Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8404293.1

Orthogroup ID

OG0007067

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1105

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8404293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggacctgaaatcaaaccatacttctcctgttctcactgatcctgcgcctttaggcaagtcaagacttggcgtacattccagtctgttaacatattcagggtcaggaacagcttttccagcactcttaaccatccctaggaggaagaatggatttcttgatgatgttcgctccagctcttggcttgatgctatgaaatcttcatcgcctcctcacagaaagataactaaggatgttaacaatgactctccagcaactgagtatgatattgcctatcgcacatggatggttaagtatccatcagctcttacatcttttgagcaaatcactaattatgccaagggcaaaagaatagcattgtttctcgattatgatgggactctttcgccaattgtagataaccctgactgtgcctttatgtctgatgctatgcgaagggctgtaagaagagtggcaaaacatttcccaacagcaataattagtggaagaagccatgacaaggtatacgagtttgttggactaaatgaactatattatgctggtagtcatgggatggacataatgggccctgttagacaatcagtagttggtgaccatagacatggctttcagtctactgacagacagggcaaggatgttaatctgttccagcctgcagcagagtttttacctatgattggcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

228

Amino Acids

25.31

Weight (kDa)

8.91

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51460 AT5G51460 AT5G51460 AT5G51460 AT5G51460
fragaria_vesca	FvH4_7g27620
malus_domestica	MD11G1196000.v1.1
prunus_persica	Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1 Prupe.2G277800_v2.0.a1
pyrus_communis	pycom01g19400 pycom07g22750
rosa_chinensis	RchiOBHm_Chr1g0374491
rosa_laevigata	RLG00000026734
rosa_multiflora	Rmu_co8404293.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283450
rosa_rugosa	Rorug01G0383400 Rorug01G0383500 Rorug01G0383600
rosa_samantha	Rh1AG394300 Rh1BG358900 Rh1CG372000 Rh1DG389500
rosa_wichuraiana	Rw1G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	504, 614
AclWI	GGATC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	4 cut(s)	138, 180, 499, 677
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
AluBI	AGCT	3 cut(s)	113, 177, 305
AluI	AGCT	3 cut(s)	113, 177, 305
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	565
ApaI	GGGCCC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	656
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	4, 565, 566
AsuHPI	GGTGA	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	5 cut(s)	140, 280, 307, 368, 547
BciVI	GTATCC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	657
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	658
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 565, 566
BmiI	GGNNCC	1 cut(s)	567
BmsI	GCATC	2 cut(s)	178, 415
BpmI	CTGGAG	2 cut(s)	157, 234
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	137, 339
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 180, 499, 677
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	137, 339
BseGI	GGATG	5 cut(s)	132, 238, 291, 558, 640
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	4 cut(s)	138, 180, 499, 677
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	668
BshFI	GGCC	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	4 cut(s)	138, 180, 499, 677
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	567
Bsp120I	GGGCCC	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	137, 339
BssMI	GATC	1 cut(s)	40
BssNAI	GTATAC	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	137, 339
Bst1107I	GTATAC	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	2 cut(s)	228, 258
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	5 cut(s)	132, 238, 291, 558, 640
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstZ17I	GTATAC	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	5 cut(s)	132, 238, 291, 558, 640
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	654
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	4, 565, 566
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	4 cut(s)	282, 494, 548, 602
CviJI	RGCY	9 cut(s)	113, 177, 184, 305, 440, 492, 567, 606, 652
CviKI_1	RGCY	9 cut(s)	113, 177, 184, 305, 440, 492, 567, 606, 652
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	228, 258
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	137, 339
Eco24I	GRGCYC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	4
Eco91I	GGTNACC	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	137, 339
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	2 cut(s)	137, 339
FaeI	CATG	4 cut(s)	285, 497, 551, 605
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	281, 493, 547, 601
FblI	GTMKAC	2 cut(s)	504, 614
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	5 cut(s)	119, 245, 298, 565, 647
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	657
GsuI	CTGGAG	2 cut(s)	157, 234
HaeIII	GGCC	1 cut(s)	567
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	285, 497, 551, 605
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	90, 238
HindII	GTYRAC	2 cut(s)	90, 238
HinfI	GANTC	2 cut(s)	245, 379
HpaI	GTTAAC	2 cut(s)	90, 238
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	4 cut(s)	90, 238, 505, 615
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	63, 105, 158, 365
Hpy8I	GTNNAC	4 cut(s)	90, 238, 505, 615
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	228, 258
Hsp92II	CATG	4 cut(s)	285, 497, 551, 605
HspAI	GCGC	1 cut(s)	47
KspAI	GTTAAC	2 cut(s)	90, 238
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	2 cut(s)	178, 415
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	157, 192, 459, 498
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	3 cut(s)	331, 390, 477
MlyI	GAGTC	2 cut(s)	239, 373
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	3 cut(s)	135, 219, 222
MseI	TTAA	5 cut(s)	89, 128, 237, 291, 639
MslI	CAYNNNNRTG	2 cut(s)	284, 600
MunI	CAATTG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	285, 497, 551, 605
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	590
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	2 cut(s)	239, 373
PpsI	GAGTC	2 cut(s)	239, 373
PspEI	GGTNACC	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	567
PspOMI	GGGCCC	1 cut(s)	565
PspPI	GGNCC	3 cut(s)	4, 565, 566
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	2 cut(s)	284, 600
SaqAI	TTAA	5 cut(s)	89, 128, 237, 291, 639
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	3 cut(s)	4, 565, 566
SchI	GAGTC	2 cut(s)	239, 373
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	6 cut(s)	9, 115, 179, 307, 504, 673
SfaNI	GCATC	2 cut(s)	178, 415
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	284, 600
Sse9I	AATT	3 cut(s)	331, 390, 477
SspMI	CTAG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	137, 339
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	331, 390, 477
Tru1I	TTAA	5 cut(s)	89, 128, 237, 291, 639
Tru9I	TTAA	5 cut(s)	89, 128, 237, 291, 639
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	3 cut(s)	192, 209, 540
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	4
XmaJI	CCTAGG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	504, 614
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.