Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Forward (+)

18067374 .. 18069519

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19400.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGACCTGAAATCAAATCATGCTTCTCCTGTTCTTGCTGACCCTCCACCCTTGAGCAAGTCAAGACTTGGGGGTGTCCATACCAGCCTGTTACCATATGCAACTCCAGGAGCAGCTTTCCCGGCAAGTCTATTCCTAACAATCCCTAGGAGGAAGACTGGATTACTTGATGATGTTCGCTCTAGCTCTTGGCTCGATGCCATGAAATCTTCATCGCCTCCTCACAGAAAGATAACGAAGGGTGTTAACAATGAGTCCGGGGCAACAGATACTGATATTGCTTACCACTCATGGATGGTCAAGTATCCATCAGCGCTTACATCTTTTGAGCAAATCTCTAATCATGCCAAAGGCAAGAGAATAGCACTGTTTCTTGATTATGACGGGACTCTTTCACCGATTGTAGATAACCCTGACTGTGCCTTTATGTCTGATGCCATGCGTGCAGCCGTAAAAAGGGTAGCAAAACATTTCCCAACAGCAATTATTAGTGGAAGAAGCCATGACAAGGTATACGAATTTGTAAAACTAAATGAACTGTATTATGCCGGTAGTCATGGAATGGACATAATGGCCCCTGTTATACAATCTATAAACGATGACCAGAGAAACTGTTTTAAGTCAACTGACAAAAAGGGTAAGGGGGTTAACTTGTTCCAGCCTGCGGCTGAATTTTTACCTATGATTAGAGAGGTATTTAAATTGCTTGTTGAAAGTACGAAAGACATCCAAGGAGCTAAAGTTGAGGACAATAAGTTCTGTGTCTCTGTACATTACCGCAATGTAGATGAGAAGAGTTGGCCTGCAGTTGCGCAATGTGTCCACGAAATTCTTAAGGACTACCCACGCTTGCGCTTGACTCATGGGCGAAAGGTTTTGGAGGTTCGACCTACAATAAACTGGGATAAAGGGAAGGCCGTCACATTTTTACTTGAATCTCTCGGGCTAAGTAATTCCGAAGATGTGCTCCCGATATATATTGGTGACGATCGGACAGATGAAGATGCATTCAAGGTCTTGAGGGAAGGAAACCGAGGCTATGGCATTCTAGTCTCGGCTGTGCCCAAGGACAGCAATGCATTTTACTCTCTAAGGGAACCCTTGGAGGTAATGGAGTTTCTCAAGTCACTGGTTTTATGGAGGAAGTCAAGTGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

387

Amino Acids

43.04

Weight (kDa)

