PWWP domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 |
| malus_domestica | MD01G1112200.v1.1 MD07G1179800.v1.1 |
| prunus_persica | Prupe.2G219200_v2.0.a1 Prupe.2G219200_v2.0.a1 |
| pyrus_communis | pycom01g14070 pycom07g17330 |
| rosa_chinensis | RchiOBHm_Chr1g0364181 |
| rosa_laevigata | RLG00000027509 |
| rosa_multiflora | Rmu_co8522441.1_g000001 Rmu_sc0000071.1_g000013 Rmu_sc0000071.1_g000014 |
| rosa_roxburghii | Rroxscaffold_4G00292580 |
| rosa_rugosa | Rorug01G0314200 Rorug01G0314200 Rorug01G0314300 Rorug01G0314400 |
| rosa_samantha | Rh1AG321600 Rh1BG284700 Rh1CG301100 Rh1DG316100 |
| rosa_wichuraiana | Rw1G028520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 770, 1934 |
| Acc36I | ACCTGC | 6 cut(s) | 770, 820, 889, 1934, 2590, 2870 |
| AccB1I | GGYRCC | 3 cut(s) | 85, 2405, 3055 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 914, 1129, 2012, 2387, 3080 |
| AccI | GTMKAC | 3 cut(s) | 1107, 2552, 2910 |
| AciI | CCGC | 5 cut(s) | 236, 317, 845, 2699, 2763 |
| AclWI | GGATC | 5 cut(s) | 930, 1009, 1275, 2602, 2861 |
| AcsI | RAATTY | 4 cut(s) | 625, 931, 1066, 2096 |
| AcuI | CTGAAG | 3 cut(s) | 1383, 2732, 2734 |
| AcyI | GRCGYC | 1 cut(s) | 86 |
| AfaI | GTAC | 6 cut(s) | 154, 543, 1543, 2657, 2734, 2807 |
| AflIII | ACRYGT | 3 cut(s) | 975, 1816, 2159 |
| AhlI | ACTAGT | 1 cut(s) | 155 |
| AjiI | CACGTC | 1 cut(s) | 1817 |
| AjnI | CCWGG | 6 cut(s) | 580, 1036, 1134, 1597, 1743, 2164 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2586, 2618, 2851, 2883 |
| Alw26I | GTCTC | 3 cut(s) | 1558, 2389, 3071 |
| AlwI | GGATC | 5 cut(s) | 930, 1009, 1275, 2602, 2861 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| Ama87I | CYCGRG | 1 cut(s) | 642 |
| AoxI | GGCC | 3 cut(s) | 1131, 1595, 2218 |
| ApoI | RAATTY | 4 cut(s) | 625, 931, 1066, 2096 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1676, 1708 |
| AseI | ATTAAT | 3 cut(s) | 810, 2321, 3141 |
| AspLEI | GCGC | 1 cut(s) | 88 |
| AspS9I | GGNCC | 5 cut(s) | 639, 1120, 1132, 1684, 2219 |
| AsuC2I | CCSGG | 1 cut(s) | 2222 |
| AsuHPI | GGTGA | 8 cut(s) | 44, 743, 1211, 2180, 2481, 2525, 2940, 2984 |
| AvaI | CYCGRG | 1 cut(s) | 642 |
| AvaII | GGWCC | 3 cut(s) | 639, 1120, 1684 |
| BanI | GGYRCC | 3 cut(s) | 85, 2405, 3055 |
| BbsI | GAAGAC | 1 cut(s) | 2219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 591, 625 |
| BciT130I | CCWGG | 6 cut(s) | 582, 1038, 1136, 1599, 1745, 2166 |
