Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003478

Physical Location & Seq

Genomic Coordinates Reverse (-)

19836912 .. 19838385

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTGGAGGTTCTGGGTTCTAATGTCTATGTTGGTGGAGTTTGCACTAGTGGGGATGGGGACAATGAAGGGGTGGGTCATGATGATTCGGTTGAGGTTGATATGGGGTTGGAGGGCAATGTGAGATCTTCTGGAGGAGATGGTGGTGAAATGGGTGAGCTGGATTCGGTGGCTGCAGTTGTTAGTTCAACAGTCATAGAAACCGAGGTTTTTCATTTTGAGGAAGCTGAGATGGTTGTGAGGCAGGATGTGAATTCAGAGGAAGTTAGTGTTTTGGATGAAAAAGCACAGGATGCCACAGCAGAAAATGGAATTCGGGGTTCCTTGATTGGATCTGTAGGTAGTGAAACACAAGATGTTGTCAGTGAAGTAGTTGTGAAGGAAAGTGTAGAAGTTTCCGTGGGAGGATTGGTGGAGGTTGTGGAACAAGAAAGGAAGTTGGTTGTTGGTGAGGTTGATGCACTCAATGATTTGAAGGCACAAAAAGCTGGTTTTTCAGATGATGTAGTATTGAATCCCGGAATTGAAAAAGCTGCAGTGGTTGTTAGTGAAGAAGGTTTGAATCCCGAACCCTCAAGTGAACAAACCAAAGTTTCTGTTGCTAGTGGTGATGTTGCTGGGTTGGACAATGTAGATATTTTGACTTCCGAAGTTGCAGGTAAGGAAACTGATAAAACTAATGAAAATTCAAGTCATCCAGTAGAAGAACAGCTGGTTAAGATTGAGCCAGTGGGTGGCTGCACCCATAGTGGCAGCAATGAACCTGAAGATTCAGTGTCTTCTCCTATGCCGCCTCAAGTAGTTCATGGAAGTGACACGGGAGCAACAGGTGCACAAGATTCTGAAAATTATCAGTTCTTGAAACCTGAAGAGAGCGTAGAGGACATGGTTCATGATATTGCGTTTGTTTCAACTACCTTATCTCTGCCAGCTCAAGTAATTCCTGGAGGTGTAGTTTCAGTAACAGATAAGGGGGGCCTTTTGAATTCCAAAAAGGACCTTCACTTGAAACCTGAAGAGAGTATAGGCAAGAACACGGTCCACGATACTGCACTGGTTGAATCAAATACAGGGCAAGAGATGGAAGTGGACAGACACGTTAATGGTGCTGAACAGGATAGCGTAGATGGAGCAGATCAATCCCTGGAGTCTGGAAGGTGTTTAGAAAAGACTGCGACAGCTTATGTTGATCGAGTTCATCCTGATATTGAAGCGGAGGAAGTGAATGAACAAGTGACTGATGCTGAGGGTGTATTAAATGGAGGGGAACAGATAGAAGATGAAGTGAGACTGTTCAGAGGAGATCACAAGCTGATATCCACATCACTGATAGTGGGGATATTACTCCCATGGACACTGAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

456

Amino Acids

47.93

Weight (kDa)

