Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003478

Physical Location & Seq

Genomic Coordinates Reverse (-)

43190761 .. 43193060

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAACAGTAACAGCACCAGCGCCATGGAAGCAGCTTCTTCTCACTGCCTTGGAATCCAATGCCCACCTCAGGCACTCTTCCTACTTTCAACTCGCAACGATTGGTTCTAATGGCAGACCTTCAAATCGGACGGTGGTTTTCAGGGGATTTCAAGAGGACAGTGATAAGATTCAGATAAACACGGATTGCAGAACTCGTAAGATTGAGGAGCTTAAGCATTGTCCTTTTGCTGAGATATGTTGGTACTTCACTGACTCTTGGGAGCAATTTCGGATCAATGGAACAGTTGATATTATTGATGGATCCAATTCTGATCCCATAAAACTTCAGCAAAGAGAAAAATCTTGGTTTTCCGGTTCTTTGAGATCAAGACTGCAGTATTTGGGACCGAGTCCAGGTCTTCCTAATCTAAGTGAACAACCATCCAATGAAGTCTCTCTAGATCCTTCTACAGGCCCGGTTGGGGCATTTTGTTTGCTTGTTCTAGATCCACATCAGGTCGATTACTTGAATCTGAAGAGTAACCAGAGGCTGTCATTCACATCCACTCCAAGTCCCAATGGAGAAAAGAGCTGGACTTCAGAAAGGGTTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

200

Amino Acids

22.48

Weight (kDa)

