Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Forward (+)

62260126 .. 62265986

Gene Structure 5861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGACCTGAAATCAAACCATACTTCTCCTGTTCTCACTGATCCTGCGCCTTTAGGCAAGTCAAGACTTGGCGTACATTCCAGTCTGTTAACATATTCAGGGTCAGGAACAGCTTTTCCAGCACTCTTAACCATCCCTAGGAGGAAGAATGGATTTCTTGATGATGTTCGCTCCAGCTCTTGGCTTGATGCTATGAAATCTTCATCGCCTCCTCACAGAAAGATAACTAAGGATGTTAACAATGACTCTCCAGCAACTGAGTATGATATTGCCTATCGCACATGGATGGTTAAGTATCCATCAGCTCTTACATCTTTTGAGCAAATCACTAATTATGCCAAGGGCAAAAGAATAGCATTGTTTCTCGATTATGATGGGACTCTTTCGCCAATTGTAGATAACCCTGACTGTGCCTTTATGTCTGATGCTATGCGAAGGGCTGTAAGAAGAGTGGCAAAACATTTCCCAACAGCAATAATTAGTGGAAGAAGCCATGACAAGGTATACGAGTTTGTTGGACTAAATGAACTATATTATGCGGGTAGTCATGGGATGGACATAATGGGCCCTGTTAGACAATCAGTAGTTGGTGACCATAGACATGGCTTTCGGTCTACTGACAGACAGGGCAAGGATGTTAATCTGTTCCAGCCTGCAGCAGAGTTTTTACCTATGATTGGCGAGGTTCTTAAATCCCTAGTAGAAACTACCAAAGACATTGAAGGAGCTAAAGTTGAGAATAACAAGTTCTGTGTCTCTGTACACTACCGCAATGTAGATGAGAAGGTAATCTCAATTATACTGAGTCAGTGGGATTTTCTCTCTCTTTATTTAGCCCAGCAGTGGGACCATAACAAAACTAATACTTCTTGTTTACCTTTATTTACTTTACACTTTTGTTTCCAGTATTGGGCTGTAGTTGCACAGCGTGTTCATGACATTCTTAAAAACTACCCACGCCTGCGGTTGACTCATGGACGGAAGGTTTTAGAGGTCCGACCAGTGATAAATTGGGATAAAGGGAAGGCAGTCACATTTTTACTTGAATCTCTTGGGCTAAGTGATTGTGAAGATGTGCTCCCAATATATATTGGAGATGACCGCACAGATGAAGATGCATTCAAGGTTCTGAGGGAAGGAAACAGGGGTTATGGCATTTTAGTCTCTGCTGTGCCAAAGGAAAGCAATGCGTTTTACTCACTAAGGGACCCCTCAGAGGTGATGGAGTTTCTGAAGTCACTGGTGATATGGAGGAAGTCAAGTGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

423

Amino Acids

47.82

Weight (kDa)

