ApoI	RAATTY	3 cut(s)	871, 955, 1171
Asp700I	GAANNNNTTC	1 cut(s)	1223
AspS9I	GGNCC	3 cut(s)	96, 521, 1162
AsuC2I	CCSGG	3 cut(s)	589, 805, 1131
AsuHPI	GGTGA	6 cut(s)	92, 164, 179, 356, 650, 806
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	1021
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
Bbv12I	GWGCWC	1 cut(s)	1021
BbvCI	CCTCAGC	1 cut(s)	1431
BbvI	GCAGC	2 cut(s)	349, 951
BccI	CCATC	6 cut(s)	239, 323, 415, 1148, 1261, 1307
BcgI	CGANNNNNNTGC	2 cut(s)	1008, 1042
BciT130I	CCWGG	3 cut(s)	395, 708, 1331
BciVI	GTATCC	1 cut(s)	10
BcnI	CCSGG	3 cut(s)	589, 805, 1131
BfaI	CTAG	2 cut(s)	1211, 1531
BfmI	CTRYAG	3 cut(s)	363, 525, 723
BfuAI	ACCTGC	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	3 cut(s)	363, 940, 977
BlsI	GCNGC	3 cut(s)	364, 941, 978
Bme1390I	CCNGG	6 cut(s)	395, 589, 708, 805, 1131, 1331
Bme18I	GGWCC	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	96, 521, 1162
BmiI	GGNNCC	3 cut(s)	97, 511, 1163
BmrFI	CCNGG	6 cut(s)	395, 589, 708, 805, 1131, 1331
BmsI	GCATC	4 cut(s)	472, 637, 1417, 1512
BpmI	CTGGAG	2 cut(s)	1352, 1362
Bpu10I	CCTNAGC	1 cut(s)	1431
BpuEI	CTTGAG	3 cut(s)	745, 966, 1104
BpuMI	CCSGG	3 cut(s)	589, 805, 1131
BsaJI	CCNNGG	7 cut(s)	99, 393, 588, 804, 1282, 1329, 1485
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	1125, 1155
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 920
Bse1I	ACTGG	3 cut(s)	884, 914, 1379
Bse3DI	GCAATG	1 cut(s)	949
BseAI	TCCGGA	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	395, 708, 1331
BseDI	CCNNGG	7 cut(s)	99, 393, 588, 804, 1282, 1329, 1485
BseGI	GGATG	9 cut(s)	10, 28, 151, 187, 250, 442, 472, 487, 1384
BseLI	CCNNNNNNNGG	2 cut(s)	93, 920
BseMI	GCAATG	1 cut(s)	949
BseMII	CTCAG	3 cut(s)	408, 1422, 1485
BseNI	ACTGG	3 cut(s)	884, 914, 1379
BseRI	GAGGAG	3 cut(s)	339, 1511, 1514
BseSI	GKGCMC	1 cut(s)	1021
BseXI	GCAGC	2 cut(s)	349, 951
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	1172
BshFI	GGCC	2 cut(s)	98, 1164
BsiHKAI	GWGCWC	1 cut(s)	1021
BsiSI	CCGG	4 cut(s)	321, 588, 804, 1130
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	93, 920
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	98, 1164
Bsp1286I	GDGCHC	1 cut(s)	1021
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	314, 1321
Bsp19I	CCATGG	1 cut(s)	1485
BspACI	CCGC	2 cut(s)	165, 977
BspANI	GGCC	2 cut(s)	98, 1164
BspCNI	CTCAG	3 cut(s)	409, 1423, 1486
BspEI	TCCGGA	1 cut(s)	320
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	3 cut(s)	97, 511, 1163
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	949
BsrI	ACTGG	3 cut(s)	884, 914, 1379
BssECI	CCNNGG	7 cut(s)	99, 393, 588, 804, 1282, 1329, 1485
BssMI	GATC	2 cut(s)	314, 1321
BssT1I	CCWWGG	1 cut(s)	1485
Bst2UI	CCWGG	3 cut(s)	395, 708, 1331
Bst4CI	ACNGT	7 cut(s)	55, 88, 382, 727, 733, 1237, 1286
Bst6I	CTCTTC	2 cut(s)	1050, 1197
BstAPI	GCANNNNNTGC	2 cut(s)	482, 1016
BstC8I	GCNNGC	1 cut(s)	1116
BstDEI	CTNAG	3 cut(s)	417, 1431, 1494
BstDSI	CCRYGG	2 cut(s)	1282, 1485
BstF5I	GGATG	9 cut(s)	10, 28, 151, 187, 250, 442, 472, 487, 1384
