Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Forward (+)

49555304 .. 49556834

Gene Structure 1531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0383400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGTAAGTTCACCATTTCCAGCTGCAGTTTCCCCTTCATTTTTCTCCTCTTCCCCTTCTACTCCCTAACCCTAACCCTAACCCTAATTGCAAAACCCATTTCCTCTTCTTCGCTCCAAGCCCTTAACACCACCAACCCCCAAAATTTCGATTCCGAAATTGCCCTCTTCGGCGACGCCGCGGACGGCGGCTCTTACGTGAACCTCACGCGCGGATCGGCCTCAAGCTCCGGTCTTCTCCTCCGCCGAAAGCCCTTTAAAGTCGCGGACGCGAATCTCAGCAATCCGGCGTCGTTTTCGTCCGAATTGATCTTCTCGATCACGCCCGGCAACGGCGATGGTATTGTCGTCGTTTTCGTTCCCGGCGATTTGGGCTCGAGGTTCTCCGGTAAGGGCCCGTTTGGGCTTGACGGTGAGAATCGATTTCTGGGTATTGAATTCGATACTGAAATGAATGAAAATGTGAATGATGTGAATGCGAATCATATAGGGGTGAATGTGGGTAGCTTTGTATCTCTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGTTGGGTGAACCAAGGCCTTATAATCCGATTGTTGCGCATGCCATAGATTTGTTGGCAATGTGGAAAGATAAGGATGTGTATGTAGGGATAAGCTCGTCGAATTCGAATGGCAGTTCCTCGCAGATTAGTAGTGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCGAGGATGCATTCGCTTCCGGTGAATCTGAGGGGTTATTTGGATGATCAGCATGGTGGAAATCCGGGTCTGCATAAGAGGATGGCTTGTCCATTGTCAATTCTTGCTGGGATTATATTCATGACTGGGTGTGGAGCTCTGGTTTCATTTGTCATGCTGTTTTTGTGGGCTATAATTGTTAACAGGCACACGGTTTTCCCTGCTGAAGTGCTCCCAGATGAGTTTCCGGTGAAGCCTAATCCTACGGATTTCAGGTATGAGAAGATCAGTGTAGTTGTAGAGGAAGATGCAGATGCAGATGGTGTTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

369

Amino Acids

40.09

Weight (kDa)