| BciVI | GTATCC | 2 cut(s) | 2531, 2934 |
| BclI | TGATCA | 1 cut(s) | 1219 |
| BcnI | CCSGG | 1 cut(s) | 2222 |
| BcoDI | GTCTC | 3 cut(s) | 1558, 2389, 3071 |
| BcuI | ACTAGT | 1 cut(s) | 155 |
| BfaI | CTAG | 8 cut(s) | 156, 848, 1397, 1422, 1713, 2244, 2666, 2796 |
| BfmI | CTRYAG | 4 cut(s) | 594, 1941, 2556, 2904 |
| BfoI | RGCGCY | 1 cut(s) | 89 |
| BfuAI | ACCTGC | 6 cut(s) | 770, 820, 889, 1934, 2590, 2870 |
| BfuI | GTATCC | 2 cut(s) | 2531, 2934 |
| BmcAI | AGTACT | 3 cut(s) | 2657, 2734, 2807 |
| Bme1390I | CCNGG | 7 cut(s) | 582, 1038, 1136, 1599, 1745, 2166, 2222 |
| Bme18I | GGWCC | 3 cut(s) | 639, 1120, 1684 |
| BmeT110I | CYCGRG | 1 cut(s) | 642 |
| BmgBI | CACGTC | 1 cut(s) | 1817 |
| BmgT120I | GGNCC | 5 cut(s) | 639, 1120, 1132, 1684, 2219 |
| BmiI | GGNNCC | 6 cut(s) | 87, 641, 1685, 2003, 2407, 3057 |
| BmrFI | CCNGG | 7 cut(s) | 582, 1038, 1136, 1599, 1745, 2166, 2222 |
| BmrI | ACTGGG | 1 cut(s) | 1440 |
| BmsI | GCATC | 4 cut(s) | 1031, 1177, 1408, 1634 |
| BmuI | ACTGGG | 1 cut(s) | 1440 |
| BpiI | GAAGAC | 1 cut(s) | 2219 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 909, 941 |
| BpmI | CTGGAG | 4 cut(s) | 482, 645, 2328, 3138 |
| Bpu10I | CCTNAGC | 1 cut(s) | 993 |
| BpuEI | CTTGAG | 2 cut(s) | 2222, 2749 |
| BpuMI | CCSGG | 1 cut(s) | 2222 |
| BsaHI | GRCGYC | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 4 cut(s) | 1134, 1589, 1743, 2043 |
| Bse1I | ACTGG | 4 cut(s) | 662, 1446, 2101, 2221 |
| Bse3DI | GCAATG | 2 cut(s) | 1644, 2037 |
| BseBI | CCWGG | 6 cut(s) | 582, 1038, 1136, 1599, 1745, 2166 |
| BseDI | CCNNGG | 4 cut(s) | 1134, 1589, 1743, 2043 |
| BseMI | GCAATG | 2 cut(s) | 1644, 2037 |
| BseMII | CTCAG | 5 cut(s) | 1007, 1337, 1569, 1620, 2192 |
| BseNI | ACTGG | 4 cut(s) | 662, 1446, 2101, 2221 |
| BseRI | GAGGAG | 4 cut(s) | 188, 212, 338, 362 |
| BseYI | CCCAGC | 2 cut(s) | 44, 1895 |
| BsgI | GTGCAG | 3 cut(s) | 867, 2609, 2857 |
| BshFI | GGCC | 3 cut(s) | 1133, 1597, 2220 |
| BshNI | GGYRCC | 3 cut(s) | 85, 2405, 3055 |
| BsiHKCI | CYCGRG | 1 cut(s) | 642 |
| BsiSI | CCGG | 1 cut(s) | 2222 |
| BslFI | GGGAC | 4 cut(s) | 672, 886, 1697, 2165 |
| BsmAI | GTCTC | 3 cut(s) | 1558, 2389, 3071 |
| BsmBI | CGTCTC | 2 cut(s) | 2389, 3071 |
| BsmFI | GGGAC | 4 cut(s) | 672, 886, 1697, 2165 |
| BsmI | GAATGC | 1 cut(s) | 238 |
| BsnI | GGCC | 3 cut(s) | 1133, 1597, 2220 |
| BsoBI | CYCGRG | 1 cut(s) | 642 |
| Bsp19I | CCATGG | 1 cut(s) | 1589 |