8.6

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	121 - 262	6.3e-37	Trehalose-phosphatase
Trehalose_PPase	PF02358	306 - 405	1.3e-27	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	504, 614
AciI	CCGC	4 cut(s)	539, 769, 964, 1102
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	1253
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	2 cut(s)	75, 762
AfiI	CCNNNNNNNGG	8 cut(s)	138, 180, 499, 677, 843, 844, 910, 1216
AgsI	TTSAA	3 cut(s)	722, 1046, 1123
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	113, 177, 305, 728
AluI	AGCT	4 cut(s)	113, 177, 305, 728
Alw21I	GWGCWC	2 cut(s)	1080, 1267
Alw26I	GTCTC	2 cut(s)	760, 1168
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	565
ApaI	GGGCCC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	656
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	6 cut(s)	4, 565, 566, 847, 994, 1207
AsuHPI	GGTGA	3 cut(s)	602, 1231, 1255
AvaII	GGWCC	4 cut(s)	4, 847, 994, 1207
AvrII	CCTAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	569
Bbv12I	GWGCWC	2 cut(s)	1080, 1267
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	6 cut(s)	140, 280, 307, 368, 547, 1216
BciVI	GTATCC	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	760, 1168
BfaI	CTAG	2 cut(s)	138, 698
BfmI	CTRYAG	2 cut(s)	654, 915
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	657
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	658
Bme18I	GGWCC	4 cut(s)	4, 847, 994, 1207
BmgT120I	GGNCC	6 cut(s)	4, 565, 566, 847, 994, 1207
BmiI	GGNNCC	4 cut(s)	567, 848, 1208, 1209
BmsI	GCATC	3 cut(s)	178, 415, 1105
BpmI	CTGGAG	2 cut(s)	157, 234
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	137, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	8 cut(s)	138, 180, 499, 677, 843, 844, 910, 1216
Bse1I	ACTGG	4 cut(s)	81, 904, 1001, 1245
Bse3DI	GCAATG	2 cut(s)	778, 1192
Bse8I	GATNNNNATC	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	137, 339
BseGI	GGATG	5 cut(s)	132, 238, 291, 558, 640
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	8 cut(s)	138, 180, 499, 677, 843, 844, 910, 1216
BseMI	GCAATG	2 cut(s)	778, 1192
BseMII	CTCAG	4 cut(s)	249, 794, 1121, 1227
BseNI	ACTGG	4 cut(s)	81, 904, 1001, 1245
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	668
BseYI	CCCAGC	1 cut(s)	837
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	1080, 1267
BslFI	GGGAC	3 cut(s)	391, 860, 1220
BslI	CCNNNNNNNGG	8 cut(s)	138, 180, 499, 677, 843, 844, 910, 1216
BsmAI	GTCTC	2 cut(s)	760, 1168
BsmFI	GGGAC	3 cut(s)	391, 860, 1220
BsmI	GAATGC	1 cut(s)	1118
BsnI	GGCC	1 cut(s)	567
Bsp120I	GGGCCC	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	569, 1080, 1267
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	4 cut(s)	539, 769, 964, 1102
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	4 cut(s)	250, 795, 1122, 1226
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	4 cut(s)	567, 848, 1208, 1209
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	35
BsrDI	GCAATG	2 cut(s)	778, 1192
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	81, 904, 1001, 1245
BssECI	CCNNGG	2 cut(s)	137, 339
BssMI	GATC	1 cut(s)	40
BssNAI	GTATAC	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	137, 339
Bst1107I	GTATAC	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	442
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	654, 962
BstDEI	CTNAG	7 cut(s)	228, 258, 803, 1058, 1130, 1202, 1213
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	5 cut(s)	132, 238, 291, 558, 640
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	760, 1168
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 920
BstPI	GGTNACC	1 cut(s)	590
BstSFI	CTRYAG	2 cut(s)	654, 915
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstZ17I	GTATAC	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	5 cut(s)	132, 238, 291, 558, 640
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	5 cut(s)	36, 815, 848, 1008, 1238
Cac8I	GCNNGC	2 cut(s)	654, 962
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	934
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	6 cut(s)	4, 565, 566, 847, 994, 1207
Csp6I	GTAC	2 cut(s)	74, 761
CviAII	CATG	6 cut(s)	282, 494, 548, 602, 935, 974
CviQI	GTAC	2 cut(s)	74, 761
DdeI	CTNAG	7 cut(s)	228, 258, 803, 1058, 1130, 1202, 1213
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraIII	CACNNNGTG	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	137, 339
Eco24I	GRGCYC	1 cut(s)	569
Eco47I	GGWCC	4 cut(s)	4, 847, 994, 1207
Eco57I	CTGAAG	1 cut(s)	1253
Eco91I	GGTNACC	1 cut(s)	590
EcoO109I	RGGNCCY	2 cut(s)	566, 1207
