Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

14566015 .. 14568844

Gene Structure 2830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAACCATGGAATAAACTTAGCTCTAGAATTCTCCAACCAAAATCAAAGCAACCCAACTTCCTTTCTTCCCAAACGCAACAGAAAATCAACAGCAGAAGAAGAAAGAGAGCTGCTAAAATAAGCAAACGCAGACCTCTCCAGCTTCTAGTTGTGTTAGTTTTTATAACCGTTTCACCTGAAAGTGAAGAGAGAGAGTCCTGCCGAAACTTAAAAAGCACTTTTTGTAGAAGTTGTTTTGGTTGGCCAGCCATGTCAGCCCTGGTGCTCAAAATGACCACAGCAGCCTCCTCTATATACCCCAAAAAGCCCTACCAAATCCTCTTCAATTCCATCTCCTCTCCCTCCCCTCCCCCAAATCGTAAAATCCTCGTTGCAGCATTATCGCAAACACATAAATACTCCGGCTGCAGGATAATCCCCTGCGCACCATTCCTCCCTTTTCCCCAAAACCCGTCCCCCAGATTCCCTGAATGCTTCTCCGCCTCTTCTTCCTCCCGCAACCGTAGTGACGCTAGTGGGGTTTCCTCCGAAGATCGCGGAGAGTCCTCTGGTGGGTCCGGCTCTGAGTCCGGCCCCGGTGGTGGTGGTGGTGGTGCTCTTATGGCCGATATGGGTTCGGCGAATCATAAAGGCGCCGATTGGTACGACAGCCCATTGTACCCGAACCAAGACGAATTGCTTTCTCCTCTGCAACATCAACAACAAAAACAACAGCAGCTGCAATCCCAATCCTCCTCCAAATTCCTCACCTTGCCCACCATTCTAACACTCGGCCGCGTCGCCTCCGTGCCGGTTCTCGTTAGCACTTTCTATGTCGATAGTTGGTGGGGAACAACTGCCACAACTAGTATTTTCATTGCTGCAGCAATTACTGATTGGCTCGATGGGTATATTGCTCGGAAGATGAGATCAGGATCTGCATTTGGCGCATTTTTGGATCCGGTAGCTGATAAGCTCATGGTTGCAGCGACACTGGTTTTATTGTGTTCTAGGCCTTTGGATGTTGCTATGTTTGGGCAAGTTCCATGGCTCTTTGTTGTTCCTTCAATTGCTATAATTGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCTAAACTTTTAGAGGCTGTAGCTGTAAATAACTTGGGAAAGTGGAAAACGGCCACACAGATGATAGCACTAACTATCCTCTTGGCAACCCGAGACAACAGCCTTGGAAGACCAGAGGTTCTAGTAGCTTCTGGTGTTGTTTTGCTTTATGTTTCAGCAGGCCTTGCTGTATGGTCTTTGGTTGTGTATATGAGCAAGATATGGAAGGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

445

Amino Acids

48.39

Weight (kDa)

9.87

Isoelectric Point (pI)