| BspACI | CCGC | 5 cut(s) | 236, 317, 845, 2699, 2763 |
| BspANI | GGCC | 3 cut(s) | 1133, 1597, 2220 |
| BspCNI | CTCAG | 5 cut(s) | 1006, 1336, 1568, 1621, 2191 |
| BspHI | TCATGA | 1 cut(s) | 982 |
| BspLI | GGNNCC | 6 cut(s) | 87, 641, 1685, 2003, 2407, 3057 |
| BspMAI | CTGCAG | 1 cut(s) | 1945 |
| BspMI | ACCTGC | 6 cut(s) | 770, 820, 889, 1934, 2590, 2870 |
| BspPI | GGATC | 5 cut(s) | 930, 1009, 1275, 2602, 2861 |
| BspQI | GCTCTTC | 4 cut(s) | 1574, 2254, 2558, 2903 |
| BspT107I | GGYRCC | 3 cut(s) | 85, 2405, 3055 |
| BsrDI | GCAATG | 2 cut(s) | 1644, 2037 |
| BsrI | ACTGG | 4 cut(s) | 662, 1446, 2101, 2221 |
| BssECI | CCNNGG | 4 cut(s) | 1134, 1589, 1743, 2043 |
| BssNI | GRCGYC | 1 cut(s) | 86 |
| BssT1I | CCWWGG | 2 cut(s) | 1589, 2043 |
| Bst2UI | CCWGG | 6 cut(s) | 582, 1038, 1136, 1599, 1745, 2166 |
| Bst6I | CTCTTC | 8 cut(s) | 954, 1092, 1281, 1446, 1574, 2254, 2558, 2903 |
| BstACI | GRCGYC | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 6 cut(s) | 909, 1023, 2058, 2184, 2536, 2928 |
| BstDEI | CTNAG | 8 cut(s) | 993, 1323, 1511, 1555, 1629, 2178, 2273, 3188 |
| BstDSI | CCRYGG | 1 cut(s) | 1589 |
| BstH2I | RGCGCY | 1 cut(s) | 89 |
| BstHHI | GCGC | 1 cut(s) | 88 |
| BstMAI | GTCTC | 3 cut(s) | 1558, 2389, 3071 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 371, 380, 389, 2429, 3038 |
| BstNI | CCWGG | 6 cut(s) | 582, 1038, 1136, 1599, 1745, 2166 |
| BstNSI | RCATGY | 3 cut(s) | 979, 2163, 2186 |
| BstSCI | CCNGG | 7 cut(s) | 580, 1036, 1134, 1597, 1743, 2164, 2220 |
| BstSFI | CTRYAG | 4 cut(s) | 594, 1941, 2556, 2904 |
| BstV2I | GAAGAC | 1 cut(s) | 2219 |
| BstX2I | RGATCY | 3 cut(s) | 922, 2594, 2866 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2108 |
| BstYI | RGATCY | 3 cut(s) | 922, 2594, 2866 |
| BsuI | GTATCC | 2 cut(s) | 2531, 2934 |
| BsuRI | GGCC | 3 cut(s) | 1133, 1597, 2220 |
| BtgI | CCRYGG | 1 cut(s) | 1589 |
| BtrI | CACGTC | 1 cut(s) | 1817 |
| BtsI | GCAGTG | 2 cut(s) | 1763, 2023 |
| BtsIMutI | CAGTG | 9 cut(s) | 591, 624, 676, 1311, 1453, 1763, 2023, 2571, 2895 |
| BveI | ACCTGC | 6 cut(s) | 770, 820, 889, 1934, 2590, 2870 |
| Cac8I | GCNNGC | 6 cut(s) | 909, 1023, 2058, 2184, 2536, 2928 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| CciI | TCATGA | 1 cut(s) | 982 |
| CfoI | GCGC | 1 cut(s) | 88 |
| Cfr13I | GGNCC | 5 cut(s) | 639, 1120, 1132, 1684, 2219 |
