Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Reverse (-)

62136842 .. 62141733

Gene Structure 4892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGACCTGAAATCAAACCATACTTCTCCTGTTCTCACTGATCCTGCGCCTTTAGGCAAGTCGAGACTTGGTGTACATTCCAGTCTGTTAACATATTCAGGGTCAGGAACAGCTTTTCCAGCACTCTTAACCATCCCTAGGAGGAAGAATGGATTTCTTGATGATGTTCGCTCCAGCTCTTGGCTTGATGCTATGAAATCTTCATCGCCTCCTCACAGAAAGATAACTAAGGATGTTAACAATGACTCTCCAGCAACTGAGTATGATATTGCCTATCGCACATGGATGGTTAAGTATCCATCAGCTCTTACATCTTTTGAGCAAATCACTAATTATGCCAAGGGCAAAAGAATAGCATTGTTTCTCGATTATGATGGGACTCTTTCGCCAATTGTAGATAACCCTGACTGTGCCTTTATGTCTGATGCTATGCGAAGGGCTGTAAGAAGAGTGGCAAAACATTTCCCAACAGCAATAATTAGTGGAAGAAGCCATGACAAGGTATACGAGTTTGTTGGACTAAATGAACTATATTATGCGGGTAGTCATGGGATGGACATAATGGGCCCTGTTAGACAATCAGTAGTTGGTGACCATAGACATGGCTTTCGGTCTACTGACAGACAGGGCAAGGATGTTAATCTGTTCCAGCCTGCAGCAGAGTTTTTACCTATGATTGGCGAGGTTCTTAAATCCCTAGTAGAAACTACCAAAGACATTGAAGGAGCTAAAGTTGAAAACAAGTTCTGTGTCTCTGTACACTACCGCAATGTAGATGAGAAGTATTGGGCTGTAGTTGCACAGCGTGTTCATGACATTCTTAAAAACTACCCACGCCTGCGGTTGACTCATGGACGGAAGGTTTTAGAGGTCCGACCAGTGATAAATTGGGATAAAGGGAAGGCAGTCACATTTTTACTTGAATCTCTTGGGCTAAGTGATTGTGAAGATGTGCTCCCAATATATATTGGAGATGACCGCACAGATGAAGATGCATTCAAGGTTCTGAGGGAAGGAAACAGGGGTTATGGCATTTTAGTCTCTGCTGTGCCAAAGGAAAGCAATGCATTTTACTCACTAAGGGACCCCTCAGAGGTGATGGAGTTTCTGAAGTCACTGGTGATATGGAGGAAGTCAAGTGCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

382

Amino Acids

42.95

Weight (kDa)