8.8

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	513
AciI	CCGC	2 cut(s)	665, 778
AcsI	RAATTY	3 cut(s)	518, 671, 828
AfaI	GTAC	2 cut(s)	718, 771
AfeI	AGCGCT	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	456, 508, 664
AflII	CTTAAG	1 cut(s)	833
AgsI	TTSAA	3 cut(s)	713, 935, 1012
AjnI	CCWGG	1 cut(s)	106
AloI	GAACNNNNNNTCC	2 cut(s)	740, 772
AluBI	AGCT	3 cut(s)	116, 186, 737
AluI	AGCT	3 cut(s)	116, 186, 737
Alw21I	GWGCWC	2 cut(s)	969, 1156
Alw26I	GTCTC	2 cut(s)	769, 1057
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	941
Aor51HI	AGCGCT	1 cut(s)	315
AoxI	GGCC	3 cut(s)	573, 800, 915
ApeKI	GCWGC	2 cut(s)	113, 446
ApoI	RAATTY	3 cut(s)	518, 671, 828
AspA2I	CCTAGG	1 cut(s)	146
AspLEI	GCGC	3 cut(s)	316, 814, 855
AspS9I	GGNCC	2 cut(s)	4, 574
AsuC2I	CCSGG	2 cut(s)	122, 259
AsuHPI	GGTGA	2 cut(s)	387, 995
AvaI	CYCGRG	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	1065
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	969, 1156
BbvI	GCAGC	2 cut(s)	125, 458
BccI	CCATC	2 cut(s)	289, 316
BceAI	ACGGC	2 cut(s)	434, 902
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	122, 259
BcoDI	GTCTC	2 cut(s)	769, 1057
BfaI	CTAG	3 cut(s)	147, 183, 1049
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	3 cut(s)	114, 447, 666
BlnI	CCTAGG	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	115, 448, 667
Bme1390I	CCNGG	3 cut(s)	108, 122, 259
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	2 cut(s)	4, 574
BmiI	GGNNCC	2 cut(s)	576, 1098
BmrFI	CCNGG	3 cut(s)	108, 122, 259
BmrI	ACTGGG	1 cut(s)	910
BmsI	GCATC	3 cut(s)	187, 424, 994
BmuI	ACTGGG	1 cut(s)	910
BpiI	GAAGAC	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	3 cut(s)	73, 1039, 1106
BpuMI	CCSGG	2 cut(s)	122, 259
BsaJI	CCNNGG	6 cut(s)	146, 258, 730, 1033, 1065, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 508, 664
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	163, 905, 1134
Bse3DI	GCAATG	3 cut(s)	787, 821, 1081
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	6 cut(s)	146, 258, 730, 1033, 1065, 1101
BseGI	GGATG	2 cut(s)	300, 726
BseLI	CCNNNNNNNGG	3 cut(s)	456, 508, 664
BseMI	GCAATG	3 cut(s)	787, 821, 1081
BseNI	ACTGG	3 cut(s)	163, 905, 1134
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	1065
BseXI	GCAGC	2 cut(s)	125, 458
BsgI	GTGCAG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	991
BshFI	GGCC	3 cut(s)	575, 802, 917
BsiEI	CGRYCG	1 cut(s)	991
BsiHKAI	GWGCWC	2 cut(s)	969, 1156
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	3 cut(s)	122, 258, 549
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	456, 508, 664
BsmAI	GTCTC	2 cut(s)	769, 1057
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	2 cut(s)	1007, 1044
BsnI	GGCC	3 cut(s)	575, 802, 917
BsoBI	CYCGRG	1 cut(s)	941
Bsp1286I	GDGCHC	3 cut(s)	969, 1065, 1156
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	1 cut(s)	988
BspACI	CCGC	2 cut(s)	665, 778
BspANI	GGCC	3 cut(s)	575, 802, 917
BspLI	GGNNCC	2 cut(s)	576, 1098
BspMAI	CTGCAG	1 cut(s)	808
BspTI	CTTAAG	1 cut(s)	833
BsrDI	GCAATG	3 cut(s)	787, 821, 1081