6.42

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridox_oxase_2	PF12766	8 - 100	1.5e-32	Pyridoxamine 5'-phosphate oxidase
PNPOx_N	PF01243	22 - 108	1.2e-08	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003478)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250
malus_domestica	MD01G1112200.v1.1 MD07G1179800.v1.1
prunus_persica	Prupe.2G219200_v2.0.a1 Prupe.2G219200_v2.0.a1
pyrus_communis	pycom01g14070 pycom07g17330
rosa_chinensis	RchiOBHm_Chr1g0364181
rosa_laevigata	RLG00000027509
rosa_multiflora	Rmu_co8522441.1_g000001 Rmu_sc0000071.1_g000013 Rmu_sc0000071.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292580
rosa_rugosa	Rorug01G0314200 Rorug01G0314200 Rorug01G0314300 Rorug01G0314400
rosa_samantha	Rh1AG321600 Rh1BG284700 Rh1CG301100 Rh1DG316100
rosa_wichuraiana	Rw1G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	284, 300, 311, 313, 440, 485
AcuI	CTGAAG	3 cut(s)	314, 539, 567
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 466
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	92, 126, 155, 514
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	3 cut(s)	37, 214, 576
AluI	AGCT	3 cut(s)	37, 214, 576
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	6 cut(s)	284, 300, 311, 313, 440, 485
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	389, 458
AsuC2I	CCSGG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	296, 433
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	2 cut(s)	443, 488
BfmI	CTRYAG	2 cut(s)	377, 453
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	399, 461
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	389, 458
BmiI	GGNNCC	2 cut(s)	307, 390
BmrFI	CCNGG	2 cut(s)	399, 461
BpiI	GAAGAC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	26, 51
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 466
Bse21I	CCTNAGG	1 cut(s)	71
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	26, 51
BseGI	GGATG	2 cut(s)	425, 545
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 466
BseMII	CTCAG	2 cut(s)	85, 225
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	459
BsiSI	CCGG	2 cut(s)	357, 461
BslFI	GGGAC	2 cut(s)	402, 543
BslI	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 466
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	2 cut(s)	402, 543
BsnI	GGCC	1 cut(s)	459
Bsp143I	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
Bsp19I	CCATGG	1 cut(s)	26
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	84, 226
BspLI	GGNNCC	2 cut(s)	307, 390
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	6 cut(s)	284, 300, 311, 313, 440, 485
BspTI	CTTAAG	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	26, 51
BssMI	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
BssT1I	CCWWGG	2 cut(s)	26, 51
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	4 cut(s)	10, 136, 164, 289
Bst6I	CTCTTC	2 cut(s)	85, 515
BstAFI	CTTAAG	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	71, 234, 413
BstDSI	CCRYGG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	425, 545
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	6 cut(s)	279, 308, 319, 371, 448, 493
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	397, 459
BstSFI	CTRYAG	2 cut(s)	377, 453
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	3 cut(s)	305, 445, 490
BstXI	CCANNNNNNTGG	1 cut(s)	27
BstYI	RGATCY	3 cut(s)	305, 445, 490
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	425, 545
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	3 cut(s)	45, 169, 252
CaiI	CAGNNNCTG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	389, 458
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	5 cut(s)	37, 214, 459, 535, 576
CviKI_1	RGCY	5 cut(s)	37, 214, 459, 535, 576
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	71, 234, 413
DpnI	GATC	6 cut(s)	278, 307, 318, 370, 447, 492
DpnII	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
Eam1104I	CTCTTC	2 cut(s)	85, 515
EarI	CTCTTC	2 cut(s)	85, 515
Eco130I	CCWWGG	2 cut(s)	26, 51
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	3 cut(s)	314, 539, 567
Eco81I	CCTNAGG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	26, 51
ErhI	CCWWGG	2 cut(s)	26, 51
FaeI	CATG	1 cut(s)	30
FaiI	YATR	3 cut(s)	28, 241, 323
FaqI	GGGAC	2 cut(s)	402, 543
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	412, 532
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	443, 488
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	2 cut(s)	357, 461
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	5 cut(s)	56, 172, 257, 394, 514
HpaII	CCGG	2 cut(s)	357, 461
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	6 cut(s)	132, 177, 276, 316, 519, 586
Hpy188III	TCNNGA	4 cut(s)	155, 372, 443, 488
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	132, 459
HpyCH4III	ACNGT	4 cut(s)	10, 136, 164, 289
HpyCH4V	TGCA	2 cut(s)	192, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	3 cut(s)	71, 234, 413
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
LmnI	GCTCC	2 cut(s)	211, 265
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	443, 488
MaeIII	GTNAC	2 cut(s)	10, 524
MalI	GATC	6 cut(s)	278, 307, 318, 370, 447, 492
MboI	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
MboII	GAAGA	4 cut(s)	32, 72, 395, 532
MflI	RGATCY	3 cut(s)	305, 445, 490
MluCI	AATT	2 cut(s)	269, 310
MlyI	GAGTC	2 cut(s)	251, 403
MnlI	CCTC	4 cut(s)	80, 151, 202, 525
MseI	TTAA	3 cut(s)	216, 594, 601
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	2 cut(s)	357, 461
MspR9I	CCNGG	2 cut(s)	399, 461
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	2 cut(s)	307, 390
PfeI	GAWTC	3 cut(s)	56, 172, 514
PflFI	GACNNNGTC	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	251, 402
PpsI	GAGTC	2 cut(s)	251, 402
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	307, 390
PspPI	GGNCC	2 cut(s)	389, 458
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	305, 445, 490
PsyI	GACNNNGTC	1 cut(s)	393
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	216, 594, 601
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	6 cut(s)	276, 305, 316, 368, 445, 490
Sau96I	GGNCC	2 cut(s)	389, 458
SchI	GAGTC	2 cut(s)	251, 403
ScrFI	CCNGG	2 cut(s)	399, 461
SetI	ASST	7 cut(s)	39, 72, 124, 216, 403, 504, 578
SfcI	CTRYAG	2 cut(s)	377, 453
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	269, 310
SspMI	CTAG	2 cut(s)	443, 488
StyD4I	CCNGG	2 cut(s)	397, 459
StyI	CCWWGG	2 cut(s)	26, 51
TaaI	ACNGT	4 cut(s)	10, 136, 164, 289
TaqI	TCGA	1 cut(s)	504
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	269, 310
TfiI	GAWTC	3 cut(s)	56, 172, 514
Tru1I	TTAA	3 cut(s)	216, 594, 601
Tru9I	TTAA	3 cut(s)	216, 594, 601
TscAI	CASTG	3 cut(s)	52, 169, 259
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	52, 169, 259
Tth111I	GACNNNGTC	1 cut(s)	393
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	453
XbaI	TCTAGA	2 cut(s)	442, 487
XspI	CTAG	2 cut(s)	443, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.