6.09

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_L-type_dom	PF18483	46 - 246	5.4e-07	Legume lectin beta-barrel domain
Lectin_legB	PF00139	49 - 267	7.4e-41	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc16I	TGCGCA	1 cut(s)	666
AccII	CGCG	5 cut(s)	182, 211, 213, 266, 272
AciI	CCGC	6 cut(s)	180, 182, 189, 213, 244, 266
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	4 cut(s)	145, 437, 544, 730
AcuI	CTGAAG	1 cut(s)	1020
AcyI	GRCGYC	2 cut(s)	177, 290
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	437, 544
AluBI	AGCT	5 cut(s)	24, 228, 507, 723, 932
AluI	AGCT	5 cut(s)	24, 228, 507, 723, 932
Alw21I	GWGCWC	2 cut(s)	934, 1008
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	3 cut(s)	219, 394, 644
ApaI	GGGCCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	4 cut(s)	145, 437, 544, 730
AspLEI	GCGC	2 cut(s)	213, 667
AspS9I	GGNCC	2 cut(s)	394, 395
AsuC2I	CCSGG	3 cut(s)	327, 363, 861
AsuHPI	GGTGA	6 cut(s)	4, 425, 505, 647, 829, 1036
AsuII	TTCGAA	2 cut(s)	602, 734
AvaI	CYCGRG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	398
BanII	GRGCYC	3 cut(s)	377, 398, 934
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	934, 1008
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	3 cut(s)	332, 871, 1088
BceAI	ACGGC	2 cut(s)	202, 349
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	3 cut(s)	327, 363, 861
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	3 cut(s)	25, 180, 190
BlsI	GCNGC	3 cut(s)	26, 181, 191
Bme1390I	CCNGG	3 cut(s)	327, 363, 861
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	394, 395
BmiI	GGNNCC	2 cut(s)	396, 795
BmrFI	CCNGG	3 cut(s)	327, 363, 861
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	4 cut(s)	583, 792, 1072, 1078
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	1 cut(s)	227
Bpu14I	TTCGAA	2 cut(s)	602, 734
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	3 cut(s)	327, 363, 861
Bsa29I	ATCGAT	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	199
BsaHI	GRCGYC	2 cut(s)	177, 290
BsaJI	CCNNGG	3 cut(s)	180, 641, 797
BsaWI	WCCGGW	4 cut(s)	230, 386, 814, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	925
Bse3DI	GCAATG	1 cut(s)	693
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	3 cut(s)	180, 641, 797
BseGI	GGATG	5 cut(s)	709, 789, 807, 844, 882
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	292, 815
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	2 cut(s)	38, 230
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	902
Bsh1236I	CGCG	5 cut(s)	182, 211, 213, 266, 272
BshFI	GGCC	3 cut(s)	221, 396, 646
BshVI	ATCGAT	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	934, 1008
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	8 cut(s)	231, 287, 327, 363, 387, 815, 860, 1022
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmI	GAATGC	2 cut(s)	481, 805
BsnI	GGCC	3 cut(s)	221, 396, 646
BsoBI	CYCGRG	1 cut(s)	376
Bsp119I	TTCGAA	2 cut(s)	602, 734
Bsp120I	GGGCCC	1 cut(s)	394
Bsp1286I	GDGCHC	4 cut(s)	377, 398, 934, 1008
Bsp143I	GATC	5 cut(s)	215, 309, 318, 841, 1059
BspACI	CCGC	6 cut(s)	180, 182, 189, 213, 244, 266
BspANI	GGCC	3 cut(s)	221, 396, 646
BspCNI	CTCAG	2 cut(s)	291, 816
BspDI	ATCGAT	1 cut(s)	421
BspFNI	CGCG	5 cut(s)	182, 211, 213, 266, 272
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	396, 795
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	223
BspT104I	TTCGAA	2 cut(s)	602, 734
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	925
BssECI	CCNNGG	3 cut(s)	180, 641, 797
BssMI	GATC	5 cut(s)	215, 309, 318, 841, 1059
BssNI	GRCGYC	2 cut(s)	177, 290
BssT1I	CCWWGG	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	413, 523, 988
Bst6I	CTCTTC	3 cut(s)	56, 112, 173
BstACI	GRCGYC	2 cut(s)	177, 290
BstBAI	YACGTR	1 cut(s)	199
BstBI	TTCGAA	2 cut(s)	602, 734
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	2 cut(s)	278, 824
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	5 cut(s)	709, 789, 807, 844, 882
BstFNI	CGCG	5 cut(s)	182, 211, 213, 266, 272
BstHHI	GCGC	2 cut(s)	213, 667
BstKTI	GATC	5 cut(s)	218, 312, 321, 844, 1062
BstMBI	GATC	5 cut(s)	215, 309, 318, 841, 1059
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	325, 361, 859
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	398
BstUI	CGCG	5 cut(s)	182, 211, 213, 266, 272
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	221, 396, 646
BsuTUI	ATCGAT	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	5 cut(s)	709, 789, 807, 844, 882
BtsIMutI	CAGTG	1 cut(s)	1069
Cac8I	GCNNGC	1 cut(s)	669
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	2 cut(s)	213, 667
Cfr13I	GGNCC	2 cut(s)	394, 395
Cfr42I	CCGCGG	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	421
CseI	GACGC	3 cut(s)	185, 278, 279
CviAII	CATG	4 cut(s)	668, 848, 916, 949
DdeI	CTNAG	2 cut(s)	278, 824
DpnI	GATC	5 cut(s)	217, 311, 320, 843, 1061
DpnII	GATC	5 cut(s)	215, 309, 318, 841, 1059
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	56, 112, 173
EarI	CTCTTC	3 cut(s)	56, 112, 173
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	932
Eco130I	CCWWGG	1 cut(s)	641
Eco147I	AGGCCT	1 cut(s)	646
Eco24I	GRGCYC	3 cut(s)	377, 398, 934