BsrFI	RCCGGY	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	3 cut(s)	163, 905, 1134
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	6 cut(s)	146, 258, 730, 1033, 1065, 1101
BssMI	GATC	1 cut(s)	988
BssNAI	GTATAC	1 cut(s)	514
BssT1I	CCWWGG	4 cut(s)	146, 730, 1065, 1101
Bst1107I	GTATAC	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	369, 419, 540, 614
Bst6I	CTCTTC	1 cut(s)	788
BstAFI	CTTAAG	1 cut(s)	833
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	4 cut(s)	444, 663, 804, 851
BstDEI	CTNAG	2 cut(s)	947, 1091
BstF5I	GGATG	2 cut(s)	300, 726
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	3 cut(s)	316, 814, 855
BstKTI	GATC	1 cut(s)	991
BstMAI	GTCTC	2 cut(s)	769, 1057
BstMBI	GATC	1 cut(s)	988
BstMCI	CGRYCG	1 cut(s)	991
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 443
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	3 cut(s)	106, 120, 257
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	1065
BstV1I	GCAGC	2 cut(s)	125, 458
BstV2I	GAAGAC	1 cut(s)	161
BstZ17I	GTATAC	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	575, 802, 917
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	300, 726
BtsIMutI	CAGTG	2 cut(s)	365, 1127
Cac8I	GCNNGC	4 cut(s)	444, 663, 804, 851
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	3 cut(s)	316, 814, 855
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	4, 574
Csp6I	GTAC	2 cut(s)	717, 770
CviAII	CATG	8 cut(s)	20, 202, 291, 344, 439, 503, 557, 863
CviQI	GTAC	2 cut(s)	717, 770
DdeI	CTNAG	2 cut(s)	947, 1091
DpnI	GATC	1 cut(s)	990
DpnII	GATC	1 cut(s)	988
DraI	TTTAAA	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Eco130I	CCWWGG	4 cut(s)	146, 730, 1065, 1101
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	4 cut(s)	146, 730, 1065, 1101
EcoT22I	ATGCAT	2 cut(s)	1009, 1081
ErhI	CCWWGG	4 cut(s)	146, 730, 1065, 1101
FaeI	CATG	8 cut(s)	23, 205, 294, 347, 442, 506, 560, 866
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	8 cut(s)	19, 201, 290, 343, 438, 502, 556, 862
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	114, 447, 666
FokI	GGATG	2 cut(s)	307, 713
Fsp4HI	GCNGC	3 cut(s)	114, 447, 666
FspBI	CTAG	3 cut(s)	147, 183, 1049
FspI	TGCGCA	1 cut(s)	813
GlaI	GCGC	3 cut(s)	315, 813, 854
GluI	GCNGC	3 cut(s)	114, 447, 666
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	575, 802, 917
HapII	CCGG	3 cut(s)	122, 258, 549
HhaI	GCGC	3 cut(s)	316, 814, 855
Hin1II	CATG	8 cut(s)	23, 205, 294, 347, 442, 506, 560, 866
Hin6I	GCGC	3 cut(s)	314, 812, 853
HinP1I	GCGC	3 cut(s)	314, 812, 853
HincII	GTYRAC	3 cut(s)	247, 624, 649
HindII	GTYRAC	3 cut(s)	247, 624, 649
HinfI	GANTC	4 cut(s)	254, 388, 859, 935
HpaI	GTTAAC	2 cut(s)	247, 649
HpaII	CCGG	3 cut(s)	122, 258, 549
HphI	GGTGA	2 cut(s)	387, 995
Hpy166II	GTNNAC	5 cut(s)	247, 514, 624, 649, 823
Hpy188I	TCNGA	3 cut(s)	433, 958, 993
Hpy188III	TCNNGA	4 cut(s)	63, 374, 970, 1018
Hpy8I	GTNNAC	5 cut(s)	247, 514, 624, 649, 823
HpyAV	CCTTC	3 cut(s)	232, 907, 1019
HpyCH4III	ACNGT	4 cut(s)	369, 419, 540, 614
HpyCH4V	TGCA	5 cut(s)	101, 446, 806, 1007, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 443