4.18

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003478)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250 FvH4_7g20250
malus_domestica	MD01G1112200.v1.1 MD07G1179800.v1.1
prunus_persica	Prupe.2G219200_v2.0.a1 Prupe.2G219200_v2.0.a1
pyrus_communis	pycom01g14070 pycom07g17330
rosa_chinensis	RchiOBHm_Chr1g0364181
rosa_laevigata	RLG00000027509
rosa_multiflora	Rmu_co8522441.1_g000001 Rmu_sc0000071.1_g000013 Rmu_sc0000071.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292580
rosa_rugosa	Rorug01G0314200 Rorug01G0314200 Rorug01G0314300 Rorug01G0314400
rosa_samantha	Rh1AG321600 Rh1BG284700 Rh1CG301100 Rh1DG316100
rosa_wichuraiana	Rw1G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	647
AccB7I	CCANNNNNTGG	1 cut(s)	734
AciI	CCGC	2 cut(s)	791, 1214
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	4 cut(s)	253, 312, 685, 985
AcuI	CTGAAG	3 cut(s)	786, 888, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	1096
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	943, 1143
AluBI	AGCT	8 cut(s)	160, 227, 488, 533, 712, 932, 1181, 1312
AluI	AGCT	8 cut(s)	160, 227, 488, 533, 712, 932, 1181, 1312
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	1 cut(s)	1282
Alw44I	GTGCAC	1 cut(s)	831
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	976
ApaLI	GTGCAC	1 cut(s)	831
ApeKI	GCWGC	4 cut(s)	173, 533, 738, 753
ApoI	RAATTY	4 cut(s)	253, 312, 685, 985
AspS9I	GGNCC	3 cut(s)	976, 997, 1039
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	4 cut(s)	158, 167, 461, 620
AvaII	GGWCC	2 cut(s)	997, 1039
BaeGI	GKGCMC	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	835
BbvCI	CCTCAGC	1 cut(s)	1245
BbvI	GCAGC	4 cut(s)	160, 520, 725, 765
BccI	CCATC	5 cut(s)	50, 134, 226, 1075, 1121
BciT130I	CCWGG	2 cut(s)	945, 1145
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	1282
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 603
BfmI	CTRYAG	3 cut(s)	174, 336, 534
BfuAI	ACCTGC	1 cut(s)	647
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	5 cut(s)	174, 534, 739, 754, 791
BlsI	GCNGC	5 cut(s)	175, 535, 740, 755, 792
Bme1390I	CCNGG	3 cut(s)	519, 945, 1145
Bme18I	GGWCC	2 cut(s)	997, 1039
BmgT120I	GGNCC	3 cut(s)	976, 997, 1039
BmiI	GGNNCC	2 cut(s)	322, 977
BmrFI	CCNGG	3 cut(s)	519, 945, 1145
BmsI	GCATC	3 cut(s)	283, 448, 1231
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	3 cut(s)	153, 966, 1166
Bpu10I	CCTNAGC	1 cut(s)	1245
BpuEI	CTTGAG	3 cut(s)	559, 780, 918
BpuMI	CCSGG	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	204, 399, 1143, 1349
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 939, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	3 cut(s)	698, 728, 1059
Bse3DI	GCAATG	2 cut(s)	124, 763
BseBI	CCWGG	2 cut(s)	945, 1145
BseDI	CCNNGG	4 cut(s)	204, 399, 1143, 1349
BseGI	GGATG	6 cut(s)	61, 253, 283, 298, 694, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	2 cut(s)	124, 763
BseMII	CTCAG	3 cut(s)	219, 1236, 1349
BseNI	ACTGG	3 cut(s)	698, 728, 1059
BseRI	GAGGAG	2 cut(s)	150, 1314
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	4 cut(s)	160, 520, 725, 765
BseYI	CCCAGC	1 cut(s)	617
BsgI	GTGCAG	2 cut(s)	724, 1035
BshFI	GGCC	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	1 cut(s)	1282
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	978