68.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	251 - 429	8e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
Acc16I	TGCGCA	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	635
AccII	CGCG	2 cut(s)	540, 780
AciI	CCGC	4 cut(s)	483, 499, 540, 778
AclWI	GGATC	3 cut(s)	925, 935, 948
AcoI	YGGCCR	4 cut(s)	245, 606, 775, 1164
AcsI	RAATTY	2 cut(s)	30, 743
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	3 cut(s)	647, 662, 1323
AfiI	CCNNNNNNNGG	3 cut(s)	411, 555, 584
AgsI	TTSAA	2 cut(s)	328, 1050
AhlI	ACTAGT	1 cut(s)	848
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	8 cut(s)	24, 113, 145, 721, 950, 958, 1136, 1241
AluI	AGCT	8 cut(s)	24, 113, 145, 721, 950, 958, 1136, 1241
Alw21I	GWGCWC	2 cut(s)	270, 601
Alw26I	GTCTC	1 cut(s)	1200
AlwI	GGATC	3 cut(s)	925, 935, 948
AlwNI	CAGNNNCTG	2 cut(s)	721, 920
Ama87I	CYCGRG	1 cut(s)	1203
AoxI	GGCC	7 cut(s)	245, 574, 606, 775, 995, 1164, 1273
ApoI	RAATTY	2 cut(s)	30, 743
AspLEI	GCGC	3 cut(s)	428, 638, 932
AspS9I	GGNCC	2 cut(s)	558, 575
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	2 cut(s)	168, 742
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	1228
Bbv12I	GWGCWC	2 cut(s)	270, 601
BbvCI	CCTCAGC	1 cut(s)	1328
BccI	CCATC	2 cut(s)	341, 881
BceAI	ACGGC	1 cut(s)	1179
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	1200
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	6 cut(s)	27, 149, 516, 849, 993, 1235
BfmI	CTRYAG	4 cut(s)	409, 864, 1083, 1131
BfoI	RGCGCY	1 cut(s)	639
Bme1390I	CCNGG	2 cut(s)	263, 579
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	1203
BmgT120I	GGNCC	2 cut(s)	558, 575
BmiI	GGNNCC	5 cut(s)	6, 559, 577, 637, 942
BmrFI	CCNGG	2 cut(s)	263, 579
BpiI	GAAGAC	1 cut(s)	1228
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	1328
BpuMI	CCSGG	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	916
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	8, 261, 577, 1028, 1216
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 555, 584
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	1 cut(s)	981
Bse3DI	GCAATG	1 cut(s)	858
Bse8I	GATNNNNATC	1 cut(s)	916
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	5 cut(s)	8, 261, 577, 1028, 1216
BseGI	GGATG	1 cut(s)	1009
BseJI	GATNNNNATC	1 cut(s)	916
BseLI	CCNNNNNNNGG	3 cut(s)	411, 555, 584
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	3 cut(s)	558, 1121, 1319
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	4 cut(s)	280, 328, 678, 727
BseX3I	CGGCCG	1 cut(s)	775
Bsh1236I	CGCG	2 cut(s)	540, 780
Bsh1285I	CGRYCG	1 cut(s)	778
BshFI	GGCC	7 cut(s)	247, 576, 608, 777, 997, 1166, 1275
BshNI	GGYRCC	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	778
BsiHKAI	GWGCWC	2 cut(s)	270, 601
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	6 cut(s)	405, 561, 573, 579, 794, 944
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	3 cut(s)	411, 555, 584
BsmAI	GTCTC	1 cut(s)	1200
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	7 cut(s)	247, 576, 608, 777, 997, 1166, 1275
BsoBI	CYCGRG	1 cut(s)	1203
Bsp1286I	GDGCHC	2 cut(s)	270, 601
Bsp143I	GATC	4 cut(s)	535, 911, 917, 940
Bsp19I	CCATGG	2 cut(s)	8, 1028
BspACI	CCGC	4 cut(s)	483, 499, 540, 778
BspANI	GGCC	7 cut(s)	247, 576, 608, 777, 997, 1166, 1275
BspCNI	CTCAG	3 cut(s)	559, 1120, 1320
BspFNI	CGCG	2 cut(s)	540, 780