| Csp6I | GTAC | 6 cut(s) | 153, 542, 1542, 2656, 2733, 2806 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1300, 1335 |
| CviQI | GTAC | 6 cut(s) | 153, 542, 1542, 2656, 2733, 2806 |
| DdeI | CTNAG | 8 cut(s) | 993, 1323, 1511, 1555, 1629, 2178, 2273, 3188 |
| DinI | GGCGCC | 1 cut(s) | 87 |
| DraI | TTTAAA | 3 cut(s) | 1296, 1719, 2073 |
| Eam1104I | CTCTTC | 8 cut(s) | 954, 1092, 1281, 1446, 1574, 2254, 2558, 2903 |
| EarI | CTCTTC | 8 cut(s) | 954, 1092, 1281, 1446, 1574, 2254, 2558, 2903 |
| Eco130I | CCWWGG | 2 cut(s) | 1589, 2043 |
| Eco47I | GGWCC | 3 cut(s) | 639, 1120, 1684 |
| Eco57I | CTGAAG | 3 cut(s) | 1383, 2732, 2734 |
| Eco88I | CYCGRG | 1 cut(s) | 642 |
| EcoRI | GAATTC | 3 cut(s) | 625, 931, 2096 |
| EcoRII | CCWGG | 6 cut(s) | 580, 1036, 1134, 1597, 1743, 2164 |
| EcoT14I | CCWWGG | 2 cut(s) | 1589, 2043 |
| EcoT22I | ATGCAT | 3 cut(s) | 1046, 1250, 1847 |
| EgeI | GGCGCC | 1 cut(s) | 87 |
| EheI | GGCGCC | 1 cut(s) | 87 |
| ErhI | CCWWGG | 2 cut(s) | 1589, 2043 |
| Esp3I | CGTCTC | 2 cut(s) | 2389, 3071 |
| FaqI | GGGAC | 4 cut(s) | 672, 886, 1697, 2165 |
| FauI | CCCGC | 1 cut(s) | 229 |
| FbaI | TGATCA | 1 cut(s) | 1219 |
| FblI | GTMKAC | 3 cut(s) | 1107, 2552, 2910 |
| FspBI | CTAG | 8 cut(s) | 156, 848, 1397, 1422, 1713, 2244, 2666, 2796 |
| GlaI | GCGC | 1 cut(s) | 87 |
| GsaI | CCCAGC | 2 cut(s) | 48, 1899 |
| GsuI | CTGGAG | 4 cut(s) | 482, 645, 2328, 3138 |
| HaeII | RGCGCY | 1 cut(s) | 89 |
| HaeIII | GGCC | 3 cut(s) | 1133, 1597, 2220 |
| HapII | CCGG | 1 cut(s) | 2222 |
| HhaI | GCGC | 1 cut(s) | 88 |
| Hin1I | GRCGYC | 1 cut(s) | 86 |
| Hin6I | GCGC | 1 cut(s) | 86 |
| HinP1I | GCGC | 1 cut(s) | 86 |
| HinfI | GANTC | 8 cut(s) | 58, 200, 287, 577, 1875, 1910, 1937, 1961 |
| HpaII | CCGG | 1 cut(s) | 2222 |
| HphI | GGTGA | 8 cut(s) | 44, 743, 1211, 2180, 2481, 2525, 2940, 2984 |
| Hpy166II | GTNNAC | 7 cut(s) | 1108, 1171, 1411, 2264, 2553, 2911, 3200 |
| Hpy8I | GTNNAC | 7 cut(s) | 1108, 1171, 1411, 2264, 2553, 2911, 3200 |
| HpyCH4IV | ACGT | 3 cut(s) | 1816, 2260, 3202 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 371, 380, 389, 2429, 3038 |
| HpyF3I | CTNAG | 8 cut(s) | 993, 1323, 1511, 1555, 1629, 2178, 2273, 3188 |
| HpySE526I | ACGT | 3 cut(s) | 1816, 2260, 3202 |
| Hsp92I | GRCGYC | 1 cut(s) | 86 |
| HspAI | GCGC | 1 cut(s) | 86 |
| KasI | GGCGCC | 1 cut(s) | 85 |
| Ksp22I | TGATCA | 1 cut(s) | 1219 |
| LguI | GCTCTTC | 4 cut(s) | 1574, 2254, 2558, 2903 |