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
Bsp19I	CCATGG	1 cut(s)	1349
BspACI	CCGC	2 cut(s)	791, 1214
BspANI	GGCC	1 cut(s)	978
BspCNI	CTCAG	3 cut(s)	220, 1237, 1350
BspHI	TCATGA	2 cut(s)	79, 892
BspLI	GGNNCC	2 cut(s)	322, 977
BspMAI	CTGCAG	2 cut(s)	178, 538
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	124, 763
BsrI	ACTGG	3 cut(s)	698, 728, 1059
BssECI	CCNNGG	4 cut(s)	204, 399, 1143, 1349
BssMI	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
BssT1I	CCWWGG	1 cut(s)	1349
Bst2UI	CCWGG	2 cut(s)	945, 1145
Bst4CI	ACNGT	3 cut(s)	193, 1039, 1293
Bst6I	CTCTTC	2 cut(s)	864, 1011
BstAPI	GCANNNNNTGC	2 cut(s)	293, 830
BstC8I	GCNNGC	1 cut(s)	930
BstDEI	CTNAG	3 cut(s)	228, 1245, 1358
BstDSI	CCRYGG	2 cut(s)	399, 1349
BstF5I	GGATG	6 cut(s)	61, 253, 283, 298, 694, 1198
BstKTI	GATC	5 cut(s)	128, 335, 1138, 1192, 1306
BstMAI	GTCTC	1 cut(s)	1282
BstMBI	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 485, 830
BstNI	CCWGG	2 cut(s)	945, 1145
BstSCI	CCNGG	3 cut(s)	517, 943, 1143
BstSFI	CTRYAG	3 cut(s)	174, 336, 534
BstSLI	GKGCMC	1 cut(s)	835
BstV1I	GCAGC	4 cut(s)	160, 520, 725, 765
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	125, 332
BstYI	RGATCY	2 cut(s)	125, 332
BsuRI	GGCC	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	399, 1349
BtsCI	GGATG	6 cut(s)	61, 253, 283, 298, 694, 1198
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	7 cut(s)	370, 543, 735, 780, 1052, 1325, 1355
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	930
CciI	TCATGA	2 cut(s)	79, 892
Cfr13I	GGNCC	3 cut(s)	976, 997, 1039
CviAII	CATG	5 cut(s)	80, 806, 886, 893, 1350
DdeI	CTNAG	3 cut(s)	228, 1245, 1358
DpnI	GATC	5 cut(s)	127, 334, 1137, 1191, 1305
DpnII	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
Eam1104I	CTCTTC	2 cut(s)	864, 1011
EarI	CTCTTC	2 cut(s)	864, 1011
Eco130I	CCWWGG	1 cut(s)	1349
Eco32I	GATATC	1 cut(s)	1317
Eco47I	GGWCC	2 cut(s)	997, 1039
Eco57I	CTGAAG	3 cut(s)	786, 888, 1035
EcoO109I	RGGNCCY	2 cut(s)	976, 997
EcoRI	GAATTC	3 cut(s)	253, 312, 985
EcoRII	CCWGG	2 cut(s)	943, 1143
EcoRV	GATATC	1 cut(s)	1317
EcoT14I	CCWWGG	1 cut(s)	1349
ErhI	CCWWGG	1 cut(s)	1349
FaeI	CATG	5 cut(s)	83, 809, 889, 896, 1353
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	5 cut(s)	79, 805, 885, 892, 1349
Fnu4HI	GCNGC	5 cut(s)	174, 534, 739, 754, 791
FokI	GGATG	6 cut(s)	68, 260, 290, 305, 681, 1185
Fsp4HI	GCNGC	5 cut(s)	174, 534, 739, 754, 791
FspBI	CTAG	2 cut(s)	48, 603
GluI	GCNGC	5 cut(s)	174, 534, 739, 754, 791
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	3 cut(s)	153, 966, 1166
HaeIII	GGCC	1 cut(s)	978
HapII	CCGG	1 cut(s)	519
Hin1II	CATG	5 cut(s)	83, 809, 889, 896, 1353
HinfI	GANTC	8 cut(s)	86, 164, 514, 562, 770, 839, 1061, 1148
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	4 cut(s)	158, 167, 461, 620
Hpy166II	GTNNAC	4 cut(s)	581, 833, 1042, 1090
Hpy188I	TCNGA	5 cut(s)	259, 499, 649, 844, 1298
Hpy188III	TCNNGA	7 cut(s)	80, 132, 566, 859, 893, 1152, 1202
Hpy8I	GTNNAC	4 cut(s)	581, 833, 1042, 1090
HpyAV	CCTTC	6 cut(s)	62, 373, 469, 548, 1010, 1149
HpyCH4III	ACNGT	3 cut(s)	193, 1039, 1293
HpyCH4IV	ACGT	1 cut(s)	1098
HpyCH4V	TGCA	8 cut(s)	45, 176, 461, 536, 656, 741, 833, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 485, 830
HpyF3I	CTNAG	3 cut(s)	228, 1245, 1358