BstKTI	GATC	2 cut(s)	317, 1324
BstMBI	GATC	2 cut(s)	314, 1321
BstMWI	GCNNNNNNNGC	4 cut(s)	482, 674, 1016, 1373
BstNI	CCWGG	3 cut(s)	395, 708, 1331
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	6 cut(s)	393, 587, 706, 803, 1129, 1329
BstSFI	CTRYAG	3 cut(s)	363, 525, 723
BstSLI	GKGCMC	1 cut(s)	1021
BstV1I	GCAGC	2 cut(s)	349, 951
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	1289
BstYI	RGATCY	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	98, 1164
BtgI	CCRYGG	2 cut(s)	1282, 1485
BtgZI	GCGATG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	9 cut(s)	10, 28, 151, 187, 250, 442, 472, 487, 1384
BtsIMutI	CAGTG	5 cut(s)	51, 559, 732, 966, 1491
BveI	ACCTGC	1 cut(s)	833
Cac8I	GCNNGC	1 cut(s)	1116
CaiI	CAGNNNCTG	1 cut(s)	731
CciI	TCATGA	1 cut(s)	1078
Cfr13I	GGNCC	3 cut(s)	96, 521, 1162
Csp6I	GTAC	2 cut(s)	947, 1293
CviAII	CATG	6 cut(s)	71, 617, 1072, 1079, 1229, 1486
CviQI	GTAC	2 cut(s)	947, 1293
DdeI	CTNAG	3 cut(s)	417, 1431, 1494
DpnI	GATC	2 cut(s)	316, 1323
DpnII	GATC	2 cut(s)	314, 1321
Eam1104I	CTCTTC	2 cut(s)	1050, 1197
EarI	CTCTTC	2 cut(s)	1050, 1197
Eco130I	CCWWGG	1 cut(s)	1485
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	1074, 1221
EcoO109I	RGGNCCY	1 cut(s)	1162
EcoRI	GAATTC	1 cut(s)	1171
EcoRII	CCWGG	3 cut(s)	393, 706, 1329
EcoT14I	CCWWGG	1 cut(s)	1485
ErhI	CCWWGG	1 cut(s)	1485
FaeI	CATG	6 cut(s)	74, 620, 1075, 1082, 1232, 1489
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	6 cut(s)	70, 616, 1071, 1078, 1228, 1485
Fnu4HI	GCNGC	3 cut(s)	363, 940, 977
FokI	GGATG	9 cut(s)	17, 35, 158, 194, 257, 449, 479, 494, 1371
Fsp4HI	GCNGC	3 cut(s)	363, 940, 977
FspBI	CTAG	2 cut(s)	1211, 1531
GluI	GCNGC	3 cut(s)	363, 940, 977
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	2 cut(s)	1352, 1362
HaeIII	GGCC	2 cut(s)	98, 1164
HapII	CCGG	4 cut(s)	321, 588, 804, 1130
Hin1II	CATG	6 cut(s)	74, 620, 1075, 1082, 1232, 1489
HinfI	GANTC	9 cut(s)	47, 275, 353, 443, 703, 1025, 1207, 1247, 1334
HpaII	CCGG	4 cut(s)	321, 588, 804, 1130
HphI	GGTGA	6 cut(s)	92, 164, 179, 356, 650, 806
Hpy166II	GTNNAC	6 cut(s)	51, 68, 767, 811, 881, 1019
Hpy188I	TCNGA	9 cut(s)	46, 301, 448, 466, 688, 828, 1030, 1177, 1339
Hpy188III	TCNNGA	4 cut(s)	321, 1045, 1079, 1388
Hpy8I	GTNNAC	6 cut(s)	51, 68, 767, 811, 881, 1019
HpyAV	CCTTC	6 cut(s)	155, 523, 658, 737, 1152, 1463
HpyCH4III	ACNGT	7 cut(s)	55, 88, 382, 727, 733, 1237, 1286
HpyCH4IV	ACGT	2 cut(s)	268, 1223
HpyCH4V	TGCA	6 cut(s)	234, 365, 650, 842, 1019, 1189
HpyF10VI	GCNNNNNNNGC	4 cut(s)	482, 674, 1016, 1373
HpyF3I	CTNAG	3 cut(s)	417, 1431, 1494
HpySE526I	ACGT	2 cut(s)	268, 1223
Hsp92II	CATG	6 cut(s)	74, 620, 1075, 1082, 1232, 1489
Kpn2I	TCCGGA	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	314, 1321
LmnI	GCTCC	3 cut(s)	1007, 1316, 1381
Lsp1109I	GCAGC	2 cut(s)	349, 951
LweI	GCATC	4 cut(s)	472, 637, 1417, 1512
MaeI	CTAG	2 cut(s)	1211, 1531
MaeII	ACGT	2 cut(s)	268, 1223
MaeIII	GTNAC	4 cut(s)	152, 727, 998, 1147
MalI	GATC	2 cut(s)	316, 1323
MboI	GATC	2 cut(s)	314, 1321