EcoO65I	GGTNACC	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	137, 339
EcoT22I	ATGCAT	1 cut(s)	1120
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	2 cut(s)	137, 339
FaeI	CATG	6 cut(s)	285, 497, 551, 605, 938, 977
FaqI	GGGAC	3 cut(s)	391, 860, 1220
FatI	CATG	6 cut(s)	281, 493, 547, 601, 934, 973
FauI	CCCGC	1 cut(s)	532
FblI	GTMKAC	2 cut(s)	504, 614
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	5 cut(s)	119, 245, 298, 565, 647
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	2 cut(s)	138, 698
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	657
GsaI	CCCAGC	1 cut(s)	841
GsuI	CTGGAG	2 cut(s)	157, 234
HaeIII	GGCC	1 cut(s)	567
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	6 cut(s)	285, 497, 551, 605, 938, 977
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	3 cut(s)	90, 238, 969
HindII	GTYRAC	3 cut(s)	90, 238, 969
HinfI	GANTC	5 cut(s)	245, 379, 805, 970, 1046
HpaI	GTTAAC	2 cut(s)	90, 238
HphI	GGTGA	3 cut(s)	602, 1231, 1255
Hpy166II	GTNNAC	7 cut(s)	90, 238, 505, 615, 763, 875, 969
Hpy188I	TCNGA	5 cut(s)	424, 998, 1131, 1216, 1233
Hpy188III	TCNNGA	5 cut(s)	63, 105, 158, 365, 935
Hpy8I	GTNNAC	7 cut(s)	90, 238, 505, 615, 763, 875, 969
HpyAV	CCTTC	6 cut(s)	429, 716, 778, 976, 1018, 1130
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	656, 923, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 920
HpyF3I	CTNAG	7 cut(s)	228, 258, 803, 1058, 1130, 1202, 1213
Hsp92II	CATG	6 cut(s)	285, 497, 551, 605, 938, 977
HspAI	GCGC	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	1207
KspAI	GTTAAC	2 cut(s)	90, 238
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	176, 725, 1083
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	3 cut(s)	178, 415, 1105
MaeI	CTAG	2 cut(s)	138, 698
MaeIII	GTNAC	3 cut(s)	590, 1030, 1236
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	157, 192, 459, 498, 1082, 1124
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	3 cut(s)	569, 1080, 1267
MluCI	AATT	5 cut(s)	331, 390, 477, 795, 1009
MlyI	GAGTC	4 cut(s)	239, 373, 814, 964
MmeI	TCCRAC	2 cut(s)	496, 1021
MnlI	CCTC	9 cut(s)	135, 219, 222, 676, 985, 1125, 1210, 1222, 1245
Mph1103I	ATGCAT	1 cut(s)	1120
MseI	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 945
MslI	CAYNNNNRTG	2 cut(s)	284, 600
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	1118
MwoI	GCNNNNNNNGC	2 cut(s)	119, 920
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	6 cut(s)	285, 497, 551, 605, 938, 977
NlaIV	GGNNCC	4 cut(s)	567, 848, 1208, 1209
NmuCI	GTSAC	3 cut(s)	590, 1030, 1236
NsiI	ATGCAT	1 cut(s)	1120
PagI	TCATGA	1 cut(s)	934
PctI	GAATGC	1 cut(s)	1118
PfeI	GAWTC	1 cut(s)	1046
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	4 cut(s)	239, 373, 813, 964
PpsI	GAGTC	4 cut(s)	239, 373, 813, 964
PpuMI	RGGWCCY	1 cut(s)	1207
Psp5II	RGGWCCY	1 cut(s)	1207
PspEI	GGTNACC	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	837
PspN4I	GGNNCC	4 cut(s)	567, 848, 1208, 1209
PspOMI	GGGCCC	1 cut(s)	565
PspPI	GGNCC	6 cut(s)	4, 565, 566, 847, 994, 1207
PspPPI	RGGWCCY	1 cut(s)	1207
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	75, 762
RsaNI	GTAC	2 cut(s)	74, 761
RseI	CAYNNNNRTG	2 cut(s)	284, 600
SaqAI	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 945
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	6 cut(s)	4, 565, 566, 847, 994, 1207
SchI	GAGTC	4 cut(s)	239, 373, 814, 964
SduI	GDGCHC	3 cut(s)	569, 1080, 1267
SfaNI	GCATC	3 cut(s)	178, 415, 1105
SfcI	CTRYAG	2 cut(s)	654, 915
SinI	GGWCC	4 cut(s)	4, 847, 994, 1207
SmiMI	CAYNNNNRTG	2 cut(s)	284, 600
Sse9I	AATT	5 cut(s)	331, 390, 477, 795, 1009
SsiI	CCGC	4 cut(s)	539, 769, 964, 1102
SspMI	CTAG	2 cut(s)	138, 698
StyI	CCWWGG	2 cut(s)	137, 339
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	5 cut(s)	331, 390, 477, 795, 1009
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	1 cut(s)	1046
Tru1I	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 945
Tru9I	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 945
TscAI	CASTG	5 cut(s)	43, 815, 848, 1008, 1245
TseFI	GTSAC	3 cut(s)	590, 1030, 1236
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	3 cut(s)	590, 1030, 1236
TspDTI	ATGAA	5 cut(s)	192, 209, 540, 923, 1125
TspGWI	ACGGA	1 cut(s)	994
TspRI	CASTG	5 cut(s)	43, 815, 848, 1008, 1245
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	4 cut(s)	4, 847, 994, 1207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1008
XmaJI	CCTAGG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	504, 614
XspI	CTAG	2 cut(s)	138, 698
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.