Eco53kI	GAGCTC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	932
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	2 cut(s)	437, 730
EcoT14I	CCWWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	807
EcoT38I	GRGCYC	3 cut(s)	377, 398, 934
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	4 cut(s)	671, 851, 919, 952
FatI	CATG	4 cut(s)	667, 847, 915, 948
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	3 cut(s)	25, 180, 190
FokI	GGATG	5 cut(s)	716, 796, 814, 851, 889
FriOI	GRGCYC	3 cut(s)	377, 398, 934
Fsp4HI	GCNGC	3 cut(s)	25, 180, 190
FspBI	CTAG	1 cut(s)	597
FspI	TGCGCA	1 cut(s)	666
GlaI	GCGC	2 cut(s)	212, 666
GluI	GCNGC	3 cut(s)	25, 180, 190
GsaI	CCCAGC	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	221, 396, 646
HapII	CCGG	8 cut(s)	231, 287, 327, 363, 387, 815, 860, 1022
HgaI	GACGC	3 cut(s)	185, 278, 279
HhaI	GCGC	2 cut(s)	213, 667
Hin1I	GRCGYC	2 cut(s)	177, 290
Hin1II	CATG	4 cut(s)	671, 851, 919, 952
Hin6I	GCGC	2 cut(s)	211, 665
HinP1I	GCGC	2 cut(s)	211, 665
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	5 cut(s)	152, 274, 418, 481, 820
HpaI	GTTAAC	1 cut(s)	976
HpaII	CCGG	8 cut(s)	231, 287, 327, 363, 387, 815, 860, 1022
HphI	GGTGA	6 cut(s)	4, 425, 505, 647, 829, 1036
Hpy166II	GTNNAC	4 cut(s)	12, 202, 638, 976
Hpy188I	TCNGA	6 cut(s)	157, 304, 519, 657, 798, 825
Hpy188III	TCNNGA	2 cut(s)	316, 916
Hpy8I	GTNNAC	4 cut(s)	12, 202, 638, 976
Hpy99I	CGWCG	4 cut(s)	179, 295, 353, 730
HpyAV	CCTTC	2 cut(s)	46, 67
HpyCH4III	ACNGT	3 cut(s)	413, 523, 988
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	7 cut(s)	27, 92, 539, 805, 868, 1085, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	2 cut(s)	278, 824
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	2 cut(s)	177, 290
Hsp92II	CATG	4 cut(s)	671, 851, 919, 952
HspAI	GCGC	2 cut(s)	211, 665
Ksp22I	TGATCA	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	976
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	5 cut(s)	215, 309, 318, 841, 1059
LmnI	GCTCC	4 cut(s)	120, 233, 929, 1011
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	4 cut(s)	583, 792, 1072, 1078
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	5 cut(s)	217, 311, 320, 843, 1061
MboI	GATC	5 cut(s)	215, 309, 318, 841, 1059
MboII	GAAGA	8 cut(s)	43, 99, 102, 160, 227, 304, 1069, 1091
MhlI	GDGCHC	4 cut(s)	377, 398, 934, 1008
MluCI	AATT	9 cut(s)	87, 145, 159, 305, 437, 544, 730, 894, 969
Mph1103I	ATGCAT	1 cut(s)	807
MseI	TTAA	5 cut(s)	126, 258, 555, 975, 1101
MspA1I	CMGCKG	2 cut(s)	24, 182
MspI	CCGG	8 cut(s)	231, 287, 327, 363, 387, 815, 860, 1022
MspR9I	CCNGG	3 cut(s)	327, 363, 861
Mva1269I	GAATGC	2 cut(s)	481, 805
MvnI	CGCG	5 cut(s)	182, 211, 213, 266, 272
MwoI	GCNNNNNNNGC	1 cut(s)	372
NciI	CCSGG	3 cut(s)	327, 363, 861
NdeII	GATC	5 cut(s)	215, 309, 318, 841, 1059
NlaIII	CATG	4 cut(s)	671, 851, 919, 952
NlaIV	GGNNCC	2 cut(s)	396, 795
NsbI	TGCGCA	1 cut(s)	666
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	1 cut(s)	671
NspV	TTCGAA	2 cut(s)	602, 734
PaeI	GCATGC	1 cut(s)	671
PaeR7I	CTCGAG	1 cut(s)	376
PagI	TCATGA	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 363, 731
PctI	GAATGC	2 cut(s)	481, 805
PfeI	GAWTC	5 cut(s)	152, 274, 418, 481, 820
PkrI	GCNGC	3 cut(s)	26, 181, 191
Ppu21I	YACGTR	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	934
PspFI	CCCAGC	1 cut(s)	902
PspN4I	GGNNCC	2 cut(s)	396, 795
PspOMI	GGGCCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	394, 395
PspXI	VCTCGAGB	1 cut(s)	376
PstI	CTGCAG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	934
SacII	CCGCGG	1 cut(s)	183
SaqAI	TTAA	5 cut(s)	126, 258, 555, 975, 1101
SatI	GCNGC	3 cut(s)	25, 180, 190
Sau3AI	GATC	5 cut(s)	215, 309, 318, 841, 1059
Sau96I	GGNCC	2 cut(s)	394, 395
ScrFI	CCNGG	3 cut(s)	327, 363, 861
SduI	GDGCHC	4 cut(s)	377, 398, 934, 1008
SfaNI	GCATC	4 cut(s)	583, 792, 1072, 1078
SfcI	CTRYAG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	376
Sfr303I	CCGCGG	1 cut(s)	183
SfuI	TTCGAA	2 cut(s)	602, 734
SgrBI	CCGCGG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	223, 376
SmoI	CTYRAG	2 cut(s)	223, 376
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	9 cut(s)	87, 145, 159, 305, 437, 544, 730, 894, 969
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	6 cut(s)	180, 182, 189, 213, 244, 266
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	934
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	3 cut(s)	325, 361, 859
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	3 cut(s)	413, 523, 988
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	8 cut(s)	150, 317, 377, 421, 441, 602, 728, 734
TasI	AATT	9 cut(s)	87, 145, 159, 305, 437, 544, 730, 894, 969
TauI	GCSGC	2 cut(s)	182, 192
TfiI	GAWTC	5 cut(s)	152, 274, 418, 481, 820
Tru1I	TTAA	5 cut(s)	126, 258, 555, 975, 1101
Tru9I	TTAA	5 cut(s)	126, 258, 555, 975, 1101
TscAI	CASTG	1 cut(s)	1069
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	6 cut(s)	28, 467, 471, 587, 904, 930
TspGWI	ACGGA	1 cut(s)	1055
TspRI	CASTG	1 cut(s)	1069
XapI	RAATTY	4 cut(s)	145, 437, 544, 730
XceI	RCATGY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XhoI	CTCGAG	1 cut(s)	376
XspI	CTAG	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.