BspLI	GGNNCC	5 cut(s)	6, 559, 577, 637, 942
BspMAI	CTGCAG	3 cut(s)	413, 868, 1087
BspPI	GGATC	3 cut(s)	925, 935, 948
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	858
BsrFI	RCCGGY	1 cut(s)	793
BsrI	ACTGG	1 cut(s)	981
BssAI	RCCGGY	1 cut(s)	793
BssECI	CCNNGG	5 cut(s)	8, 261, 577, 1028, 1216
BssMI	GATC	4 cut(s)	535, 911, 917, 940
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	3 cut(s)	8, 1028, 1216
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	172, 506
Bst6I	CTCTTC	3 cut(s)	183, 329, 493
BstACI	GRCGYC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	1277
BstC8I	GCNNGC	2 cut(s)	249, 1273
BstDEI	CTNAG	4 cut(s)	20, 567, 1107, 1328
BstDSI	CCRYGG	2 cut(s)	8, 1028
BstF5I	GGATG	1 cut(s)	1009
BstFNI	CGCG	2 cut(s)	540, 780
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	3 cut(s)	428, 638, 932
BstKTI	GATC	4 cut(s)	538, 914, 920, 943
BstMAI	GTCTC	1 cut(s)	1200
BstMBI	GATC	4 cut(s)	535, 911, 917, 940
BstMCI	CGRYCG	1 cut(s)	778
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 605, 929, 1277
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	261, 577
BstSFI	CTRYAG	4 cut(s)	409, 864, 1083, 1131
BstUI	CGCG	2 cut(s)	540, 780
BstV2I	GAAGAC	1 cut(s)	1228
BstX2I	RGATCY	2 cut(s)	917, 940
BstYI	RGATCY	2 cut(s)	917, 940
BstZI	CGGCCG	1 cut(s)	775
BsuRI	GGCC	7 cut(s)	247, 576, 608, 777, 997, 1166, 1275
BtgI	CCRYGG	2 cut(s)	8, 1028
BtsCI	GGATG	1 cut(s)	1009
BtsIMutI	CAGTG	1 cut(s)	974
Cac8I	GCNNGC	2 cut(s)	249, 1273
CaiI	CAGNNNCTG	2 cut(s)	721, 920
CfoI	GCGC	3 cut(s)	428, 638, 932
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	2 cut(s)	558, 575
CseI	GACGC	2 cut(s)	521, 769
Csp6I	GTAC	3 cut(s)	646, 661, 1322
CviAII	CATG	5 cut(s)	9, 253, 961, 1029, 1078
CviQI	GTAC	3 cut(s)	646, 661, 1322
DdeI	CTNAG	4 cut(s)	20, 567, 1107, 1328
DinI	GGCGCC	1 cut(s)	637
DpnI	GATC	4 cut(s)	537, 913, 919, 942
DpnII	GATC	4 cut(s)	535, 911, 917, 940
EaeI	YGGCCR	4 cut(s)	245, 606, 775, 1164
EagI	CGGCCG	1 cut(s)	775
Eam1104I	CTCTTC	3 cut(s)	183, 329, 493
EarI	CTCTTC	3 cut(s)	183, 329, 493
EciI	GGCGGA	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	775
Eco130I	CCWWGG	3 cut(s)	8, 1028, 1216
Eco147I	AGGCCT	2 cut(s)	997, 1275
Eco47I	GGWCC	1 cut(s)	558
Eco52I	CGGCCG	1 cut(s)	775
Eco88I	CYCGRG	1 cut(s)	1203
EcoRI	GAATTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	3 cut(s)	8, 1028, 1216
EgeI	GGCGCC	1 cut(s)	637
EheI	GGCGCC	1 cut(s)	637
ErhI	CCWWGG	3 cut(s)	8, 1028, 1216
FaeI	CATG	5 cut(s)	12, 256, 964, 1032, 1081
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	5 cut(s)	8, 252, 960, 1028, 1077
FauI	CCCGC	1 cut(s)	506
FokI	GGATG	1 cut(s)	1016
FspBI	CTAG	6 cut(s)	27, 149, 516, 849, 993, 1235
FspI	TGCGCA	1 cut(s)	427
GlaI	GCGC	3 cut(s)	427, 637, 931
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	7 cut(s)	247, 576, 608, 777, 997, 1166, 1275
HapII	CCGG	6 cut(s)	405, 561, 573, 579, 794, 944
HgaI	GACGC	2 cut(s)	521, 769
HhaI	GCGC	3 cut(s)	428, 638, 932
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	5 cut(s)	12, 256, 964, 1032, 1081
Hin6I	GCGC	3 cut(s)	426, 636, 930
HinP1I	GCGC	3 cut(s)	426, 636, 930
HinfI	GANTC	5 cut(s)	197, 465, 545, 569, 625
HpaII	CCGG	6 cut(s)	405, 561, 573, 579, 794, 944
HphI	GGTGA	2 cut(s)	168, 742
Hpy188I	TCNGA	4 cut(s)	532, 568, 903, 1110
Hpy188III	TCNNGA	2 cut(s)	27, 915
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	2 cut(s)	1056, 1312