8.87

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	121 - 364	2e-68	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	504, 614
AciI	CCGC	4 cut(s)	539, 766, 841, 979
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	1130
AdeI	CACNNNGTG	1 cut(s)	806
AfaI	GTAC	2 cut(s)	75, 759
AfiI	CCNNNNNNNGG	5 cut(s)	138, 180, 499, 677, 1093
AgsI	TTSAA	4 cut(s)	722, 737, 923, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	113, 177, 305, 728
AluI	AGCT	4 cut(s)	113, 177, 305, 728
Alw21I	GWGCWC	2 cut(s)	957, 1144
Alw26I	GTCTC	3 cut(s)	58, 757, 1045
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	565
ApaI	GGGCCC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	656
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	5 cut(s)	4, 565, 566, 871, 1084
AsuHPI	GGTGA	3 cut(s)	602, 1108, 1132
AvaII	GGWCC	3 cut(s)	4, 871, 1084
AvrII	CCTAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	569
Bbv12I	GWGCWC	2 cut(s)	957, 1144
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	6 cut(s)	140, 280, 307, 368, 547, 1093
BciVI	GTATCC	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	58, 757, 1045
BfaI	CTAG	2 cut(s)	138, 698
BfmI	CTRYAG	2 cut(s)	654, 792
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	657
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	658
Bme18I	GGWCC	3 cut(s)	4, 871, 1084
BmgT120I	GGNCC	5 cut(s)	4, 565, 566, 871, 1084
BmiI	GGNNCC	3 cut(s)	567, 1085, 1086
BmsI	GCATC	3 cut(s)	178, 415, 982
BpmI	CTGGAG	2 cut(s)	157, 234
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	137, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 180, 499, 677, 1093
Bse1I	ACTGG	3 cut(s)	81, 878, 1122
Bse3DI	GCAATG	2 cut(s)	775, 1069
Bse8I	GATNNNNATC	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	137, 339
BseGI	GGATG	5 cut(s)	132, 238, 291, 558, 640
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	5 cut(s)	138, 180, 499, 677, 1093
BseMI	GCAATG	2 cut(s)	775, 1069
BseMII	CTCAG	3 cut(s)	249, 998, 1104
BseNI	ACTGG	3 cut(s)	81, 878, 1122
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	668
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	957, 1144
BslFI	GGGAC	2 cut(s)	391, 1097
BslI	CCNNNNNNNGG	5 cut(s)	138, 180, 499, 677, 1093
BsmAI	GTCTC	3 cut(s)	58, 757, 1045
BsmFI	GGGAC	2 cut(s)	391, 1097
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	1 cut(s)	567
Bsp120I	GGGCCC	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	569, 957, 1144
Bsp1407I	TGTACA	2 cut(s)	73, 757
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	4 cut(s)	539, 766, 841, 979
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	250, 999, 1103
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	3 cut(s)	567, 1085, 1086
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	35
BsrDI	GCAATG	2 cut(s)	775, 1069
BsrGI	TGTACA	2 cut(s)	73, 757
BsrI	ACTGG	3 cut(s)	81, 878, 1122
BssECI	CCNNGG	2 cut(s)	137, 339
BssMI	GATC	1 cut(s)	40
BssNAI	GTATAC	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	137, 339
Bst1107I	GTATAC	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	442
BstAUI	TGTACA	2 cut(s)	73, 757
BstC8I	GCNNGC	2 cut(s)	654, 839
BstDEI	CTNAG	6 cut(s)	228, 258, 935, 1007, 1079, 1090
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	5 cut(s)	132, 238, 291, 558, 640
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	3 cut(s)	58, 757, 1045
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 797
BstPI	GGTNACC	1 cut(s)	590
BstSFI	CTRYAG	2 cut(s)	654, 792
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstZ17I	GTATAC	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	5 cut(s)	132, 238, 291, 558, 640
BtsIMutI	CAGTG	3 cut(s)	36, 885, 1115
Cac8I	GCNNGC	2 cut(s)	654, 839
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	5 cut(s)	4, 565, 566, 871, 1084
Csp6I	GTAC	2 cut(s)	74, 758
CviAII	CATG	6 cut(s)	282, 494, 548, 602, 812, 851
CviQI	GTAC	2 cut(s)	74, 758
DdeI	CTNAG	6 cut(s)	228, 258, 935, 1007, 1079, 1090
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraIII	CACNNNGTG	1 cut(s)	806
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	137, 339
Eco24I	GRGCYC	1 cut(s)	569
Eco47I	GGWCC	3 cut(s)	4, 871, 1084
Eco57I	CTGAAG	1 cut(s)	1130
Eco91I	GGTNACC	1 cut(s)	590
EcoO109I	RGGNCCY	2 cut(s)	566, 1084
EcoO65I	GGTNACC	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	137, 339