| LmnI | GCTCC | 1 cut(s) | 664 |
| LweI | GCATC | 4 cut(s) | 1031, 1177, 1408, 1634 |
| MaeI | CTAG | 8 cut(s) | 156, 848, 1397, 1422, 1713, 2244, 2666, 2796 |
| MaeII | ACGT | 3 cut(s) | 1816, 2260, 3202 |
| MaeIII | GTNAC | 7 cut(s) | 763, 892, 1306, 1357, 2018, 2679, 2780 |
| MfeI | CAATTG | 1 cut(s) | 1789 |
| MflI | RGATCY | 3 cut(s) | 922, 2594, 2866 |
| Mly113I | GGCGCC | 1 cut(s) | 86 |
| MlyI | GAGTC | 3 cut(s) | 67, 209, 296 |
| MmeI | TCCRAC | 4 cut(s) | 979, 2100, 2343, 3123 |
| Mph1103I | ATGCAT | 3 cut(s) | 1046, 1250, 1847 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1406, 1696, 1840 |
| MspA1I | CMGCKG | 4 cut(s) | 374, 392, 2699, 2765 |
| MspI | CCGG | 1 cut(s) | 2222 |
| MspR9I | CCNGG | 7 cut(s) | 582, 1038, 1136, 1599, 1745, 2166, 2222 |
| MssI | GTTTAAAC | 1 cut(s) | 1296 |
| MunI | CAATTG | 1 cut(s) | 1789 |
| Mva1269I | GAATGC | 1 cut(s) | 238 |
| MvaI | CCWGG | 6 cut(s) | 582, 1038, 1136, 1599, 1745, 2166 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 371, 380, 389, 2429, 3038 |
| NarI | GGCGCC | 1 cut(s) | 86 |
| NciI | CCSGG | 1 cut(s) | 2222 |
| NcoI | CCATGG | 1 cut(s) | 1589 |
| NlaIV | GGNNCC | 6 cut(s) | 87, 641, 1685, 2003, 2407, 3057 |
| NmeAIII | GCCGAG | 2 cut(s) | 2434, 3032 |
| NmuCI | GTSAC | 5 cut(s) | 763, 1306, 2018, 2679, 2780 |
| NsiI | ATGCAT | 3 cut(s) | 1046, 1250, 1847 |
| NspI | RCATGY | 3 cut(s) | 979, 2163, 2186 |
| PaeI | GCATGC | 1 cut(s) | 2186 |
| PagI | TCATGA | 1 cut(s) | 982 |
| PaqCI | CACCTGC | 2 cut(s) | 770, 1934 |
| PciI | ACATGT | 2 cut(s) | 975, 2159 |
| PciSI | GCTCTTC | 4 cut(s) | 1574, 2254, 2558, 2903 |
| PctI | GAATGC | 1 cut(s) | 238 |
| PfeI | GAWTC | 5 cut(s) | 577, 1875, 1910, 1937, 1961 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 914, 1129, 2012, 2387, 3080 |
| PfoI | TCCNGGA | 2 cut(s) | 580, 1036 |
| PleI | GAGTC | 3 cut(s) | 66, 208, 295 |
| PluTI | GGCGCC | 1 cut(s) | 89 |
| PmeI | GTTTAAAC | 1 cut(s) | 1296 |
| PpsI | GAGTC | 3 cut(s) | 66, 208, 295 |
| PscI | ACATGT | 2 cut(s) | 975, 2159 |
| PshBI | ATTAAT | 3 cut(s) | 810, 2321, 3141 |
| Psp6I | CCWGG | 6 cut(s) | 580, 1036, 1134, 1597, 1743, 2164 |
| PspFI | CCCAGC | 2 cut(s) | 44, 1895 |
| PspGI | CCWGG | 6 cut(s) | 580, 1036, 1134, 1597, 1743, 2164 |
| PspN4I | GGNNCC | 6 cut(s) | 87, 641, 1685, 2003, 2407, 3057 |
| PspPI | GGNCC | 5 cut(s) | 639, 1120, 1132, 1684, 2219 |