HpySE526I	ACGT	1 cut(s)	1098
Hsp92II	CATG	5 cut(s)	83, 809, 889, 896, 1353
Kzo9I	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
LmnI	GCTCC	2 cut(s)	821, 1130
Lsp1109I	GCAGC	4 cut(s)	160, 520, 725, 765
LweI	GCATC	3 cut(s)	283, 448, 1231
MaeI	CTAG	2 cut(s)	48, 603
MaeII	ACGT	1 cut(s)	1098
MaeIII	GTNAC	3 cut(s)	812, 961, 1234
MalI	GATC	5 cut(s)	127, 334, 1137, 1191, 1305
MboI	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
MboII	GAAGA	8 cut(s)	120, 563, 716, 771, 779, 881, 1028, 1289
MflI	RGATCY	2 cut(s)	125, 332
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	7 cut(s)	253, 312, 522, 685, 847, 939, 985
MlyI	GAGTC	1 cut(s)	1157
MmeI	TCCRAC	2 cut(s)	90, 603
MseI	TTAA	3 cut(s)	717, 1101, 1256
MslI	CAYNNNNRTG	2 cut(s)	810, 1101
MspA1I	CMGCKG	1 cut(s)	712
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	3 cut(s)	519, 945, 1145
MvaI	CCWGG	2 cut(s)	945, 1145
MwoI	GCNNNNNNNGC	3 cut(s)	293, 485, 830
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	1349
NdeII	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
NlaIII	CATG	5 cut(s)	83, 809, 889, 896, 1353
NlaIV	GGNNCC	2 cut(s)	322, 977
NmuCI	GTSAC	2 cut(s)	812, 1234
PagI	TCATGA	2 cut(s)	79, 892
PfeI	GAWTC	7 cut(s)	86, 164, 514, 562, 770, 839, 1061
PflMI	CCANNNNNTGG	1 cut(s)	734
PfoI	TCCNGGA	2 cut(s)	517, 943
PkrI	GCNGC	5 cut(s)	175, 535, 740, 755, 792
PleI	GAGTC	1 cut(s)	1156
PpsI	GAGTC	1 cut(s)	1156
PpuMI	RGGWCCY	1 cut(s)	997
Psp5II	RGGWCCY	1 cut(s)	997
Psp6I	CCWGG	2 cut(s)	943, 1143
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	943, 1143
PspN4I	GGNNCC	2 cut(s)	322, 977
PspPI	GGNCC	3 cut(s)	976, 997, 1039
PspPPI	RGGWCCY	1 cut(s)	997
PstI	CTGCAG	2 cut(s)	178, 538
PsuI	RGATCY	2 cut(s)	125, 332
PvuII	CAGCTG	1 cut(s)	712
RseI	CAYNNNNRTG	2 cut(s)	810, 1101
SaqAI	TTAA	3 cut(s)	717, 1101, 1256
SatI	GCNGC	5 cut(s)	174, 534, 739, 754, 791
Sau3AI	GATC	5 cut(s)	125, 332, 1135, 1189, 1303
Sau96I	GGNCC	3 cut(s)	976, 997, 1039
SchI	GAGTC	1 cut(s)	1157
ScrFI	CCNGG	3 cut(s)	519, 945, 1145
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	3 cut(s)	283, 448, 1231
SfcI	CTRYAG	3 cut(s)	174, 336, 534
SinI	GGWCC	2 cut(s)	997, 1039
SmiMI	CAYNNNNRTG	2 cut(s)	810, 1101
SmlI	CTYRAG	3 cut(s)	574, 795, 933
SmoI	CTYRAG	3 cut(s)	574, 795, 933
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	7 cut(s)	253, 312, 522, 685, 847, 939, 985
SsiI	CCGC	2 cut(s)	791, 1214
SspMI	CTAG	2 cut(s)	48, 603
StyD4I	CCNGG	3 cut(s)	517, 943, 1143
StyI	CCWWGG	1 cut(s)	1349
TaaI	ACNGT	3 cut(s)	193, 1039, 1293
TaiI	ACGT	1 cut(s)	1101
TaqI	TCGA	1 cut(s)	1192
TasI	AATT	7 cut(s)	253, 312, 522, 685, 847, 939, 985
TauI	GCSGC	1 cut(s)	793
TfiI	GAWTC	7 cut(s)	86, 164, 514, 562, 770, 839, 1061
Tru1I	TTAA	3 cut(s)	717, 1101, 1256
Tru9I	TTAA	3 cut(s)	717, 1101, 1256
TscAI	CASTG	7 cut(s)	370, 543, 735, 780, 1059, 1332, 1362
TseFI	GTSAC	2 cut(s)	812, 1234
TseI	GCWGC	4 cut(s)	173, 533, 738, 753
Tsp45I	GTSAC	2 cut(s)	812, 1234
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	7 cut(s)	370, 543, 735, 780, 1059, 1332, 1362
Van91I	CCANNNNNTGG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	831
VpaK11BI	GGWCC	2 cut(s)	997, 1039
XapI	RAATTY	4 cut(s)	253, 312, 685, 985
XspI	CTAG	2 cut(s)	48, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.