HpyCH4III	ACNGT	2 cut(s)	172, 506
HpyCH4V	TGCA	8 cut(s)	377, 411, 694, 724, 866, 923, 968, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 605, 929, 1277
HpyF3I	CTNAG	4 cut(s)	20, 567, 1107, 1328
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	5 cut(s)	12, 256, 964, 1032, 1081
HspAI	GCGC	3 cut(s)	426, 636, 930
KasI	GGCGCC	1 cut(s)	635
Kzo9I	GATC	4 cut(s)	535, 911, 917, 940
MaeI	CTAG	6 cut(s)	27, 149, 516, 849, 993, 1235
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	537, 913, 919, 942
MboI	GATC	4 cut(s)	535, 911, 917, 940
MfeI	CAATTG	1 cut(s)	1050
MflI	RGATCY	2 cut(s)	917, 940
MhlI	GDGCHC	2 cut(s)	270, 601
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	7 cut(s)	30, 328, 677, 743, 870, 1050, 1059
MluNI	TGGCCA	1 cut(s)	247
Mly113I	GGCGCC	1 cut(s)	636
MlyI	GAGTC	3 cut(s)	206, 554, 578
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	247
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	1172
Msp20I	TGGCCA	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	721
MspI	CCGG	6 cut(s)	405, 561, 573, 579, 794, 944
MspR9I	CCNGG	2 cut(s)	263, 579
MunI	CAATTG	1 cut(s)	1050
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	2 cut(s)	540, 780
MwoI	GCNNNNNNNGC	4 cut(s)	257, 605, 929, 1277
NarI	GGCGCC	1 cut(s)	636
NciI	CCSGG	1 cut(s)	579
NcoI	CCATGG	2 cut(s)	8, 1028
NdeII	GATC	4 cut(s)	535, 911, 917, 940
NlaIII	CATG	5 cut(s)	12, 256, 964, 1032, 1081
NlaIV	GGNNCC	5 cut(s)	6, 559, 577, 637, 942
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	509
NsbI	TGCGCA	1 cut(s)	427
PceI	AGGCCT	2 cut(s)	997, 1275
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	465, 625
PleI	GAGTC	3 cut(s)	205, 553, 577
PluTI	GGCGCC	1 cut(s)	639
PpsI	GAGTC	3 cut(s)	205, 553, 577
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	5 cut(s)	6, 559, 577, 637, 942
PspPI	GGNCC	2 cut(s)	558, 575
PstI	CTGCAG	3 cut(s)	413, 868, 1087
PstNI	CAGNNNCTG	2 cut(s)	721, 920
PsuI	RGATCY	2 cut(s)	917, 940
PvuII	CAGCTG	1 cut(s)	721
RsaI	GTAC	3 cut(s)	647, 662, 1323
RsaNI	GTAC	3 cut(s)	646, 661, 1322
RseI	CAYNNNNRTG	1 cut(s)	1172
SaqAI	TTAA	1 cut(s)	212
Sau3AI	GATC	4 cut(s)	535, 911, 917, 940
Sau96I	GGNCC	2 cut(s)	558, 575
SchI	GAGTC	3 cut(s)	206, 554, 578
ScrFI	CCNGG	2 cut(s)	263, 579
SduI	GDGCHC	2 cut(s)	270, 601
SfcI	CTRYAG	4 cut(s)	409, 864, 1083, 1131
SfoI	GGCGCC	1 cut(s)	637
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	1172
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	7 cut(s)	30, 328, 677, 743, 870, 1050, 1059
SseBI	AGGCCT	2 cut(s)	997, 1275
SsiI	CCGC	4 cut(s)	483, 499, 540, 778
SspDI	GGCGCC	1 cut(s)	635
SspMI	CTAG	6 cut(s)	27, 149, 516, 849, 993, 1235
StuI	AGGCCT	2 cut(s)	997, 1275
StyD4I	CCNGG	2 cut(s)	261, 577
StyI	CCWWGG	3 cut(s)	8, 1028, 1216
TaaI	ACNGT	2 cut(s)	172, 506
TaqI	TCGA	2 cut(s)	819, 885
TasI	AATT	7 cut(s)	30, 328, 677, 743, 870, 1050, 1059
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	465, 625
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	981
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	847
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	1 cut(s)	981
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	30, 743
XbaI	TCTAGA	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	6 cut(s)	27, 149, 516, 849, 993, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.