| PstI | CTGCAG | 1 cut(s) | 1945 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| PsuI | RGATCY | 3 cut(s) | 922, 2594, 2866 |
| PvuII | CAGCTG | 2 cut(s) | 374, 392 |
| RsaI | GTAC | 6 cut(s) | 154, 543, 1543, 2657, 2734, 2807 |
| RsaNI | GTAC | 6 cut(s) | 153, 542, 1542, 2656, 2733, 2806 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1406, 1696, 1840 |
| SapI | GCTCTTC | 4 cut(s) | 1574, 2254, 2558, 2903 |
| Sau96I | GGNCC | 5 cut(s) | 639, 1120, 1132, 1684, 2219 |
| ScaI | AGTACT | 3 cut(s) | 2657, 2734, 2807 |
| SchI | GAGTC | 3 cut(s) | 67, 209, 296 |
| ScrFI | CCNGG | 7 cut(s) | 582, 1038, 1136, 1599, 1745, 2166, 2222 |
| SfaNI | GCATC | 4 cut(s) | 1031, 1177, 1408, 1634 |
| SfcI | CTRYAG | 4 cut(s) | 594, 1941, 2556, 2904 |
| SfoI | GGCGCC | 1 cut(s) | 87 |
| SinI | GGWCC | 3 cut(s) | 639, 1120, 1684 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1406, 1696, 1840 |
| SmlI | CTYRAG | 2 cut(s) | 2237, 2728 |
| SmoI | CTYRAG | 2 cut(s) | 2237, 2728 |
| SpeI | ACTAGT | 1 cut(s) | 155 |
| SphI | GCATGC | 1 cut(s) | 2186 |
| SsiI | CCGC | 5 cut(s) | 236, 317, 845, 2699, 2763 |
| SspDI | GGCGCC | 1 cut(s) | 85 |
| SspMI | CTAG | 8 cut(s) | 156, 848, 1397, 1422, 1713, 2244, 2666, 2796 |
| StyD4I | CCNGG | 7 cut(s) | 580, 1036, 1134, 1597, 1743, 2164, 2220 |
| StyI | CCWWGG | 2 cut(s) | 1589, 2043 |
| TaiI | ACGT | 3 cut(s) | 1819, 2263, 3205 |
| TaqI | TCGA | 2 cut(s) | 1051, 1913 |
| TaqII | GACCGA | 3 cut(s) | 1701, 2679, 2787 |
| TatI | WGTACW | 4 cut(s) | 152, 2655, 2732, 2805 |
| TauI | GCSGC | 1 cut(s) | 847 |
| TfiI | GAWTC | 5 cut(s) | 577, 1875, 1910, 1937, 1961 |
| TscAI | CASTG | 9 cut(s) | 598, 624, 676, 1318, 1453, 1763, 2023, 2578, 2895 |
| TseFI | GTSAC | 5 cut(s) | 763, 1306, 2018, 2679, 2780 |
| Tsp45I | GTSAC | 5 cut(s) | 763, 1306, 2018, 2679, 2780 |
| TspGWI | ACGGA | 4 cut(s) | 503, 2057, 2413, 3053 |
| TspRI | CASTG | 9 cut(s) | 598, 624, 676, 1318, 1453, 1763, 2023, 2578, 2895 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 914, 1129, 2012, 2387, 3080 |
| VpaK11BI | GGWCC | 3 cut(s) | 639, 1120, 1684 |
| VspI | ATTAAT | 3 cut(s) | 810, 2321, 3141 |
| XapI | RAATTY | 4 cut(s) | 625, 931, 1066, 2096 |
| XbaI | TCTAGA | 2 cut(s) | 2665, 2795 |
| XceI | RCATGY | 3 cut(s) | 979, 2163, 2186 |
| XmiI | GTMKAC | 3 cut(s) | 1107, 2552, 2910 |
| XspI | CTAG | 8 cut(s) | 156, 848, 1397, 1422, 1713, 2244, 2666, 2796 |
| ZrmI | AGTACT | 3 cut(s) | 2657, 2734, 2807 |
| Zsp2I | ATGCAT | 3 cut(s) | 1046, 1250, 1847 |