MboII	GAAGA	6 cut(s)	309, 752, 902, 1067, 1214, 1475
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	1021
MluCI	AATT	5 cut(s)	711, 871, 955, 1171, 1513
MlyI	GAGTC	4 cut(s)	56, 284, 1216, 1343
MmeI	TCCRAC	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	1223
MseI	TTAA	5 cut(s)	456, 735, 903, 1442, 1505
MslI	CAYNNNNRTG	1 cut(s)	1287
MspA1I	CMGCKG	1 cut(s)	898
MspI	CCGG	4 cut(s)	321, 588, 804, 1130
MspR9I	CCNGG	6 cut(s)	395, 589, 708, 805, 1131, 1331
MvaI	CCWGG	3 cut(s)	395, 708, 1331
MwoI	GCNNNNNNNGC	4 cut(s)	482, 674, 1016, 1373
NciI	CCSGG	3 cut(s)	589, 805, 1131
NcoI	CCATGG	1 cut(s)	1485
NdeII	GATC	2 cut(s)	314, 1321
NlaIII	CATG	6 cut(s)	74, 620, 1075, 1082, 1232, 1489
NlaIV	GGNNCC	3 cut(s)	97, 511, 1163
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	152, 727, 998
NspI	RCATGY	1 cut(s)	74
PagI	TCATGA	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	1223
PfeI	GAWTC	5 cut(s)	353, 443, 703, 1025, 1247
PflMI	CCANNNNNTGG	1 cut(s)	920
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	3 cut(s)	364, 941, 978
PleI	GAGTC	4 cut(s)	55, 283, 1215, 1342
PpsI	GAGTC	4 cut(s)	55, 283, 1215, 1342
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	3 cut(s)	393, 706, 1329
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	3 cut(s)	393, 706, 1329
PspN4I	GGNNCC	3 cut(s)	97, 511, 1163
PspPI	GGNCC	3 cut(s)	96, 521, 1162
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	898
RsaI	GTAC	2 cut(s)	948, 1294
RsaNI	GTAC	2 cut(s)	947, 1293
RseI	CAYNNNNRTG	1 cut(s)	1287
SaqAI	TTAA	5 cut(s)	456, 735, 903, 1442, 1505
SatI	GCNGC	3 cut(s)	363, 940, 977
Sau3AI	GATC	2 cut(s)	314, 1321
Sau96I	GGNCC	3 cut(s)	96, 521, 1162
SchI	GAGTC	4 cut(s)	56, 284, 1216, 1343
ScrFI	CCNGG	6 cut(s)	395, 589, 708, 805, 1131, 1331
SduI	GDGCHC	1 cut(s)	1021
SfaNI	GCATC	4 cut(s)	472, 637, 1417, 1512
SfcI	CTRYAG	3 cut(s)	363, 525, 723
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	1287
SmlI	CTYRAG	3 cut(s)	760, 981, 1119
SmoI	CTYRAG	3 cut(s)	760, 981, 1119
Sse9I	AATT	5 cut(s)	711, 871, 955, 1171, 1513
SsiI	CCGC	2 cut(s)	165, 977
SspMI	CTAG	2 cut(s)	1211, 1531
StyD4I	CCNGG	6 cut(s)	393, 587, 706, 803, 1129, 1329
StyI	CCWWGG	1 cut(s)	1485
TaaI	ACNGT	7 cut(s)	55, 88, 382, 727, 733, 1237, 1286
TaiI	ACGT	2 cut(s)	271, 1226
TaqI	TCGA	1 cut(s)	875
TasI	AATT	5 cut(s)	711, 871, 955, 1171, 1513
TauI	GCSGC	1 cut(s)	979
TfiI	GAWTC	5 cut(s)	353, 443, 703, 1025, 1247
Tru1I	TTAA	5 cut(s)	456, 735, 903, 1442, 1505
Tru9I	TTAA	5 cut(s)	456, 735, 903, 1442, 1505
TscAI	CASTG	5 cut(s)	58, 559, 732, 966, 1498
TseFI	GTSAC	3 cut(s)	152, 727, 998
TseI	GCWGC	2 cut(s)	362, 939
Tsp45I	GTSAC	3 cut(s)	152, 727, 998
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	5 cut(s)	58, 559, 732, 966, 1498
Van91I	CCANNNNNTGG	1 cut(s)	920
VneI	GTGCAC	1 cut(s)	1017
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	871, 955, 1171
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	1223
XspI	CTAG	2 cut(s)	1211, 1531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.