EcoT22I	ATGCAT	2 cut(s)	997, 1069
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	2 cut(s)	137, 339
FaeI	CATG	6 cut(s)	285, 497, 551, 605, 815, 854
FaqI	GGGAC	2 cut(s)	391, 1097
FatI	CATG	6 cut(s)	281, 493, 547, 601, 811, 850
FauI	CCCGC	1 cut(s)	532
FblI	GTMKAC	2 cut(s)	504, 614
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	5 cut(s)	119, 245, 298, 565, 647
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	2 cut(s)	138, 698
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	657
GsuI	CTGGAG	2 cut(s)	157, 234
HaeIII	GGCC	1 cut(s)	567
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	6 cut(s)	285, 497, 551, 605, 815, 854
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	3 cut(s)	90, 238, 846
HindII	GTYRAC	3 cut(s)	90, 238, 846
HinfI	GANTC	4 cut(s)	245, 379, 847, 923
HpaI	GTTAAC	2 cut(s)	90, 238
HphI	GGTGA	3 cut(s)	602, 1108, 1132
Hpy166II	GTNNAC	7 cut(s)	74, 90, 238, 505, 615, 760, 846
Hpy188I	TCNGA	5 cut(s)	424, 875, 1008, 1093, 1110
Hpy188III	TCNNGA	5 cut(s)	63, 105, 158, 365, 812
Hpy8I	GTNNAC	7 cut(s)	74, 90, 238, 505, 615, 760, 846
HpyAV	CCTTC	5 cut(s)	429, 716, 853, 895, 1007
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	656, 800, 995, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 797
HpyF3I	CTNAG	6 cut(s)	228, 258, 935, 1007, 1079, 1090
Hsp92II	CATG	6 cut(s)	285, 497, 551, 605, 815, 854
HspAI	GCGC	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	1084
KspAI	GTTAAC	2 cut(s)	90, 238
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	176, 725, 960
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	3 cut(s)	178, 415, 982
MaeI	CTAG	2 cut(s)	138, 698
MaeIII	GTNAC	3 cut(s)	590, 907, 1113
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	157, 192, 459, 498, 959, 1001
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	3 cut(s)	569, 957, 1144
MluCI	AATT	4 cut(s)	331, 390, 477, 886
MlyI	GAGTC	3 cut(s)	239, 373, 841
MmeI	TCCRAC	2 cut(s)	496, 898
MnlI	CCTC	9 cut(s)	135, 219, 222, 676, 862, 1002, 1087, 1099, 1122
Mph1103I	ATGCAT	2 cut(s)	997, 1069
MseI	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 822
MslI	CAYNNNNRTG	2 cut(s)	284, 600
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	995
MwoI	GCNNNNNNNGC	2 cut(s)	119, 797
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	6 cut(s)	285, 497, 551, 605, 815, 854
NlaIV	GGNNCC	3 cut(s)	567, 1085, 1086
NmuCI	GTSAC	3 cut(s)	590, 907, 1113
NsiI	ATGCAT	2 cut(s)	997, 1069
PagI	TCATGA	1 cut(s)	811
PctI	GAATGC	1 cut(s)	995
PfeI	GAWTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	3 cut(s)	239, 373, 841
PpsI	GAGTC	3 cut(s)	239, 373, 841
PpuMI	RGGWCCY	1 cut(s)	1084
Psp5II	RGGWCCY	1 cut(s)	1084
PspEI	GGTNACC	1 cut(s)	590
PspN4I	GGNNCC	3 cut(s)	567, 1085, 1086
PspOMI	GGGCCC	1 cut(s)	565
PspPI	GGNCC	5 cut(s)	4, 565, 566, 871, 1084
PspPPI	RGGWCCY	1 cut(s)	1084
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	75, 759
RsaNI	GTAC	2 cut(s)	74, 758
RseI	CAYNNNNRTG	2 cut(s)	284, 600
SaqAI	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 822
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	5 cut(s)	4, 565, 566, 871, 1084
SchI	GAGTC	3 cut(s)	239, 373, 841
SduI	GDGCHC	3 cut(s)	569, 957, 1144
SfaNI	GCATC	3 cut(s)	178, 415, 982
SfcI	CTRYAG	2 cut(s)	654, 792
SinI	GGWCC	3 cut(s)	4, 871, 1084
SmiMI	CAYNNNNRTG	2 cut(s)	284, 600
Sse9I	AATT	4 cut(s)	331, 390, 477, 886
SsiI	CCGC	4 cut(s)	539, 766, 841, 979
SspMI	CTAG	2 cut(s)	138, 698
StyI	CCWWGG	2 cut(s)	137, 339
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	62, 366
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	4 cut(s)	331, 390, 477, 886
TatI	WGTACW	2 cut(s)	73, 757
TfiI	GAWTC	1 cut(s)	923
Tru1I	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 822
Tru9I	TTAA	7 cut(s)	89, 128, 237, 291, 639, 690, 822
TscAI	CASTG	3 cut(s)	43, 885, 1122
TseFI	GTSAC	3 cut(s)	590, 907, 1113
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	3 cut(s)	590, 907, 1113
TspDTI	ATGAA	5 cut(s)	192, 209, 540, 800, 1002
TspGWI	ACGGA	1 cut(s)	871
TspRI	CASTG	3 cut(s)	43, 885, 1122
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	3 cut(s)	4, 871, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	885
XmaJI	CCTAGG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	504, 614
XspI	CTAG	2 cut(s)	138, 698
Zsp2I	ATGCAT	2 cut(s)	997, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.