HpyF3I	CTNAG	2 cut(s)	947, 1091
Hsp92II	CATG	8 cut(s)	23, 205, 294, 347, 442, 506, 560, 866
HspAI	GCGC	3 cut(s)	314, 812, 853
KspAI	GTTAAC	2 cut(s)	247, 649
Kzo9I	GATC	1 cut(s)	988
LmnI	GCTCC	3 cut(s)	110, 734, 972
Lsp1109I	GCAGC	2 cut(s)	125, 458
LweI	GCATC	3 cut(s)	187, 424, 994
MaeI	CTAG	3 cut(s)	147, 183, 1049
MaeIII	GTNAC	4 cut(s)	90, 919, 983, 1125
MalI	GATC	1 cut(s)	990
MboI	GATC	1 cut(s)	988
MboII	GAAGA	6 cut(s)	166, 201, 507, 805, 971, 1013
MhlI	GDGCHC	3 cut(s)	969, 1065, 1156
MluCI	AATT	6 cut(s)	483, 518, 671, 701, 828, 952
MlyI	GAGTC	3 cut(s)	263, 382, 853
Mph1103I	ATGCAT	2 cut(s)	1009, 1081
MseI	TTAA	5 cut(s)	246, 618, 648, 699, 834
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	3 cut(s)	122, 258, 549
MspR9I	CCNGG	3 cut(s)	108, 122, 259
Mva1269I	GAATGC	2 cut(s)	1007, 1044
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	122, 443
NciI	CCSGG	2 cut(s)	122, 259
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	988
NlaIII	CATG	8 cut(s)	23, 205, 294, 347, 442, 506, 560, 866
NlaIV	GGNNCC	2 cut(s)	576, 1098
NmeAIII	GCCGAG	1 cut(s)	1034
NmuCI	GTSAC	3 cut(s)	919, 983, 1125
NsbI	TGCGCA	1 cut(s)	813
NsiI	ATGCAT	2 cut(s)	1009, 1081
PctI	GAATGC	2 cut(s)	1007, 1044
PfeI	GAWTC	1 cut(s)	935
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	115, 448, 667
Ple19I	CGATCG	1 cut(s)	991
PleI	GAGTC	3 cut(s)	262, 382, 853
PpsI	GAGTC	3 cut(s)	262, 382, 853
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	576, 1098
PspPI	GGNCC	2 cut(s)	4, 574
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	272
PvuI	CGATCG	1 cut(s)	991
RsaI	GTAC	2 cut(s)	718, 771
RsaNI	GTAC	2 cut(s)	717, 770
SaqAI	TTAA	5 cut(s)	246, 618, 648, 699, 834
SatI	GCNGC	3 cut(s)	114, 447, 666
Sau3AI	GATC	1 cut(s)	988
Sau96I	GGNCC	2 cut(s)	4, 574
SchI	GAGTC	3 cut(s)	263, 382, 853
ScrFI	CCNGG	3 cut(s)	108, 122, 259
SduI	GDGCHC	3 cut(s)	969, 1065, 1156
SfaNI	GCATC	3 cut(s)	187, 424, 994
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	4
SmiI	ATTTAAAT	1 cut(s)	700
SmlI	CTYRAG	4 cut(s)	52, 833, 1018, 1121
SmoI	CTYRAG	4 cut(s)	52, 833, 1018, 1121
Sse9I	AATT	6 cut(s)	483, 518, 671, 701, 828, 952
SsiI	CCGC	2 cut(s)	665, 778
SspMI	CTAG	3 cut(s)	147, 183, 1049
StyD4I	CCNGG	3 cut(s)	106, 120, 257
StyI	CCWWGG	4 cut(s)	146, 730, 1065, 1101
SwaI	ATTTAAAT	1 cut(s)	700
TaaI	ACNGT	4 cut(s)	369, 419, 540, 614
TaqI	TCGA	2 cut(s)	195, 886
TasI	AATT	6 cut(s)	483, 518, 671, 701, 828, 952
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	935
Tru1I	TTAA	5 cut(s)	246, 618, 648, 699, 834
Tru9I	TTAA	5 cut(s)	246, 618, 648, 699, 834
TscAI	CASTG	2 cut(s)	372, 1134
TseFI	GTSAC	3 cut(s)	919, 983, 1125
TseI	GCWGC	2 cut(s)	113, 446
Tsp45I	GTSAC	3 cut(s)	919, 983, 1125
TspDTI	ATGAA	4 cut(s)	201, 218, 549, 1014
TspRI	CASTG	2 cut(s)	372, 1134
Vha464I	CTTAAG	1 cut(s)	833
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	518, 671, 828
XmaJI	CCTAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	3 cut(s)	147, 183, 1049
Zsp2I	ATGCAT	2 cut(s)	1009, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.